View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10396_high_1 (Length: 750)

Name: NF10396_high_1
Description: NF10396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10396_high_1
NF10396_high_1
[»] chr8 (7 HSPs)
chr8 (162-733)||(27230280-27230845)
chr8 (162-416)||(27183431-27183685)
chr8 (455-733)||(27183687-27183971)
chr8 (252-302)||(3368282-3368332)
chr8 (463-719)||(13472928-13473181)
chr8 (254-300)||(4027476-4027522)
chr8 (373-414)||(13473224-13473265)
[»] chr2 (3 HSPs)
chr2 (663-727)||(13281089-13281153)
chr2 (254-301)||(27724744-27724791)
chr2 (254-300)||(34324900-34324946)
[»] scaffold0129 (2 HSPs)
scaffold0129 (254-302)||(17602-17650)
scaffold0129 (254-302)||(33998-34046)
[»] chr5 (11 HSPs)
chr5 (663-727)||(28994983-28995047)
chr5 (252-300)||(30651129-30651177)
chr5 (252-300)||(31777475-31777523)
chr5 (373-414)||(32642640-32642681)
chr5 (370-414)||(37512595-37512639)
chr5 (250-302)||(42630062-42630114)
chr5 (664-714)||(9764510-9764560)
chr5 (370-428)||(42406384-42406442)
chr5 (372-406)||(42414484-42414518)
chr5 (371-409)||(42565299-42565337)
chr5 (663-724)||(28867117-28867178)
[»] chr6 (7 HSPs)
chr6 (375-414)||(25319628-25319667)
chr6 (375-414)||(26149321-26149360)
chr6 (251-302)||(29299624-29299675)
chr6 (376-410)||(32745216-32745250)
chr6 (373-414)||(21378784-21378825)
chr6 (251-308)||(29149185-29149242)
chr6 (251-308)||(34278935-34278992)
[»] scaffold0054 (2 HSPs)
scaffold0054 (376-414)||(40146-40184)
scaffold0054 (376-410)||(33799-33833)
[»] chr1 (3 HSPs)
chr1 (256-290)||(344684-344718)
chr1 (373-414)||(51875037-51875078)
chr1 (373-410)||(22535517-22535554)
[»] chr7 (4 HSPs)
chr7 (253-299)||(25627761-25627807)
chr7 (373-414)||(5393750-5393791)
chr7 (373-410)||(5442080-5442117)
chr7 (373-410)||(5451090-5451127)
[»] chr3 (1 HSPs)
chr3 (253-290)||(2703335-2703372)


Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-166; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 162 - 733
Target Start/End: Complemental strand, 27230845 - 27230280
Alignment:
Q  162 actttggaacccagttactggggaagttaaggtcatccctcctggtcttgtagagcatctacctaatatccatgtttatggtaccttgtgtcttcatgga 261  Q
    |||||||||||| ||||||  |||||||||||| |||||||||||||||||||||  |||| ||||||| ||||||||||||||| | ||||||||||||    
T  27230845 actttggaaccctgttactcaggaagttaaggtaatccctcctggtcttgtagagtgtctatctaatattcatgtttatggtaccctttgtcttcatgga 27230746  T
Q  262 tttggttatgaccatgtcagagatgactacaaggttattcggcatgttcgttatcgttatttatcaactcattattctcaaaaagaagatttacgtatgt 361  Q
    ||||| ||||||||||||| ||||||||||||| ||||||| |||||| ||||||| ||| || |   |  |||| |||  ||||||||||| | ||||     
T  27230745 tttggatatgaccatgtcaaagatgactacaagcttattcgtcatgttggttatcggtatatacctgatatttatcctcggaaagaagattttcctatgc 27230646  T
Q  362 tacctgactcattttgggagatatatagcctaagaagtaactcttggagaaaagttatttttgatatactaattcctcactttcgttgtttagactctgt 461  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||| ||||      
T  27230645 tacctaactcattctgggagatatatagcctaagaagtaactcttggagaaaaattattgttgatataccaattcctcactttcgttgtttaggctctaa 27230546  T
Q  462 gtctggagtgtacttgaatggggtgtgccattggttgggggttttagatgatgaaacaatttgtgttgtgtcatttaacttggccaatgatgtgtttttc 561  Q
          |||||||||||||||||||||||||||||||| ||||| |||| ||| ||||| || ||||||||||||||||||| |||||||||||||||||    
T  27230545 ------agtgtacttgaatggggtgtgccattggttggcggtttcagataatggaacaacttttgttgtgtcatttaacttgaccaatgatgtgtttttc 27230452  T
Q  562 actacaccaatagattggcatcatccttctttttctagattggtggtgttaaatgggtccatagcgatgatcacagattattctacaaccaagtcttaca 661  Q
    ||||||||||||||||||||||||| ||||| || |||||||| |||||||||||||| ||||||||||||||||  ||||  | | ||| |||||||||    
