View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10395_low_3 (Length: 475)
Name: NF10395_low_3
Description: NF10395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10395_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Original strand, 24692075 - 24692543
Alignment:
| Q |
1 |
taactttctcttataaataagatcgaagggagtatttgacatcaaaattttagaaa-ttttacataattaacnnnnnnngaaatcttttagaacagcatt |
99 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||| |
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|
| T |
24692075 |
taactttttcttataaataggatcgaagggagtatttgacatcaaaattttagaaaattttacataacaaa----aaaagaaatcttttagaacagcatt |
24692170 |
T |
|
| Q |
100 |
agattggatcattagtatacactgaaattcagctcttatcgcttagattcgttnnnnnnnntaaatagatcaggagtaagaattaaaagttacaatacaa |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||| |||||||||||||||| |||||||||| |
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|
| T |
24692171 |
agattggatcattagtatacactgaaattcagctcttatcgcttagattcgttaaaaaaaaaaaaaaaatcatgagtaagaattaaaagctacaatacaa |
24692270 |
T |
|
| Q |
200 |
acctcagtctgaagtttttgattctgagcttgaagtgcatcattatcagccttaatagtatcatattgtcttttaagaacatcatagtctttctctaact |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
24692271 |
acctcagtctgaagtttttgattctgagcttgaagtgcatcattatcagccttaatagtatcatattgtcttttgagaacatcatagtctttctctaact |
24692370 |
T |
|
| Q |
300 |
gttttgtcttccacctagcccttctgttttgaaaccatatagcaatctgtcttggctgcaatccaagagctcttgctagctgcattttcctctcaggttc |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24692371 |
gttttgtcttccacctagcccttctgttttgaaaccatatagcaatttgtcttggctgcaatccaagagctcttgctagctgcattttcctctcaggttc |
24692470 |
T |
|
| Q |
400 |
aagcttgtttcctaactcaaaactcttctcaagtgtcttcacttgttccatgttaagccttctctgcttctcc |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
24692471 |
aagcttgtttcctaactcaaaactcttctcaagtgtcttcacttgttccatgttaagccttctcttcttctcc |
24692543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 308 - 383
Target Start/End: Complemental strand, 9379112 - 9379037
Alignment:
| Q |
308 |
ttccacctagcccttctgttttgaaaccatatagcaatctgtcttggctgcaatccaagagctcttgctagctgca |
383 |
Q |
| |
|
||||| ||||| ||| ||||||||||||||||||||| |||||||||||||||||||| |||| |||| ||||| |
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|
| T |
9379112 |
ttccatctagctcttttgttttgaaaccatatagcaacttgtcttggctgcaatccaagctctctagctaactgca |
9379037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 195 - 471
Target Start/End: Original strand, 17181794 - 17182070
Alignment:
| Q |
195 |
tacaaacctcagtctgaagtttttgattctgagcttgaagtgcatcattatcagccttaatagtatcatattgtcttttaagaacatcatagtctttctc |
294 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| || |
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|
| T |
17181794 |
tacaaacctcagcttgaagtttttggttctgagcttgaagtgcatcattatctaacttaatagcatcatattgtcttttaagaacatcatagtctttttc |
17181893 |
T |
|
| Q |
295 |
taactgttttgtcttccacctagcccttctgttttgaaaccatatagcaatctgtcttggctgcaatccaagagctcttgctagctgcattttcctctca |
394 |
Q |
| |
|
||||| ||||||||||| || |||||||| ||||||||||||||||||| ||||| || ||||| |||||||||||| |||||||||||||||||| |
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|
| T |
17181894 |
caactgctttgtcttccatcttgcccttctattttgaaaccatatagcaacttgtctaggttgcaagttaagagctcttgcaagctgcattttcctctca |
17181993 |
T |
|
| Q |
395 |
ggttcaagcttgtttcctaactcaaaactcttctcaagtgtcttcacttgttccatgttaagccttctctgcttctc |
471 |
Q |
| |
|
|| |||||||| || || | ||||||||||||||||||||||||||||||||||| |||||||| |||| |||||| |
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|
| T |
17181994 |
ggctcaagcttattaccaagttcaaaactcttctcaagtgtcttcacttgttccatattaagcctcctcttcttctc |
17182070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 312 - 432
Target Start/End: Original strand, 16762997 - 16763117
Alignment:
| Q |
312 |
acctagcccttctgttttgaaaccatatagcaatctgtcttggctgcaatccaagagctcttgctagctgcattttcctctcaggttcaagcttgtttcc |
