View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10396_high_14 (Length: 325)

Name: NF10396_high_14
Description: NF10396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10396_high_14
NF10396_high_14
[»] chr3 (31 HSPs)
chr3 (1-322)||(41080540-41080859)
chr3 (170-301)||(14623808-14623939)
chr3 (169-301)||(8076392-8076524)
chr3 (171-299)||(13898026-13898154)
chr3 (170-301)||(35536626-35536757)
chr3 (170-301)||(49607414-49607545)
chr3 (170-301)||(53982011-53982142)
chr3 (211-301)||(1758425-1758516)
chr3 (170-310)||(8956762-8956902)
chr3 (170-310)||(17470405-17470545)
chr3 (170-301)||(33644200-33644331)
chr3 (175-297)||(26754700-26754822)
chr3 (174-298)||(30801705-30801829)
chr3 (170-273)||(27714888-27714991)
chr3 (171-301)||(31456690-31456820)
chr3 (170-287)||(26141515-26141632)
chr3 (177-301)||(35093592-35093716)
chr3 (170-310)||(54868855-54868995)
chr3 (175-310)||(52629305-52629440)
chr3 (170-232)||(11095392-11095453)
chr3 (170-298)||(24699926-24700054)
chr3 (192-296)||(36331303-36331407)
chr3 (266-321)||(11140982-11141037)
chr3 (170-301)||(36707397-36707524)
chr3 (223-297)||(48375679-48375754)
chr3 (170-287)||(11907371-11907488)
chr3 (217-298)||(25395305-25395387)
chr3 (170-301)||(33118819-33118951)
chr3 (193-291)||(25407126-25407225)
chr3 (261-301)||(43746430-43746470)
chr3 (169-296)||(47531864-47531991)
[»] chr2 (31 HSPs)
chr2 (170-301)||(17819973-17820104)
chr2 (171-320)||(41575138-41575288)
chr2 (170-301)||(9058480-9058611)
chr2 (170-301)||(33436069-33436200)
chr2 (173-301)||(28863458-28863586)
chr2 (170-301)||(7465704-7465835)
chr2 (170-301)||(17473020-17473151)
chr2 (170-301)||(20700815-20700946)
chr2 (170-296)||(26891478-26891604)
chr2 (192-297)||(3440001-3440106)
chr2 (173-301)||(19930789-19930917)
chr2 (214-297)||(3737986-3738070)
chr2 (170-301)||(13438343-13438474)
chr2 (192-296)||(2997461-2997565)
chr2 (170-301)||(10249351-10249482)
chr2 (170-293)||(40613879-40614002)
chr2 (170-301)||(40701478-40701609)
chr2 (170-320)||(33436211-33436361)
chr2 (170-296)||(45097709-45097835)
chr2 (211-296)||(38732394-38732480)
chr2 (170-293)||(32505625-32505748)
chr2 (170-296)||(28381629-28381755)
chr2 (170-296)||(30915463-30915589)
chr2 (170-296)||(42257193-42257319)
chr2 (170-296)||(43490121-43490247)
chr2 (251-301)||(44152008-44152058)
chr2 (170-274)||(5574484-5574588)
chr2 (211-296)||(13365393-13365479)
chr2 (170-232)||(27864704-27864765)
chr2 (170-301)||(4060685-4060816)
chr2 (260-296)||(41758677-41758713)
[»] chr8 (29 HSPs)
chr8 (170-301)||(37038479-37038610)
chr8 (171-301)||(5957831-5957961)
chr8 (170-296)||(43414555-43414681)
chr8 (169-301)||(1179909-1180041)
chr8 (170-301)||(12831047-12831178)
chr8 (170-296)||(40423917-40424043)
chr8 (192-301)||(8841401-8841510)
chr8 (170-301)||(14547922-14548053)
chr8 (170-301)||(34012265-34012396)
chr8 (170-296)||(16383377-16383503)
chr8 (170-294)||(15197333-15197457)
chr8 (170-301)||(504090-504221)
chr8 (214-297)||(15258902-15258986)
chr8 (170-301)||(17443825-17443956)
chr8 (170-301)||(23122566-23122697)
chr8 (170-296)||(34307216-34307342)
chr8 (170-292)||(4854841-4854963)
chr8 (215-301)||(9122229-9122316)
chr8 (170-296)||(16056375-16056501)
chr8 (170-296)||(24307767-24307893)
chr8 (170-296)||(30479448-30479574)
chr8 (175-296)||(10621061-10621182)
chr8 (170-294)||(42221515-42221639)
chr8 (170-301)||(10284600-10284731)
chr8 (170-296)||(15048155-15048281)
chr8 (170-230)||(20074975-20075034)
chr8 (259-301)||(42354557-42354599)
chr8 (169-253)||(14055610-14055693)
chr8 (170-301)||(44507056-44507187)
[»] chr6 (17 HSPs)
chr6 (170-301)||(31952999-31953130)
chr6 (170-301)||(32869678-32869809)
chr6 (212-298)||(12732523-12732610)
chr6 (170-301)||(17598554-17598685)
chr6 (173-296)||(22880632-22880755)
chr6 (165-296)||(30341334-30341465)
chr6 (170-296)||(15507998-15508124)
chr6 (170-296)||(15990016-15990142)
chr6 (174-301)||(28536457-28536582)
chr6 (170-301)||(11427616-11427749)
chr6 (170-296)||(31976248-31976374)
chr6 (170-310)||(6209425-6209565)
chr6 (170-301)||(29857827-29857958)
chr6 (215-298)||(30870058-30870142)
chr6 (186-296)||(4231564-4231674)
chr6 (175-301)||(9379681-9379807)
chr6 (212-310)||(23128087-23128186)
[»] chr4 (36 HSPs)
chr4 (170-301)||(50052397-50052528)
chr4 (170-321)||(3481654-3481805)
chr4 (170-301)||(29239886-29240017)
chr4 (170-301)||(50526140-50526271)
chr4 (170-301)||(6034044-6034175)
chr4 (208-310)||(48647686-48647789)
chr4 (169-301)||(41236346-41236478)
chr4 (170-301)||(480416-480547)
chr4 (210-301)||(28480237-28480329)
chr4 (210-301)||(28481112-28481204)
chr4 (210-301)||(28481987-28482079)
chr4 (170-293)||(48183026-48183149)
chr4 (170-320)||(29234195-29234345)
chr4 (170-296)||(54473507-54473633)
chr4 (170-296)||(55475191-55475317)
chr4 (215-296)||(18769021-18769103)
chr4 (161-310)||(42044327-42044476)
chr4 (192-296)||(17983717-17983821)
chr4 (170-296)||(55079687-55079814)
chr4 (170-293)||(11511439-11511562)
chr4 (170-301)||(23608235-23608366)
chr4 (170-293)||(24995084-24995207)
chr4 (170-296)||(19670690-19670816)
chr4 (192-296)||(50813866-50813970)
chr4 (215-298)||(18769153-18769237)
chr4 (170-296)||(44536720-44536845)
chr4 (170-241)||(29547989-29548059)
chr4 (193-279)||(29977908-29977994)
chr4 (211-296)||(29589714-29589800)
chr4 (170-232)||(40574779-40574840)
chr4 (192-296)||(18924469-18924573)
chr4 (170-293)||(47104544-47104667)
chr4 (170-296)||(47986208-47986334)
chr4 (170-232)||(31910192-31910253)
chr4 (192-241)||(32766980-32767028)
chr4 (169-241)||(8343193-8343264)
[»] chr1 (25 HSPs)
chr1 (170-301)||(51898652-51898783)
chr1 (170-301)||(47452289-47452420)
chr1 (170-310)||(9474836-9474976)
chr1 (170-301)||(27564704-27564835)
chr1 (170-301)||(37649198-37649329)
chr1 (170-296)||(2581915-2582041)
chr1 (170-296)||(32813247-32813373)
chr1 (175-301)||(44453984-44454110)
chr1 (173-301)||(44548345-44548473)
chr1 (170-296)||(5958974-5959100)
chr1 (170-296)||(38595154-38595280)
chr1 (170-296)||(50590974-50591100)
chr1 (170-301)||(8346356-8346488)
chr1 (169-296)||(3000318-3000445)
chr1 (170-296)||(41608467-41608593)
chr1 (212-301)||(13414802-13414892)
chr1 (170-298)||(6260870-6260998)
chr1 (170-310)||(50630458-50630598)
chr1 (170-301)||(38632290-38632421)
chr1 (170-301)||(48716251-48716382)
chr1 (214-298)||(48489343-48489428)
chr1 (170-301)||(41758805-41758936)
chr1 (171-301)||(11152347-11152476)
chr1 (170-241)||(23597121-23597191)
chr1 (170-301)||(43132-43263)
[»] chr7 (32 HSPs)
chr7 (170-299)||(18207180-18207308)
chr7 (212-301)||(36208214-36208304)
chr7 (170-310)||(35137533-35137673)
chr7 (170-301)||(19329842-19329973)
chr7 (170-301)||(41423682-41423813)
chr7 (170-310)||(38267040-38267180)
chr7 (170-301)||(8080352-8080483)
chr7 (170-296)||(7389389-7389515)
chr7 (170-296)||(40846087-40846213)
chr7 (170-274)||(3434562-3434666)
chr7 (173-301)||(3783998-3784126)
chr7 (170-298)||(35468827-35468955)
chr7 (170-274)||(36361909-36362013)
chr7 (170-310)||(38837217-38837357)
chr7 (170-301)||(4999483-4999614)
chr7 (193-296)||(8238236-8238339)
chr7 (193-291)||(2318222-2318320)
chr7 (170-296)||(22343361-22343487)
chr7 (212-310)||(27744269-27744368)
chr7 (170-296)||(32564400-32564526)
chr7 (170-296)||(41915741-41915867)
chr7 (211-296)||(16374798-16374884)
chr7 (159-241)||(46374832-46374913)
chr7 (170-274)||(36362026-36362130)
chr7 (170-294)||(39255900-39256023)
chr7 (170-301)||(19436156-19436287)
chr7 (175-296)||(35522881-35523002)
chr7 (215-294)||(3694411-3694491)
chr7 (170-301)||(40957707-40957838)
chr7 (161-232)||(10343602-10343672)
chr7 (170-296)||(38044197-38044323)
chr7 (219-296)||(32951467-32951545)
[»] chr5 (24 HSPs)