T  27230451 actacaccaatagattggcatcatcgttcttcttttagattggcggtgttaaatgggttcatagcgatgatcacacgttatcatgctaccgagtcttaca 27230352  T
Q  662 ccatatcgatattgggtgaaattggtgtcaaagaatcatggattacactcttcgatattggaccttcatctt 733  Q
    ||||||| || |||||||| ||||||||||| |||||||||| || |||||||||||||||||||| |||||    
T  27230351 ccatatcaattttgggtgagattggtgtcaaggaatcatggactagactcttcgatattggacctttatctt 27230280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 162 - 416
Target Start/End: Original strand, 27183431 - 27183685
Alignment:
Q  162 actttggaacccagttactggggaagttaaggtcatccctcctggtcttgtagagcatctacctaatatccatgtttatggtaccttgtgtcttcatgga 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27183431 actttggaacccagttactggggaagttaaggtcatccctcctggtcttgtagagcatctacctaatatccatgtttttggtaccttgtgtcttcatgga 27183530  T
Q  262 tttggttatgaccatgtcagagatgactacaaggttattcggcatgttcgttatcgttatttatcaactcattattctcaaaaagaagatttacgtatgt 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||  ||||||||||||||  ||||    
T  27183531 tttggttatgaccatgtcagagatgactacaaggttattcggcatgttcaatatcgttatatatcaactcattattcttgaaaagaagatttactcatgt 27183630  T
Q  362 tacctgactcattttgggagatatatagcctaagaagtaactcttggagaaaagt 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27183631 tacctgactcattttgggagatatatagcctaagaagtaactcttggagaaaagt 27183685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 455 - 733
Target Start/End: Original strand, 27183687 - 27183971
Alignment:
Q  455 actctgtgtctggagtgtacttgaatggggtgtgccattggttgggggttttagatgatgaaacaatttgtgttgtgtcatttaacttggccaatgatgt 554  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| || || || ||||||||||| ||| ||||||||||||||    
T  27183687 actctgtgtctggagtgtacttgaatggagtgtgccattggttgggggtttcagatgatggaaaaacttctgttgtgtcatataatttggccaatgatgt 27183786  T
Q  555 gtttttcactacaccaatagattggcatcatccttctt------tttctagattggtggtgttaaatgggtccatagcgatgatcacagattattctaca 648  Q
     ||||||||||||||||||| | ||||||||| |||||      ||||||||||||||||||||||||||| | || |||||||||||||||| | || |    
T  27183787 atttttcactacaccaatagttaggcatcatcgttcttattctatttctagattggtggtgttaaatgggttcttatcgatgatcacagattactatata 27183886  T
Q  649 accaagtcttacaccatatcgatattgggtgaaattggtgtcaaagaatcatggattacactcttcgatattggaccttcatctt 733  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27183887 accaagtcttacaccatatcgattttgggtgaaattggtgtcaaagaatcatggattaaactcttcgatattggaccttcatctt 27183971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 3368332 - 3368282
Alignment:
Q  252 tcttcatggatttggttatgaccatgtcagagatgactacaaggttattcg 302  Q
    |||||||||||||||||||||||| || ||||||||||| ||||| |||||    
T  3368332 tcttcatggatttggttatgaccaagttagagatgactataaggtaattcg 3368282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 463 - 719
Target Start/End: Complemental strand, 13473181 - 13472928
Alignment:
Q  463 tctggagtgtacttgaatggggtgtgccattggttgggggttttagatgatgaaacaatttgtgttgtgtcatttaacttggccaatgatgtgtttttca 562  Q
    |||| ||||||||||||||||||||||||||||||||    |  | | ||| |||   ||| |||||| |||||||||||   |||||| ||||||| ||    
T  13473181 tctgaagtgtacttgaatggggtgtgccattggttggcaaatacaaaggatcaaa---tttttgttgtatcatttaacttatgcaatgacgtgttttcca 13473085  T
Q  563 ctacaccaatagattggcatcatccttctttttctagattggtggtgttaaatgggtccatagcgatgatcacagattattctacaaccaagtcttacac 662  Q
    ||||||| ||||||  | || ||  || || |  ||||||| |||||||||||| |||  | || ||||||||| | |||   |   |||  |||| ||     
T  13473084 ctacacccatagatgagtatgatattttttctgttagattgatggtgttaaatgagtctcttgctatgatcacaaagtatgacaatgccacatctttcaa 13472985  T
Q  663 catatcgatattgggtgaaattggtgtcaaagaatcatggattacactcttcgatat 719  Q
    |||||| || ||||||||||| ||||||||||||||||||| || |||||| |||||    