411 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||| ||||| ||||| || |||| || || | |||||| |||||||||||||||||| | |
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|
| T |
16762997 |
accttgcccttctgttttgaaaccatatagcaacttgtcttggttgcaaaccaagctcttttgcaagttgaactttcctatcaggttcaagcttgttttc |
16763096 |
T |
|
| Q |
412 |
taactcaaaactcttctcaag |
432 |
Q |
| |
|
|| |||||||||||| ||||| |
|
|
| T |
16763097 |
tacctcaaaactcttttcaag |
16763117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 221 - 447
Target Start/End: Original strand, 3353607 - 3353833
Alignment:
| Q |
221 |
ttctgagcttgaagtgcatcattatcagccttaatagtatcatattgtcttttaagaacatcatagtctttctctaactgttttgtcttccacctagccc |
320 |
Q |
| |
|
|||||||| | ||||| || |||||||||||||| || |||| ||||| | |||||||| ||||| |||||||| | || || || |||||||| || | |
|
|
| T |
3353607 |
ttctgagccttaagtgtattattatcagccttaagagaatcaaattgtttcttaagaacttcatattctttctcaagttgcttagttttccaccttgctc |
3353706 |
T |
|
| Q |
321 |
ttctgttttgaaaccatatagcaatctgtcttggctgcaatccaagagctcttgctagctgcattttcctctcaggttcaagcttgtttcctaactcaaa |
420 |
Q |
| |
|
|||| ||||| ||||||||||| | ||||| || || || || | |||| | || | |||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
3353707 |
ttctattttggaaccatatagctacttgtctaggttgtaaccccaaagctttagccaattgcattttcctctcaggttcaagcttgtttccaatctcaaa |
3353806 |
T |
|
| Q |
421 |
actcttctcaagtgtcttcacttgttc |
447 |
Q |
| |
|
|||||||||||||| ||||||||||| |
|
|
| T |
3353807 |
actcttctcaagtgctttcacttgttc |
3353833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 24735609 - 24735560
Alignment:
| Q |
189 |
ttacaatacaaacctcagtctgaagtttttgattctgagcttgaagtgca |
238 |
Q |
| |
|
||||||||||||| ||||||||||||||||| || ||||||||| ||||| |
|
|
| T |
24735609 |
ttacaatacaaacttcagtctgaagtttttggttatgagcttgatgtgca |
24735560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 384
Target Start/End: Original strand, 42087505 - 42087569
Alignment:
| Q |
320 |
cttctgttttgaaaccatatagcaatctgtcttggctgcaatccaagagctcttgctagctgcat |
384 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| |||||||| |||||| ||||||| || ||||| |
|
|
| T |
42087505 |
cttctgttctgaaaccatatagcaacttgtctaggctgcaaaccaagatctcttgcaagttgcat |
42087569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 9190145 - 9190178
Alignment:
| Q |
2 |
aactttctcttataaataagatcgaagggagtat |
35 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
|
|
| T |
9190145 |
aactttctcttataaataggatcgaagggagtat |
9190178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 449
Target Start/End: Original strand, 2342796 - 2342925
Alignment:
| Q |
320 |
cttctgttttgaaaccatatagcaatctgtcttggctgcaatccaagagctcttgctagctgcattttcctctcaggttcaagcttgtttcctaactcaa |
419 |
Q |
| |
|
||||| || ||||||||||||||||| ||||| |||||||| || | ||| | || || |||| ||| || || || ||||||||||| || || |||| |
|
|
| T |
2342796 |
cttctattctgaaaccatatagcaatttgtctaggctgcaaccctaaagccttagcaagttgcacttttctttctggatcaagcttgttcccaaattcaa |
2342895 |
T |
|
| Q |
420 |
aactcttctcaagtgtcttcacttgttcca |
449 |
Q |
| |
|
| ||||||||||| | || |||||| |||| |
|
|
| T |
2342896 |
agctcttctcaagggcctgcacttgatcca |
2342925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 408
Target Start/End: Original strand, 44593559 - 44593687
Alignment:
| Q |
280 |
atcatagtctttctctaactgttttgtcttccacctagcccttctgttttgaaaccatatagcaatctgtcttggctgcaatccaagagctcttgctagc |
379 |
Q |
| |
|
|||||| || ||||| | |||||| ||||||||||| || | | |||||||||||| ||||||| || | ||||||||| ||||| || | |||||| |
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|
| T |
44593559 |
atcataatccttctcaagctgtttagtcttccaccttgcacgacggttttgaaaccaaatagcaacttgccgtggctgcaaaccaaggtctttagctagc |
44593658 |
T |
|
| Q |
380 |
tgcattttcctctcaggttcaagcttgtt |
408 |
Q |
| |
|
| |||||||||| |||||||| ||||| |
|
|
| T |
44593659 |
ttggttttcctctctggttcaagtttgtt |
44593687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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