chr5 (170-310)||(2740274-2740414)
chr5 (173-301)||(18520853-18520981)
chr5 (170-296)||(6679698-6679824)
chr5 (170-301)||(35943861-35943992)
chr5 (170-296)||(2252142-2252268)
chr5 (165-296)||(3921239-3921370)
chr5 (170-301)||(33149607-33149738)
chr5 (170-301)||(33825293-33825424)
chr5 (170-301)||(36732911-36733042)
chr5 (170-301)||(40145407-40145538)
chr5 (170-296)||(28177775-28177901)
chr5 (170-296)||(42414276-42414402)
chr5 (170-301)||(14831814-14831945)
chr5 (170-301)||(35785199-35785330)
chr5 (251-310)||(2177445-2177504)
chr5 (170-310)||(13811652-13811792)
chr5 (171-230)||(36875644-36875702)
chr5 (170-291)||(6259980-6260101)
chr5 (175-232)||(10356639-10356696)
chr5 (215-298)||(21370048-21370132)
chr5 (220-282)||(25831334-25831397)
chr5 (170-296)||(26720516-26720642)
chr5 (170-296)||(26990265-26990391)
chr5 (215-301)||(31009032-31009119)
[»] scaffold1268 (1 HSPs)
scaffold1268 (170-301)||(898-1029)
[»] scaffold1267 (1 HSPs)
scaffold1267 (170-301)||(898-1029)
[»] scaffold0321 (1 HSPs)
scaffold0321 (170-310)||(10069-10209)
[»] scaffold0237 (1 HSPs)
scaffold0237 (170-301)||(4029-4160)
[»] scaffold0018 (1 HSPs)
scaffold0018 (195-292)||(152523-152620)


Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 41080540 - 41080859
Alignment:
Q  1 cttattcggactcatacgtctgtttaacttcacataactatttgcagtgtggaaagaaaagaagttacccttcacaaatggatgcagattctttatgttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41080540 cttattcggactcatacgtctgtttaacttcacataactatttgcagtgtggaaagaaaagaagttacccttcacaaatggatgcagattctttacgttt 41080639  T
Q  101 gaagaagttgaagggaaatttcttattaggtattattatgatatgccaactttgtgtgactttaacaacgagtaatgatacatggacatctttaggtggc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| | | ||||||||||||||||||||||||||| |||||| ||| || ||    
T  41080640 gaagaagttgaagggaaatttcttattaggtattattatgatataccaactctctatgactttaacaacgagtaatgatacatagacatcctta-gtagc 41080738  T
Q  201 aaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggacccacacgagcacattttctctttcatctccttttctctcttcctagtgc 300  Q
    |||||||||| ||||||||||| ||||||||| | ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |    
T  41080739 aaaacaccct-ttgacacccacgcaaaaatctgatatgtggtcatgtggacccacacaagcacattttctctttcatctcctcttctctcttcctagtac 41080837  T
Q  301 aaaggatgtatgagaataaaga 322  Q
    | ||| ||||||||||||||||    
T  41080838 atagggtgtatgagaataaaga 41080859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 14623939 - 14623808
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggacc-cacacgagcacatttt 268  Q
    |||||||||||||| |||||| ||||||||||| |||||| ||||||||||||| |||||||| ||||||| | ||||||||| ||||| |||||| |||    
T  14623939 gagtaatgatacatagacatccttaggtggcaatacaccc-cttgacacccacataaaaatctgacatgtgttcatgtggacctcacacaagcacacttt 14623841  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||||||| || ||||||||| ||||||||    
T  14623840 ctctttcatcttctcttctctctttctagtgca 14623808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 301
Target Start/End: Original strand, 8076392 - 8076524
Alignment:
Q  169 cgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacattt 267  Q
    |||||||||||||||  ||| | ||||||||||  ||||||| ||||||||||||||||||||||||| || || | ||||||||  ||| |||||| ||    
T  8076392 cgagtaatgatacataaacacccttaggtggcagtacaccct-ttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactt 8076490  T
Q  268 tctctttcatctccttttctctcttcctagtgca 301  Q
    |||||||| |||||| ||||||||||||||||||    
T  8076491 tctctttcctctcctcttctctcttcctagtgca 8076524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 171 - 299
Target Start/End: Complemental strand, 13898154 - 13898026
Alignment:
Q  171 agtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggacc-cacacgagcacattttc 269  Q
    |||||||||| ||  ||||| ||||||||||| |||||| ||||||||||||| |||||||| ||| ||| | ||||||||| ||||| |||||| ||||    
T  13898154 agtaatgatagataaacatccttaggtggcaatacaccc-cttgacacccacataaaaatctgacacgtgttcatgtggacctcacacaagcacactttc 13898056  T
Q  270 tctttcatctccttttctctcttcctagtg 299  Q
    |||||||||| || |||||||| |||||||    
T  13898055 tctttcatcttctcttctctctccctagtg 13898026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 35536626 - 35536757
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacatttt 268  Q
    |||||||||||||| |||||| ||| ||||||| ||||| | |||||||||||| |||||| | ||| ||||| |||||||||  |||| |||||| ||     
T  35536626 gagtaatgatacatagacatccttatgtggcaatacaccat-ttgacacccacataaaaatgtgacacgtggtcatgtggaccttacacaagcacacttc 35536724  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||||||| || ||||||||||||||||||    
T  35536725 ctctttcatcttctcttctctcttcctagtgca 35536757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 49607414 - 49607545
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||||||| |||||| |||    
T  49607414 gagtaatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggatcccacacaagcacacttt 49607512  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||  |||||| || |||||||||| ||||    
T  49607513 ctcttttctctcctcttttctcttcctaatgca 49607545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 53982011 - 53982142
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  53982011 gagtaatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 53982109  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||  |||||| ||||||||||||| ||||    
T  53982110 ctcttttctctcctcttctctcttcctaatgca 53982142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 211 - 301
Target Start/End: Complemental strand, 1758516 - 1758425
Alignment:
Q  211 cttgacacccacacaaaaatctaacatgtggtaatgtggac-ccacacgagcacattttctctttcatctccttttctctcttcctagtgca 301  Q
    |||||||||||||||||||||| |||| |||| | |||||| |||||| | |||||||||||||||||||||| ||||||||||||| ||||    
T  1758516 cttgacacccacacaaaaatctgacatatggttacgtggactccacacaaacacattttctctttcatctcctcttctctcttcctaatgca 1758425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 170 - 310
Target Start/End: Original strand, 8956762 - 8956902
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacatttt 268  Q
    |||||||||||||| |||||| ||| ||||||| ||| ||| |||||||||||| |||||| | ||| ||| | |||||||||  |||| |||||| ||     
T  8956762 gagtaatgatacatagacatccttatgtggcaatacatcct-ttgacacccacataaaaatgtgacacgtgttcatgtggaccttacacaagcacacttc 8956860  T
Q  269 ctctttcatctccttttctctcttcctagtgcaaaggatgta 310  Q
    ||||||||||| || |||||||||||||||||| ||| ||||    
T  8956861 ctctttcatcttctcttctctcttcctagtgcacagggtgta 8956902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 170 - 310
Target Start/End: Original strand, 17470405 - 17470545
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| ||||||||||||| ||| ||| || |||||||||||||||||| ||| || || | ||||| ||||||| |||||| |||    
T  17470405 gagtaatgatacatagacacctttaggtggcaataca-ccttttaacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacacttt 17470503  T
Q  269 ctctttcatctccttttctctcttcctagtgcaaaggatgta 310  Q
    ||||||  |||| | ||||||||||||| ||||  |||||||    
T  17470504 ctcttttctctcatcttctctcttcctaatgcatgggatgta 17470545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 33644200 - 33644331
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 268  Q
    |||||||||||||| |||| | || |||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||||||  ||| |||||| |||    
T  33644200 gagtaatgatacatagacacccttgggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 33644298  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||  |||||| ||||||||||||| ||||    
T  33644299 ctcttttctctcctcttctctcttcctaatgca 33644331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 297
Target Start/End: Original strand, 26754700 - 26754822
Alignment:
Q  175 atgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacattttctctt 273  Q
    ||||| ||| |||| | ||||||||||| ||||||| | |||| |||||||||||||| ||||||||| |  |||||||  ||| |||||||||||||||    
T  26754700 atgattcatagacacccttaggtggcaatacaccct-tggacatccacacaaaaatctgacatgtggtcacatggaccccgcacaagcacattttctctt 26754798  T
Q  274 tcatctccttttctctcttcctag 297  Q
    || |||||| ||||||||||||||    
T  26754799 tcctctcctcttctctcttcctag 26754822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 298
Target Start/End: Complemental strand, 30801829 - 30801705
Alignment:
Q  174 aatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacattttctct 272  Q
    |||||||||| |||| | |||||||  || ||||||| |||| |||||||||||||| | |||||| || || ||||||| |||| ||||||||||||||    
T  30801829 aatgatacatagacacccttaggtgataatacaccct-ttgatacccacacaaaaatatgacatgtagtcatatggaccccacacaagcacattttctct 30801731  T
Q  273 ttcatctccttttctctcttcctagt 298  Q
    ||| |||| | |||||||||||||||    
T  30801730 ttcctctcatcttctctcttcctagt 30801705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 273
Target Start/End: Complemental strand, 27714991 - 27714888
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| |||||||||| || ||||||| ||||||||||||||||||||| ||| || || ||||||| ||| ||| |||||| |||    
T  27714991 gagtaatgatacatagacacctttaggtggtaatacaccct-ttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacacttt 27714893  T
Q  269 ctctt 273  Q
    |||||    
T  27714892 ctctt 27714888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 171 - 301
Target Start/End: Original strand, 31456690 - 31456820
Alignment:
Q  171 agtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttc 269  Q
    ||||||||||||| |||| |  |||| ||||| ||||||| ||||||||||||||||||||| ||| || || ||||||| ||| ||| |||||| ||||    
T  31456690 agtaatgatacatagacacccataggcggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttc 31456788  T
Q  270 tctttcatctccttttctctcttcctagtgca 301  Q
    |||||  |||||| || |||||||||| ||||    
T  31456789 tcttttctctcctcttttctcttcctaatgca 31456820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 287
Target Start/End: Complemental strand, 26141632 - 26141515
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| ||||||||| |||||| ||||||||||| ||||||| || |||||||||||||||||| ||| ||||| |  |||| ||||||| |||||| |||    
T  26141632 gagttatgatacatagacatccttaggtggcaatacaccct-ttaacacccacacaaaaatctgacacgtggtcacatggaccccacacaagcacacttt 26141534  T
Q  269 ctctttcatctccttttct 287  Q
    ||||||  |||||| ||||    
T  26141533 ctcttttctctcctcttct 26141515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 177 - 301
Target Start/End: Original strand, 35093592 - 35093716
Alignment:
Q  177 gatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggac-ccacacgagcacattttctctttc 275  Q
    ||||||| |||| ||||||||| ||| ||| | | |||||| |||| ||||||||| ||||||||| ||||| || ||| || |||||| |||||||| |    
T  35093592 gatacatagacaactttaggtgacaatacaacat-ttgacatccacgcaaaaatctgacatgtggtcatgtgaactccatacaagcacactttctcttgc 35093690  T
Q  276 atctccttttctctcttcctagtgca 301  Q
    ||||  ||||||||||||||||||||    
T  35093691 atctttttttctctcttcctagtgca 35093716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 170 - 310
Target Start/End: Complemental strand, 54868995 - 54868855
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| | ||||||||||| ||| ||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| | |||| |||    
T  54868995 gagtaatgatacatagacacccttaggtggcaataca-ccttttgacacccacacaaaaatctgacacgtagttacgtggaccccgcacaatcacacttt 54868897  T
Q  269 ctctttcatctccttttctctcttcctagtgcaaaggatgta 310  Q
    ||||||  |||| | ||||||||||||| |||| ||| ||||    
T  54868896 ctcttttctctcatcttctctcttcctaatgcatagggtgta 54868855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 310
Target Start/End: Original strand, 52629305 - 52629440
Alignment:
Q  175 atgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctt 273  Q
    ||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| |||  || |||||| ||||||||    
T  52629305 atgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacactttctctt 52629403  T
Q  274 tcatctccttttctctcttcctagtgcaaaggatgta 310  Q
    |  |||| | ||||||||||||| ||||  |||||||    
T  52629404 ttctctcatcttctctcttcctaatgcatgggatgta 52629440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 11095453 - 11095392
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatct 232  Q
    |||||||||||||| |||| | ||||||||||| ||||||| |||||||||||||||||||||    
T  11095453 gagtaatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatct 11095392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 298
Target Start/End: Complemental strand, 24700054 - 24699926
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacatttt 268  Q
    |||||||||||||| |||||| |||| |||||| ||| ||| |||||||||||| ||||||||  || ||||  | ||||||||   || | |||| |||    
T  24700054 gagtaatgatacatagacatccttagttggcaataca-ccttttgacacccacataaaaatctggcacgtggccacgtggaccctgtacaaacacacttt 24699956  T
Q  269 ctctttcatctccttttctctcttcctagt 298  Q
    ||||||| |||||| |||||||||||||||    
T  24699955 ctctttcctctcctcttctctcttcctagt 24699926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 296
Target Start/End: Complemental strand, 36331407 - 36331303
Alignment:
Q  192 ttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctc 290  Q
    |||||||||||  ||||| |||||||||||||||||||||| ||||||||  || |||| ||| ||| || ||| |||||||||| ||| || |||||||    
T  36331407 ttaggtggcaatgcaccc-cttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctctttcttcttctcttctctc 36331309  T
Q  291 ttccta 296  Q
    ||||||    
T  36331308 ttccta 36331303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 321
Target Start/End: Complemental strand, 11141037 - 11140982
Alignment:
Q  266 tttctctttcatctccttttctctcttcctagtgcaaaggatgtatgagaataaag 321  Q
    ||||||||||||||||||||||||||||||||| ||  || ||||||||| |||||    
T  11141037 tttctctttcatctccttttctctcttcctagtacatggggtgtatgagactaaag 11140982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 36707524 - 36707397
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggacccacacgagcacattttc 269  Q
    |||||||||||||| || | | ||||||| ||| ||||||| |||||| |||||||||||||| ||| || || | ||||| ||   || ||||| ||||    
T  36707524 gagtaatgatacatagatacccttaggtgacaatacaccct-ttgacatccacacaaaaatctgacacgtagttacgtggatcc---cgcgcacactttc 36707429  T
Q  270 tctttcatctccttttctctcttcctagtgca 301  Q
    |||||  |||||| ||||||||||||| ||||    
T  36707428 tcttttctctcctcttctctcttcctaatgca 36707397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 297
Target Start/End: Complemental strand, 48375754 - 48375679
Alignment:
Q  223 acaaaaatctaacatgtggtaatgtggaccca-cacgagcacattttctctttcatctccttttctctcttcctag 297  Q
    |||||||||| || |||||| |  |||||||  ||| ||||||||||||||||| |||||| ||||||||||||||    
T  48375754 acaaaaatctgacgtgtggtcacatggaccccgcacaagcacattttctctttcctctcctcttctctcttcctag 48375679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 287
Target Start/End: Original strand, 11907371 - 11907488
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| ||||||||| |||| | ||||||| ||| |||| | ||  |||| ||||||||||||| ||||||||| || |||| ||| ||| ||||||||||    
T  11907371 gagttatgatacatagacacccttaggtgacaatacacac-ctgaacactcacacaaaaatctgacatgtggtcatatggaccccgcacaagcacatttt 11907469  T
Q  269 ctctttcatctccttttct 287  Q
    ||||||  |||||| ||||    
T  11907470 ctcttttctctcctcttct 11907488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 298
Target Start/End: Complemental strand, 25395387 - 25395305
Alignment:
Q  217 acccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacattttctctttcatctccttttctctcttcctagt 298  Q