T  13472984 catatcaattttgggtgaaatcggtgtcaaagaatcatggactagactctttgatat 13472928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 4027476 - 4027522
Alignment:
Q  254 ttcatggatttggttatgaccatgtcagagatgactacaaggttatt 300  Q
    ||||||||||||||||||||| ||| ||||||||||| ||| |||||    
T  4027476 ttcatggatttggttatgaccgtgttagagatgactataagattatt 4027522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 373 - 414
Target Start/End: Complemental strand, 13473265 - 13473224
Alignment:
Q  373 ttttgggagatatatagcctaagaagtaactcttggagaaaa 414  Q
    |||||||||||||||||  ||||||||||||| |||||||||    
T  13473265 ttttgggagatatatagtttaagaagtaactcgtggagaaaa 13473224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 663 - 727
Target Start/End: Original strand, 13281089 - 13281153
Alignment:
Q  663 catatcgatattgggtgaaattggtgtcaaagaatcatggattacactcttcgatattggacctt 727  Q
    |||||| || ||||||||||||||||| ||||||||||||| || |||||||||| |||||||||    
T  13281089 catatcaattttgggtgaaattggtgttaaagaatcatggactagactcttcgatgttggacctt 13281153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 254 - 301
Target Start/End: Complemental strand, 27724791 - 27724744
Alignment:
Q  254 ttcatggatttggttatgaccatgtcagagatgactacaaggttattc 301  Q
    |||||||||||||||||||||||||  |||||||||||||||| ||||    
T  27724791 ttcatggatttggttatgaccatgttcgagatgactacaaggtcattc 27724744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 34324900 - 34324946
Alignment:
Q  254 ttcatggatttggttatgaccatgtcagagatgactacaaggttatt 300  Q
    ||||||||||||||||||||||||| ||||||||||| ||| |||||    
T  34324900 ttcatggatttggttatgaccatgttagagatgactataagattatt 34324946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 17650 - 17602
Alignment:
Q  254 ttcatggatttggttatgaccatgtcagagatgactacaaggttattcg 302  Q
    ||||||||||||||||||||||||| |||||||||||||| || |||||    
T  17650 ttcatggatttggttatgaccatgttagagatgactacaaagtcattcg 17602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 34046 - 33998
Alignment:
Q  254 ttcatggatttggttatgaccatgtcagagatgactacaaggttattcg 302  Q
    ||||||||||||||||||| ||||| ||||||||||||||||| |||||    
T  34046 ttcatggatttggttatgagcatgttagagatgactacaaggtcattcg 33998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 663 - 727
Target Start/End: Original strand, 28994983 - 28995047
Alignment:
Q  663 catatcgatattgggtgaaattggtgtcaaagaatcatggattacactcttcgatattggacctt 727  Q
    |||||| || ||||||||||||||||||   ||||||||| ||| ||||||||||||||||||||    
T  28994983 catatcaatcttgggtgaaattggtgtcggtgaatcatggtttagactcttcgatattggacctt 28995047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 30651129 - 30651177
Alignment:
Q  252 tcttcatggatttggttatgaccatgtcagagatgactacaaggttatt 300  Q
    ||||||||||||||||||||||||||| ||||||||||| ||| |||||    
T  30651129 tcttcatggatttggttatgaccatgttagagatgactataagattatt 30651177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 31777475 - 31777523
Alignment:
Q  252 tcttcatggatttggttatgaccatgtcagagatgactacaaggttatt 300  Q
    ||||||||||||||||||||||||||| ||||||||||| ||| |||||    
T  31777475 tcttcatggatttggttatgaccatgttagagatgactataagattatt 31777523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 373 - 414
Target Start/End: Original strand, 32642640 - 32642681
Alignment:
Q  373 ttttgggagatatatagcctaagaagtaactcttggagaaaa 414  Q
    |||||||||||||||||  |||||||||||||||||||||||    
T  32642640 ttttgggagatatatagtttaagaagtaactcttggagaaaa 32642681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 370 - 414
Target Start/End: Original strand, 37512595 - 37512639
Alignment:
Q  370 tcattttgggagatatatagcctaagaagtaactcttggagaaaa 414  Q
    |||| |||||| ||||||||||||||||| |||||||||||||||    
