View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10395_low_6 (Length: 336)
Name: NF10395_low_6
Description: NF10395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10395_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 23407557 - 23407880
Alignment:
| Q |
1 |
gtggtgaacaaactggttcacctatgtacgattgaagaaagactagggagcatgtggcaatcttggagaaaaattactttaatgtctatggaggataata |
100 |
Q |
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| T |
23407557 |
gtggtgaacaaactggttcacctatgtacgattgaagaaagactagggagcatgtggcaatcttggagaaaaattactttaatgtctatggaggataata |
23407656 |
T |
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| Q |
101 |
agtatatggttcaatttttataag-tgatcgggagagaatttttcaaggaagtccttgactaattgataaaa-taagattatcttgcagaacgttgctat |
198 |
Q |
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| T |
23407657 |
agtatatggttcaattgttataaggtgatctggagagaatttttcatggaagtacttgactaattgataaaaatatgatcatcttgcagaaggttgctat |
23407756 |
T |
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| Q |
199 |
aggtgaagatcctatggttatccaaatgaacacagcggagatttgggttcaagttcatcaacttcccttcggcatcatcgatacaactatgggagcgtta |
298 |
Q |
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| T |
23407757 |
aggtgaagatcctatggctatccaaatgaacacaacggagatttgggttcaagttcatcaatttcccttcggcatcatcgatacaactataggagcgtta |
23407856 |
T |
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| Q |
299 |
gttggaagtcatattggtggaatg |
322 |
Q |
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| T |
23407857 |
gttggaagtcatattggtggaatg |
23407880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 200 - 322
Target Start/End: Complemental strand, 23408854 - 23408732
Alignment:
| Q |
200 |
ggtgaagatcctatggttatccaaatgaacacagcggagatttgggttcaagttcatcaacttcccttcggcatcatcgatacaactatgggagcgttag |
299 |
Q |
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|||||||| | ||||| ||||| |||||||||| || ||||||||||||| ||| |||||||| ||||| |||| ||||||||||| ||||| |||| |
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| T |
23408854 |
ggtgaagaccatatggctatcccaatgaacacaatagatatttgggttcaagatcaccaacttccattcggtttcatggatacaactataggagctttag |
23408755 |
T |
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| Q |
300 |
ttggaagtcatattggtggaatg |
322 |
Q |
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| T |
23408754 |
ttggaagtcatatttgttgaatg |
23408732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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