    |||||||||||||||| ||||||||  || | ||||| |||| | ||||||||||||||||||| || || |||||| |||||    
T  25395387 acccacacaaaaatctgacatgtggctatatagaccccacacaaacacattttctctttcatcttctcttttctctttctagt 25395305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 33118951 - 33118819
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| ||||||||| |||| | ||||||| ||| ||||||| ||||||||||||||||||| | ||| || || | ||||| ||| ||  | |||| |||    
T  33118951 gagttatgatacatagacacccttaggtgacaatacaccct-ttgacacccacacaaaaatttgacacgtagtcacgtggatccctcagaaacacacttt 33118853  T
Q  269 ctctttcatctcct-tttctctcttcctagtgca 301  Q
    ||||||| ||||||  |||||||| |||||||||    
T  33118852 ctctttcctctcctccttctctctccctagtgca 33118819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 291
Target Start/End: Complemental strand, 25407225 - 25407126
Alignment:
Q  193 taggtggcaaaacaccctcttgacacccacacaaaaa-tctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctc 290  Q
    |||||||||| | |||| |||||||| |||||||||| ||| ||| ||| | || |||| ||||||| | |||| ||||||||||||||||| |||||||    
T  25407225 taggtggcaatataccc-cttgacacacacacaaaaaatctgacacgtgatcatatggatcccacacaaacacactttctctttcatctcctcttctctc 25407127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 43746430 - 43746470
Alignment:
Q  261 cacattttctctttcatctccttttctctcttcctagtgca 301  Q
    |||| ||||||||||||||||| |||| |||||||||||||    
T  43746430 cacaatttctctttcatctcctcttctttcttcctagtgca 43746470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 296
Target Start/End: Original strand, 47531864 - 47531991
Alignment:
Q  169 cgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacattt 267  Q
    ||||| ||||||||| |||||| |||| |||||| ||||| | || ||| |||||||| ||||| ||| ||||  || || ||||  ||| |||||| ||    
T  47531864 cgagttatgatacatagacatccttagatggcaatacacctt-ttaacatccacacaagaatctgacacgtggccatatgaaccccgcacaagcacactt 47531962  T
Q  268 tctctttcatctccttttctctcttccta 296  Q
    |||||||  |||||| |||||||||||||    
T  47531963 tctcttttctctcctattctctcttccta 47531991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 17820104 - 17819973
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacatttt 268  Q
    |||| ||||||||| |||| || |||||||||| |||||| |||||||||||||||||||||| ||||||||| | |||||||| |||| | ||||||||    
T  17820104 gagttatgatacatagacaactataggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtggttacgtggaccccacacaaacacatttt 17820006  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    |||||||||||||| ||||||||||||| ||||    
T  17820005 ctctttcatctcctcttctctcttcctaatgca 17819973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 171 - 320
Target Start/End: Original strand, 41575138 - 41575288
Alignment:
Q  171 agtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc--acacgagcacatttt 268  Q
    ||||||||||||| |||||| |||| ||| || ||||||| ||||||  ||||||||||| | ||||||||| ||||||||||  |||| |||||| |||    
T  41575138 agtaatgatacatagacatccttagatggtaatacaccct-ttgacattcacacaaaaatttgacatgtggtcatgtggacccctacacaagcacacttt 41575236  T
Q  269 ctctttcatctccttttctctcttcctagtgcaaaggatgtatgagaataaa 320  Q
    |||||||||||||| ||||||| ||||| ||||   ||||||||||||||||    
T  41575237 ctctttcatctcctcttctctcgtcctaatgcatgagatgtatgagaataaa 41575288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 9058480 - 9058611
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||||||| ||| || || ||||||| ||| ||| |||||| |||    
T  9058480 gagtaatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacacttt 9058578  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||  |||||| ||||||||||||| ||||    
T  9058579 ctcttttctctcctcttctctcttcctaatgca 9058611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 33436200 - 33436069
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||||||||||| || || | ||||| ||| ||| |||||| |||    
T  33436200 gagtaatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacacttt 33436102  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||| |||| | ||||||||||||| ||||    
T  33436101 ctctttcctctcatcttctctcttcctaatgca 33436069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 173 - 301
Target Start/End: Original strand, 28863458 - 28863586
Alignment:
Q  173 taatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacattttctc 271  Q
    ||||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||||||  ||| |||||| ||||||    
T  28863458 taatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctc 28863556  T
Q  272 tttcatctccttttctctcttcctagtgca 301  Q
    ||| ||||||| ||||||||||||| ||||    
T  28863557 ttttatctcctcttctctcttcctaatgca 28863586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 7465835 - 7465704
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacatttt 268  Q
    |||||||||||||| |||| | |||| |||||| ||||||| ||||||||||||||||||||| ||| || || | |||||||| |||| |||||| |||    
T  7465835 gagtaatgatacatagacacccttagatggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacacttt 7465737  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    |||||| ||||| | ||||||||||||| ||||    
T  7465736 ctcttttatctcttcttctctcttcctaatgca 7465704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 17473020 - 17473151
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| | |||| |||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  17473020 gagtaatgatacatagacacccttagatggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacacttt 17473118  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||  |||||| ||||||||||||| ||||    
T  17473119 ctcttttctctcctcttctctcttcctaatgca 17473151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 20700815 - 20700946
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 268  Q
    |||||||||||||| |||||| ||| ||||||| ||||||| ||||| || |||||||||||| ||| || || | ||||||||  ||  |||||| |||    
T  20700815 gagtaatgatacatagacatccttatgtggcaatacaccct-ttgactcctacacaaaaatctgacacgtagtcacgtggaccccgcataagcacacttt 20700913  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||| |||||| ||||||||||||||||||    
T  20700914 ctctttcctctcctcttctctcttcctagtgca 20700946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 296
Target Start/End: Complemental strand, 26891604 - 26891478
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggacc-cacacgagcacatttt 268  Q
    |||| ||||||||| | || | ||||||||||| |||||| || ||||||||||||||||||| ||||||||| | ||||||| |  || ||||||||||    
T  26891604 gagttatgatacatagccacccttaggtggcaatacaccc-ctagacacccacacaaaaatctgacatgtggtcacgtggacctcgaacaagcacatttt 26891506  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||| ||| || |||||||||||||    
T  26891505 ctctttcctcttctcttctctcttccta 26891478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 192 - 297
Target Start/End: Original strand, 3440001 - 3440106
Alignment:
Q  192 ttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctc 290  Q
    ||||||||||| |||| | || ||||||||||||||||||||||||||| | | ||||| ||| ||| ||||||||||||||||| |||||| |||||||    
T  3440001 ttaggtggcaatacactc-ctggacacccacacaaaaatctaacatgtgattacgtggaccccgcacaagcacattttctctttcctctcctcttctctc 3440099  T
Q  291 ttcctag 297  Q
    || ||||    
T  3440100 tttctag 3440106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 301
Target Start/End: Complemental strand, 19930917 - 19930789
Alignment:
Q  173 taatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctc 271  Q
    ||||||||||| |||| | ||||||||||| ||||||| |||||| |||||||||||||| ||| || || ||||||| ||| ||| | |||| ||||||    
T  19930917 taatgatacatagacacccttaggtggcaatacaccct-ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaaacacactttctc 19930819  T