T  37512595 tcatgttgggatatatatagcctaagaagcaactcttggagaaaa 37512639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 250 - 302
Target Start/End: Complemental strand, 42630114 - 42630062
Alignment:
Q  250 tgtcttcatggatttggttatgaccatgtcagagatgactacaaggttattcg 302  Q
    |||||||||||||||||||||||||| || | |||||||||||| || |||||    
T  42630114 tgtcttcatggatttggttatgaccaagttaaagatgactacaaagtgattcg 42630062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 664 - 714
Target Start/End: Original strand, 9764510 - 9764560
Alignment:
Q  664 atatcgatattgggtgaaattggtgtcaaagaatcatggattacactcttc 714  Q
    ||||| || ||||||||| |||||||||| ||||||||||||| |||||||    
T  9764510 atatcaattttgggtgaacttggtgtcaaggaatcatggattagactcttc 9764560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 370 - 428
Target Start/End: Original strand, 42406384 - 42406442
Alignment:
Q  370 tcattttgggagatatatagcctaagaagtaactcttggagaaaagttatttttgatat 428  Q
    ||||| ||||||||||||||| ||||||| ||||||||||| ||| ||| | |||||||    
T  42406384 tcattctgggagatatatagcataagaagcaactcttggaggaaaattaatattgatat 42406442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 372 - 406
Target Start/End: Original strand, 42414484 - 42414518
Alignment:
Q  372 attttgggagatatatagcctaagaagtaactctt 406  Q
    ||||||||||||||||||||| |||||||||||||    
T  42414484 attttgggagatatatagccttagaagtaactctt 42414518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 371 - 409
Target Start/End: Complemental strand, 42565337 - 42565299
Alignment:
Q  371 cattttgggagatatatagcctaagaagtaactcttgga 409  Q
    ||||||||||||| |||||||||||||| ||||||||||    
T  42565337 cattttgggagatttatagcctaagaagcaactcttgga 42565299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 663 - 724
Target Start/End: Complemental strand, 28867178 - 28867117
Alignment:
Q  663 catatcgatattgggtgaaattggtgtcaaagaatcatggattacactcttcgatattggac 724  Q
    |||||| || |||||||||||||||||  | ||||||||| ||| ||||||| |||||||||    
T  28867178 catatcaatcttgggtgaaattggtgttgaggaatcatgggttagactcttcaatattggac 28867117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 375 - 414
Target Start/End: Complemental strand, 25319667 - 25319628
Alignment:
Q  375 ttgggagatatatagcctaagaagtaactcttggagaaaa 414  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  25319667 ttgggagatatatagcctaagaagtaactcatggagaaaa 25319628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 375 - 414
Target Start/End: Complemental strand, 26149360 - 26149321
Alignment:
Q  375 ttgggagatatatagcctaagaagtaactcttggagaaaa 414  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  26149360 ttgggagatatatagcctaagaagtaactcatggagaaaa 26149321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 251 - 302
Target Start/End: Original strand, 29299624 - 29299675
Alignment:
Q  251 gtcttcatggatttggttatgaccatgtcagagatgactacaaggttattcg 302  Q
    |||||||||||||||||||||||| ||| | | ||||||||||||| |||||    
T  29299624 gtcttcatggatttggttatgaccttgttaaaaatgactacaaggtcattcg 29299675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 376 - 410
Target Start/End: Complemental strand, 32745250 - 32745216
Alignment:
Q  376 tgggagatatatagcctaagaagtaactcttggag 410  Q
    ||||||||||||||||||||||||||||| |||||    
T  32745250 tgggagatatatagcctaagaagtaactcctggag 32745216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 373 - 414
Target Start/End: Complemental strand, 21378825 - 21378784
Alignment:
Q  373 ttttgggagatatatagcctaagaagtaactcttggagaaaa 414  Q
    |||||||||||||||| | |||||||||| ||||||||||||    
T  21378825 ttttgggagatatataacttaagaagtaattcttggagaaaa 21378784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 251 - 308
