View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10395_low_15 (Length: 225)
Name: NF10395_low_15
Description: NF10395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10395_low_15 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 80 - 225
Target Start/End: Original strand, 14965410 - 14965546
Alignment:
| Q |
80 |
attagctcgtgtttaggccaacacacttctttatttgttacaaatgcttattatagcatgctttgcatgcttttaacatttcttttgnnnnnnnatattg |
179 |
Q |
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| T |
14965410 |
attagctcgtgtttaggccaacacacttctttatttgttacaaatgcttattata---------gcatgcttttaacatttcttttgtttttttatattg |
14965500 |
T |
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| Q |
180 |
cgtacttgtatagataaattatatccatgtgtttttagggtaattt |
225 |
Q |
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| T |
14965501 |
cgtacttgtatagataaattatatccatgtgtttttagggtaattt |
14965546 |
T |
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Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 14965359 - 14965420
Alignment:
| Q |
1 |
gattgtgtaattctgagattagctagccatttgaatcaaatttcttcattaattagctcgtg |
62 |
Q |
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| T |
14965359 |
gattgtgtaattctgagattagctagtcatttgaatcaaatttcttcattaattagctcgtg |
14965420 |
T |
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