Q  272 tttcatctccttttctctcttcctagtgca 301  Q
    |||  |||||| ||||||||||||| ||||    
T  19930818 ttttctctcctcttctctcttcctaatgca 19930789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 297
Target Start/End: Original strand, 3737986 - 3738070
Alignment:
Q  214 gacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctcttcctag 297  Q
    ||||||||||||||||||| ||||||||| ||||||| ||| ||| |||||||||||| |||| |||||| |||| |||||||||    
T  3737986 gacacccacacaaaaatctgacatgtggtcatgtggaccccgcacaagcacattttctttttcctctcctcttctttcttcctag 3738070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 13438343 - 13438474
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 268  Q
    |||||||||||||| |||| | ||||||| ||| ||| ||| ||||||||||||||||||||| ||| || || | ||||||||  ||| |||||| |||    
T  13438343 gagtaatgatacatagacacccttaggtgacaatacatcct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 13438441  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||  |||||| ||||||||||||| ||||    
T  13438442 ctcttttctctcctcttctctcttcctaatgca 13438474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 192 - 296
Target Start/End: Complemental strand, 2997565 - 2997461
Alignment:
Q  192 ttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctc 290  Q
    ||||||||||| |||||| |||||||||||||||||||||| ||||||||  || |||| ||| ||| || ||| |||||||||| ||| || |||||||    
T  2997565 ttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctctttcttcttctcttctctc 2997467  T
Q  291 ttccta 296  Q
    ||||||    
T  2997466 ttccta 2997461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 10249482 - 10249351
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| | ||||||| ||| ||||| | ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  10249482 gagtaatgatacatagacacccttaggtgacaatacacctt-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 10249384  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||  |||||| || |||||||||| ||||    
T  10249383 ctcttttctctcctcttttctcttcctaatgca 10249351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 293
Target Start/End: Complemental strand, 40614002 - 40613879
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| ||||||||| |||||| ||||||||||| ||||||| ||||||||||||||||||||| ||| ||||  |  |||| ||| ||| |||||| |||    
T  40614002 gagttatgatacatagacatccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtggccacatggaccccgcacaagcacacttt 40613904  T
Q  269 ctctttcatctccttttctctcttc 293  Q
    ||||||  |||||| |||| |||||    
T  40613903 ctcttttctctcctattctttcttc 40613879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 40701478 - 40701609
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| | ||||||||||| ||| ||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| | |||| |||    
T  40701478 gagtaatgatacatagacacccttaggtggcaataca-ccttttgacacccacacaaaaatctgacacgtagttacgtggaccccgcacaatcacacttt 40701576  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||  |||| | ||||||||||||| ||||    
T  40701577 ctcttttctctcatcttctctcttcctaatgca 40701609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 320
Target Start/End: Original strand, 33436211 - 33436361
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggac-ccacacgagcacatttt 268  Q
    |||||||||||||| |||||| |||| |||||| ||| ||| |||||||||||| |||||||| ||| |||   ||||||||    ||| |||||| |||    
T  33436211 gagtaatgatacatagacatccttagatggcaataca-ccttttgacacccacataaaaatctgacacgtgaccatgtggactttgcacaagcacacttt 33436309  T
Q  269 ctctttcatctccttttctctcttcctagtgcaaaggatgtatgagaataaa 320  Q
    ||||||| | |||| ||||||||||||||| ||   | ||||||||||||||    
T  33436310 ctctttcctatcctcttctctcttcctagttcatgaggtgtatgagaataaa 33436361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 296
Target Start/End: Complemental strand, 45097835 - 45097709
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| |||||||||  ||||| ||||||||||| ||| || ||||||||||| |||||||||| ||||||||  || |||| ||| ||| || ||| |||    
T  45097835 gagttatgatacataaacatccttaggtggcaatacatcc-cttgacacccatacaaaaatctgacatgtggccatatggaccccgcacaagtacacttt 45097737  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||| ||| || |||||||||||||    
T  45097736 ctctttcttcttctcttctctcttccta 45097709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 296
Target Start/End: Original strand, 38732394 - 38732480
Alignment:
Q  211 cttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctcttccta 296  Q
    |||||||||||||||||||||| ||||||||| || |||| ||| ||| || ||| |||||||||| ||| || |||||||||||||    
T  38732394 cttgacacccacacaaaaatctgacatgtggtcatatggaccccgcacaagtacactttctctttcttcttctcttctctcttccta 38732480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 293
Target Start/End: Complemental strand, 32505748 - 32505625
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| | ||||||| ||| ||||| | ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  32505748 gagtaatgatacatagacacccttaggtgacaatacacctt-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 32505650  T
Q  269 ctctttcatctccttttctctcttc 293  Q
    || |||  |||||| ||||||||||    
T  32505649 ctattttctctcctcttctctcttc 32505625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 296
Target Start/End: Complemental strand, 28381755 - 28381629
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggac-ccacacgagcacatttt 268  Q
    |||||||||||||| |||| | ||||||||||| ||| ||| | ||||||||||||||||||| ||| || || |  ||||| || ||| |||||| |||    
T  28381755 gagtaatgatacatagacacccttaggtggcaataca-cctttcgacacccacacaaaaatctgacacgtagtcacatggactccgcacaagcacacttt 28381657  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||  |||| | |||||||||||||    
T  28381656 ctcttttctctcatcttctctcttccta 28381629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 296
Target Start/End: Original strand, 30915463 - 30915589
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| | ||||||||||| ||||||| ||||| |||||| |||||||| ||| || || | ||||| |||  || |||||| |||    
T  30915463 gagtaatgatacatagacacccttaggtggcaatacaccct-ttgacccccacataaaaatctgacacgtagtcacgtggaccccgtacaagcacacttt 30915561  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||  |||| | |||||||||||||    
T  30915562 ctcttttctctcatcttctctcttccta 30915589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 296
Target Start/End: Original strand, 42257193 - 42257319
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| ||||||||| |||||||||||||||||| ||| | | |||||||||||| |||||||| ||| ||||  |  |||| ||| ||| |||||| |||    
T  42257193 gagttatgatacatagacatctttaggtggcaatacatcat-ttgacacccacataaaaatctgacacgtggccacatggaccccgcacaagcacacttt 42257291  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||  |||||| |||| ||||||||    
T  42257292 ctcttttctctcctcttctttcttccta 42257319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 296
Target Start/End: Original strand, 43490121 - 43490247
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| |||||||||  ||| | ||||||| ||| |||||| |||||||||||||||||||||| ||||||||  || |||| ||| ||| || ||| |||    
T  43490121 gagttatgatacataaacacccttaggtgacaatacaccc-cttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacacttt 43490219  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
     |||||| ||| || |||||||||||||    
T  43490220 atctttcttcttctcttctctcttccta 43490247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 44152008 - 44152058
Alignment:
Q  251 cccacacgagcacattttctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||| |||||| ||||||||||||||||| ||||||||||||| ||||    
T  44152008 cccacacaagcacactttctctttcatctcctcttctctcttcctaatgca 44152058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 274