Target Start/End: Complemental strand, 29149242 - 29149185
Alignment:
Q  251 gtcttcatggatttggttatgaccatgtcagagatgactacaaggttattcggcatgt 308  Q
    |||||||||||||||||||||||||||| | | | ||||| || || |||||||||||    
T  29149242 gtcttcatggatttggttatgaccatgttataaacgactataatgtcattcggcatgt 29149185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 251 - 308
Target Start/End: Complemental strand, 34278992 - 34278935
Alignment:
Q  251 gtcttcatggatttggttatgaccatgtcagagatgactacaaggttattcggcatgt 308  Q
    |||||||||||||||||||| ||||||| | | ||||||| || || |||||||||||    
T  34278992 gtcttcatggatttggttataaccatgttacaaatgactataatgtcattcggcatgt 34278935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 376 - 414
Target Start/End: Complemental strand, 40184 - 40146
Alignment:
Q  376 tgggagatatatagcctaagaagtaactcttggagaaaa 414  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  40184 tgggagatatatagcctaagaagtaactcgtggagaaaa 40146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 376 - 410
Target Start/End: Complemental strand, 33833 - 33799
Alignment:
Q  376 tgggagatatatagcctaagaagtaactcttggag 410  Q
    ||||||||||||||||||||||||||||| |||||    
T  33833 tgggagatatatagcctaagaagtaactcgtggag 33799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 256 - 290
Target Start/End: Original strand, 344684 - 344718
Alignment:
Q  256 catggatttggttatgaccatgtcagagatgacta 290  Q
    |||||||||||||||||||||||||||||||||||    
T  344684 catggatttggttatgaccatgtcagagatgacta 344718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 373 - 414
Target Start/End: Complemental strand, 51875078 - 51875037
Alignment:
Q  373 ttttgggagatatatagcctaagaagtaactcttggagaaaa 414  Q
    |||||||||||||||||| |||||||||| ||||||||||||    
T  51875078 ttttgggagatatatagcttaagaagtaattcttggagaaaa 51875037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 373 - 410
Target Start/End: Complemental strand, 22535554 - 22535517
Alignment:
Q  373 ttttgggagatatatagcctaagaagtaactcttggag 410  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  22535554 ttttgggagatatacagccttagaagtaactcttggag 22535517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 25627761 - 25627807
Alignment:
Q  253 cttcatggatttggttatgaccatgtcagagatgactacaaggttat 299  Q
    |||||||||||||||||||||||||  ||||||||||| ||| ||||    
T  25627761 cttcatggatttggttatgaccatgctagagatgactataagattat 25627807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 373 - 414
Target Start/End: Complemental strand, 5393791 - 5393750
Alignment:
Q  373 ttttgggagatatatagcctaagaagtaactcttggagaaaa 414  Q
    ||||||||||||||||||||| | |||||||| |||||||||    
T  5393791 ttttgggagatatatagcctacggagtaactcatggagaaaa 5393750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 373 - 410
Target Start/End: Original strand, 5442080 - 5442117
Alignment:
Q  373 ttttgggagatatatagcctaagaagtaactcttggag 410  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  5442080 ttttgggagatatatagcctacgaagtaactcgtggag 5442117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 373 - 410
Target Start/End: Original strand, 5451090 - 5451127
Alignment:
Q  373 ttttgggagatatatagcctaagaagtaactcttggag 410  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  5451090 ttttgggagatatatagcctacgaagtaactcgtggag 5451127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 253 - 290
Target Start/End: Original strand, 2703335 - 2703372
Alignment:
Q  253 cttcatggatttggttatgaccatgtcagagatgacta 290  Q
    |||||||||||||||||||||||||| || ||||||||    
T  2703335 cttcatggatttggttatgaccatgttagggatgacta 2703372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University