Target Start/End: Complemental strand, 5574588 - 5574484
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| ||||   ||||||||||| ||||||| |||||||||||| |||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  5574588 gagtaatgatacatagacactcttaggtggcaatacaccct-ttgacacccacataaaaatctgacacgtagtcacgtggatcccgcacaagcacacttt 5574490  T
Q  269 ctcttt 274  Q
    ||||||    
T  5574489 ctcttt 5574484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 296
Target Start/End: Original strand, 13365393 - 13365479
Alignment:
Q  211 cttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctcttccta 296  Q
    |||||||||||||||||||||| |||||||   || |||| ||| ||| || ||| |||||||||| ||| || |||||||||||||    
T  13365393 cttgacacccacacaaaaatctgacatgtgaccatatggaccccgcacaagtacactttctctttcttcttctcttctctcttccta 13365479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 27864704 - 27864765
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatct 232  Q
    |||||||||||||| |||| | ||| ||||||| ||||||| |||||| ||||||||||||||    
T  27864704 gagtaatgatacatagacacccttatgtggcaatacaccct-ttgacatccacacaaaaatct 27864765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 4060685 - 4060816
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| | ||||||| ||| ||| ||| |||||| |||||||||||||| ||| || || | ||||| ||| ||  |||||| |||    
T  4060685 gagtaatgatacatagacacccttaggtgacaataca-ccttttgacatccacacaaaaatctgacacgtagttacgtggatcccgcataagcacacttt 4060783  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    || |||  |||| | ||||||||||||| ||||    
T  4060784 cttttttctctcatcttctctcttcctaatgca 4060816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 296
Target Start/End: Original strand, 41758677 - 41758713
Alignment:
Q  260 gcacattttctctttcatctccttttctctcttccta 296  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  41758677 gcacattttctcttttatctcctcttctctcttccta 41758713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 37038479 - 37038610
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  37038479 gagtaatgatacatagacatctttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacacttt 37038577  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    || |||| |||||| ||||||||||||||||||    
T  37038578 ctatttcctctcctcttctctcttcctagtgca 37038610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 301
Target Start/End: Original strand, 5957831 - 5957961
Alignment:
Q  171 agtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttc 269  Q
    ||||||||||||| |||||  ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| | |||| ||||    
T  5957831 agtaatgatacatagacattcttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaatcacactttc 5957929  T
Q  270 tctttcatctccttttctctcttcctagtgca 301  Q
    |||||| |||||| ||||||||||||||||||    
T  5957930 tctttcctctcctcttctctcttcctagtgca 5957961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 170 - 296
Target Start/End: Complemental strand, 43414681 - 43414555
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| ||||||||| |||||| |||| |||||| ||||||| ||||||||||||||||||||||||| ||||| |  |||| ||| ||| |||||| |||    
T  43414681 gagttatgatacatagacatccttagatggcaacacaccct-ttgacacccacacaaaaatctaacacgtggtcacatggatcccgcacaagcacacttt 43414583  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||  |||||| |||||||||||||    
T  43414582 ctcttttctctcctcttctctcttccta 43414555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 301
Target Start/End: Complemental strand, 1180041 - 1179909
Alignment:
Q  169 cgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggac-ccacacgagcacattt 267  Q
    ||||||||||||||| |||| | |||||||| || ||||||| ||||||||||||||||||||| ||| || || |||||||  || ||| |||||| ||    
T  1180041 cgagtaatgatacatagacacccttaggtggtaatacaccct-ttgacacccacacaaaaatctgacacgtagtcatgtggattccgcacaagcacactt 1179943  T
Q  268 tctctttcatctccttttctctcttcctagtgca 301  Q
    |||||||  |||||| ||||||||||||| ||||    
T  1179942 tctcttttctctcctcttctctcttcctaatgca 1179909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 12831047 - 12831178
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 268  Q
    |||||||||||||| |||| | ||||||| ||| ||||||| ||||||||||||||||||||| ||| || || | ||||||||  ||| |||||| |||    
T  12831047 gagtaatgatacatagacacccttaggtgacaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 12831145  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||  |||||| ||||||||||||| ||||    
T  12831146 ctcttttctctcctcttctctcttcctaatgca 12831178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 296
Target Start/End: Complemental strand, 40424043 - 40423917
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 268  Q
    |||||||||||||| || | | ||||||||||| ||||||| |||||| |||||||||||||| ||| || || ||||||||||  ||| |||||| |||    
T  40424043 gagtaatgatacatagatacccttaggtggcaatacaccct-ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacacttt 40423945  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||  |||||| |||||||||||||    
T  40423944 ctcttttctctcctcttctctcttccta 40423917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 192 - 301
Target Start/End: Complemental strand, 8841510 - 8841401
Alignment:
Q  192 ttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacattttctctttcatctccttttctctc 290  Q
    ||||||||||  ||||||| ||||||||||||||||||||||||| || || | ||||||||  ||| |||||| |||||||||| |||||| ||||||     
T  8841510 ttaggtggcagtacaccct-ttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactttctctttcctctcctcttctctt 8841412  T
Q  291 ttcctagtgca 301  Q
    |||||||||||    
T  8841411 ttcctagtgca 8841401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 14547922 - 14548053
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 268  Q
    |||||| ||||||| |||| | ||||||||||| ||||| | ||||||||||||||||||||| ||| || || | ||||||||  ||| |||||| |||    
T  14547922 gagtaaagatacatagacacccttaggtggcaatacaccat-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 14548020  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||  |||||| ||||||||||||| ||||    
T  14548021 ctcttttctctcctcttctctcttcctaatgca 14548053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 34012396 - 34012265
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| | |||||||| || ||||||| ||||||||||||||||||| | ||| || || | ||||| ||| ||| |||||| |||    
T  34012396 gagtaatgatacatagacacccttaggtggtaatacaccct-ttgacacccacacaaaaatttgacacgtagtcacgtggatcccgcacaagcacacttt 34012298  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||  |||||| ||||||||||||| ||||    
T  34012297 ctcttttctctcctcttctctcttcctaatgca 34012265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 296
Target Start/End: Original strand, 16383377 - 16383503
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| |||||||||  ||| | ||||||||||| |||||| |||||||||||||||||||||| ||||||||  || |||| ||| ||| || ||| |||    
T  16383377 gagttatgatacataaacacccttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacacttt 16383475  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||| ||| || |||||||||||||    
T  16383476 ctctttcttcttctcttctctcttccta 16383503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 170 - 294
Target Start/End: Original strand, 15197333 - 15197457
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| ||||   ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  15197333 gagtaatgatacatagacactcttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 15197431  T
Q  269 ctctttcatctccttttctctcttcc 294  Q
    ||||||  |||||| || ||||||||    
T  15197432 ctcttttctctcctcttttctcttcc 15197457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 504221 - 504090
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| | ||||||||||| ||| ||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| ||||||  ||    
T  504221 gagtaatgatacatagacacccttaggtggcaataca-ccttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacatt 504123  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||  |||| | ||||||||||||| ||||    
T  504122 ctcttttctctcatcttctctcttcctaatgca 504090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 297
Target Start/End: Complemental strand, 15258986 - 15258902
Alignment:
Q  214 gacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacattttctctttcatctccttttctctcttcctag 297  Q
    |||| ||||| |||||||| ||||||||| | ||||||||  ||| ||||||||||||||||| |||||| ||||||||||||||    
T  15258986 gacatccacataaaaatctgacatgtggtcacgtggaccctgcacaagcacattttctctttcctctcctcttctctcttcctag 15258902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 17443825 - 17443956
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| ||||||||| |||| | ||||||| ||| ||||  |||| |||| ||||||||||||| |||||| || ||||||| ||||||| |  ||| |||    
T  17443825 gagttatgatacatagacaaccttaggtgacaatacact-tcttaacactcacacaaaaatctgacatgtagtcatgtggaccccacacaaagacacttt 17443923  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||||||| || ||||||||||| ||||||    
T  17443924 ctctttcatcttctcttctctcttcccagtgca 17443956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 23122697 - 23122566
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 268  Q
    |||||||||||||| |||| | ||| ||||||| ||||| | ||||||||||||||||||||| ||| || || | ||||||||  ||  |||||| |||    
T  23122697 gagtaatgatacatagacacccttaagtggcaatacacctt-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcataagcacacttt 23122599  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||  |||||| ||||||||||||| ||||    
T  23122598 ctcttttctctcctgttctctcttcctaatgca 23122566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 296
Target Start/End: Original strand, 34307216 - 34307342
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| |||||||||  ||| | ||||||||||| |||||| |||||||||||||||||||||| ||||||||  || || | ||| ||| || ||| |||    
T  34307216 gagttatgatacataaacacccttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtggacatatgaaccccgcacaagtacacttt 34307314  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||| ||| || |||||||||||||    
T  34307315 ctctttcttcttctcttctctcttccta 34307342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 292
Target Start/End: Complemental strand, 4854963 - 4854841
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacatttt 268  Q
    |||||||||||||| |||||| ||||||||||| ||||||| || ||||| ||| |||||||| | ||||||  |  |||||||  ||| |||||| |||    
T  4854963 gagtaatgatacatagacatccttaggtggcaatacaccct-ttaacacctacataaaaatctgatatgtggccacatggaccctgcacaagcacacttt 4854865  T
Q  269 ctctttcatctccttttctctctt 292  Q
    ||||||  |||||| |||||||||    
T  4854864 ctcttttctctcctcttctctctt 4854841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 301
Target Start/End: Original strand, 9122229 - 9122316
Alignment:
Q  215 acacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctcttcctagtgca 301  Q
    |||||||||||||||||| |||||| || | ||||| ||| ||| |||||| |||||||||  |||||| ||||||||||||| ||||    
T  9122229 acacccacacaaaaatctgacatgtagtcacgtggatcccgcacaagcacactttctcttttctctcctcttctctcttcctaatgca 9122316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 296
Target Start/End: Complemental strand, 16056501 - 16056375
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| |||||||||  ||||| ||| ||| ||| ||| || |||||||||||||||||||||| ||||||||  || |||| ||| ||| || ||| |||    
T  16056501 gagttatgatacataaacatccttatgtgacaatacatcc-cttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacacttt 16056403  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||| ||| || |||||||||||||    
T  16056402 ctctttcttcttctcttctctcttccta 16056375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 296
Target Start/End: Complemental strand, 24307893 - 24307767
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| |||||||||  ||| | ||||||||||| ||| || |||||||||||||||||||||| | ||||||  || |||| ||| ||| || ||| |||    
T  24307893 gagttatgatacataaacacccttaggtggcaatacatcc-cttgacacccacacaaaaatctgatatgtggccatatggaccccgcacaagtacacttt 24307795  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||| ||| || |||||||||||||    
T  24307794 ctctttcttcttctcttctctcttccta 24307767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 296
Target Start/End: Complemental strand, 30479574 - 30479448
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggacc-cacacgagcacatttt 268  Q
    |||| |||||||||  ||| | ||||||||||| ||||||| |||||| ||||| |||||||| ||||||||  || |||||| | ||| || ||| |||    
T  30479574 gagttatgatacataaacacccttaggtggcaatacaccct-ttgacatccacataaaaatctgacatgtggctatatggacctcgcacaagtacacttt 30479476  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||| ||| || |||||||||||||    
T  30479475 ctctttcttcttctcttctctcttccta 30479448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 296
Target Start/End: Complemental strand, 10621182 - 10621061
Alignment:
Q  175 atgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctt 273  Q
    ||||||||| |||||| |||||||| || ||||||| ||||||||||||||||||||| ||| || |  |  | || ||| ||| |||||| ||||||||    
T  10621182 atgatacatagacatccttaggtggtaatacaccct-ttgacacccacacaaaaatctgacacgtagccacatcgatcccgcacaagcacactttctctt 10621084  T
Q  274 tcatctccttttctctcttccta 296  Q
    |  |||||| |||||||||||||    
T  10621083 ttctctcctcttctctcttccta 10621061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 294
Target Start/End: Original strand, 42221515 - 42221639
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacatttt 268  Q
    ||||||||||||||  ||||| ||||||| ||| |||  | || ||||||||||||||||||| ||| ||  | || ||||||| | || |||||| |||    
T  42221515 gagtaatgatacatatacatccttaggtgacaatacattc-ctggacacccacacaaaaatctgacacgtaatcatatggaccccatacaagcacacttt 42221613  T
Q  269 ctctttcatctccttttctctcttcc 294  Q
    |||||||||||| | |||||||||||    
T  42221614 ctctttcatctcatcttctctcttcc 42221639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 10284731 - 10284600
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 268  Q
    |||| ||||||||| |||| | ||| ||| ||| |||| || ||||||||||||||||||| | ||| || || | ||||||||  ||| |||||| |||    
T  10284731 gagttatgatacatagacacccttaagtgacaatacactct-ttgacacccacacaaaaatttgacacgtagtcacgtggaccccgcacaagcacacttt 10284633  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||| | || | ||||||||||||||||||    
T  10284632 ctctttcctttcatcttctctcttcctagtgca 10284600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 296
Target Start/End: Complemental strand, 15048281 - 15048155
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| ||||||||| |||||| ||||||||||| ||||||| |||||| |||||||||||||| ||| || |  |  |||| ||| ||| |||||| |||    
T  15048281 gagttatgatacatagacatccttaggtggcaatacaccct-ttgaca-ccacacaaaaatctgacacgtagccacatggaccccgcacaagcacacttt 15048184  T
Q  269 ctc-tttcatctccttttctctcttccta 296  Q
    ||| ||| ||||||| |||||||||||||    
T  15048183 ctctttttatctcctcttctctcttccta 15048155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 20075034 - 20074975
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaat 230  Q
    |||||||||||||| |||||| ||||||||||| |||| || |||||||||||| ||||||    
T  20075034 gagtaatgatacatagacatccttaggtggcaatacactct-ttgacacccacataaaaat 20074975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 301
Target Start/End: Complemental strand, 42354599 - 42354557
Alignment:
Q  259 agcacattttctctttcatctccttttctctcttcctagtgca 301  Q
    |||||| |||||||||||||| || ||||||||||||||||||    
T  42354599 agcacactttctctttcatcttctcttctctcttcctagtgca 42354557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 253
Target Start/End: Complemental strand, 14055693 - 14055610
Alignment:
Q  169 cgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc 253  Q
    ||||| ||||||||| |||| | ||||||| ||| |||| | ||||||| |||||||||||||| |||||| || | ||||||||    
T  14055693 cgagttatgatacattgacacccttaggtgacaatacactc-cttgacatccacacaaaaatcttacatgtagtcacgtggaccc 14055610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 44507187 - 44507056
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| | |||||||| || |||| || || |||||||||||||||||| ||| || || | ||||| |||  || |||| | |||    
T  44507187 gagtaatgatacatagacacccttaggtggtaatacactct-ttaacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcatacttt 44507089  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||  |||| | ||||||||||||| ||||    
T  44507088 ctcttttctctcatcttctctcttcctaatgca 44507056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 31953130 - 31952999
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggacc-cacacgagcacatttt 268  Q
    ||||||||||| || |||||| ||||||||||| |||||| ||||||||||||| |||||||| ||||||| | ||||||||| ||||| | |||| |||    
T  31953130 gagtaatgatagatagacatccttaggtggcaatacaccc-cttgacacccacataaaaatctgacatgtgttcatgtggacctcacacaaacacacttt 31953032  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||||||| || ||||||||||||||||||    
T  31953031 ctctttcatcttctcttctctcttcctagtgca 31952999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 32869678 - 32869809
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 268  Q
    |||||| ||||||| |||| | ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||||||  ||| |||||| |||    
T  32869678 gagtaaagatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 32869776  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||  |||||| ||||||||||||| ||||    
T  32869777 ctcttttctctcctcttctctcttcctaatgca 32869809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 12732523 - 12732610
Alignment:
Q  212 ttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctcttcctagt 298  Q
    ||||||||||||||||||||| ||| ||||  ||||||| ||||||  |||||||||||||||||||||||| ||||||||| |||||    
T  12732523 ttgacacccacacaaaaatctgacacgtggctatgtggatcccacataagcacattttctctttcatctcctcttctctctttctagt 12732610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 17598554 - 17598685
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 268  Q
    |||||||||||||| |||| | ||||||||||| ||| | | ||||||||||||||||||||| ||| || || | ||||||||  ||| |||||| |||    
T  17598554 gagtaatgatacatagacacccttaggtggcaatacatctt-ttgacacccacacaaaaatctgacacgttgtcacgtggaccccgcacaagcacacttt 17598652  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||  |||||| ||||||||||||| ||||    
T  17598653 ctcttttctctcctcttctctcttcctaatgca 17598685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 296
Target Start/End: Complemental strand, 22880755 - 22880632
Alignment:
Q  173 taatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacattttctc 271  Q
    ||||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||| ||| ||| || || | ||||||||  ||| |||||| ||||||    
T  22880755 taatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaattctgacacgtagtcacgtggaccccgcacaagcacactttctc 22880657  T
Q  272 tttcatctccttttctctcttccta 296  Q
    |||  |||||| |||||||||||||    
T  22880656 ttttctctcctcttctctcttccta 22880632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 296
Target Start/End: Complemental strand, 30341465 - 30341334
Alignment:
Q  165 acaacgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcac 263  Q
    |||| |||| |||||||||  ||| | ||||||||||| |||||| |||||||||||||||||||||| ||||||||  || |||| ||| ||| || ||    
T  30341465 acaaagagttatgatacataaacacccttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtac 30341367  T
Q  264 attttctctttcatctccttttctctcttccta 296  Q
    | |||||||||| ||| || |||||||||||||    
T  30341366 actttctctttcttcttctcttctctcttccta 30341334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 296
Target Start/End: Complemental strand, 15508124 - 15507998
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| |||||||||  ||| | ||||||||||| |||||| |||||||||||||||||||||| ||||||||  || |||| ||| ||| || ||| |||    
T  15508124 gagttatgatacataaacacccttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacacttt 15508026  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||| ||| || |||||||||||||    
T  15508025 ctctttcttcttctcttctctcttccta 15507998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 296
Target Start/End: Complemental strand, 15990142 - 15990016
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| |||||||||  ||| | ||||||||||| |||||| |||||||||||||||||||||| ||||||||  || |||| ||| ||| || ||| |||    
T  15990142 gagttatgatacataaacacccttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacacttt 15990044  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||| ||| || |||||||||||||    
T  15990043 ctctttcttcttctcttctctcttccta 15990016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 174 - 301
Target Start/End: Complemental strand, 28536582 - 28536457
Alignment:
Q  174 aatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctct 272  Q
    ||||||||||  ||||| ||||||||||| ||| || |||||||||||||||||||||| |||   ||| ||||||| ||||||| |||||| |||||||    
T  28536582 aatgatacataaacatccttaggtggcaatacaacc-cttgacacccacacaaaaatctgaca--cggtcatgtggaccccacacaagcacactttctct 28536486  T
Q  273 ttcatctccttttctctcttcctagtgca 301  Q
    || |||| || ||| ||||||||| ||||    
T  28536485 tttatcttctcttccctcttcctactgca 28536457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 11427616 - 11427749
Alignment:
Q  170 gagtaatgatacatggacatctt--taggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatt 266  Q
    |||||||||||||| |||| | |  |||||||||| ||| ||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |    
T  11427616 gagtaatgatacatagacaccctcttaggtggcaatacatcct-ttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacact 11427714  T
Q  267 ttctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||||  |||||| ||||||||||||| ||||    
T  11427715 ttctcttttctctcctcttctctcttcctaatgca 11427749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 296
Target Start/End: Original strand, 31976248 - 31976374
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 268  Q
    |||| ||||||||| |||||| ||||||||||| | ||||| || |||||||||||||||||| ||| ||||| |  || ||||  ||| |||||| |||    
T  31976248 gagttatgatacatagacatccttaggtggcaatataccct-ttaacacccacacaaaaatctgacacgtggtcacatgaaccccgcacaagcacacttt 31976346  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||  |||||| |||||||||||||    
T  31976347 ctcttttctctcctcttctctcttccta 31976374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 310
Target Start/End: Complemental strand, 6209565 - 6209425
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 268  Q
    |||||||||||||| |||| | ||||||||||| ||||  | ||||||| |||||||||||||  || || || | ||||||||  ||| |||||| |||    
T  6209565 gagtaatgatacatagacacccttaggtggcaatacactat-ttgacactcacacaaaaatctgtcacgtagtcacgtggaccccgcactagcacacttt 6209467  T
Q  269 ctctttcatctccttttctctcttcctagtgcaaaggatgta 310  Q
    ||||||  |||||| ||||||||||||| ||||  |||||||    
T  6209466 ctcttttctctcctcttctctcttcctaatgcatgggatgta 6209425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 29857827 - 29857958
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| |||||| |||||| ||| ||| || |||||||||||||||||| ||| || || | ||||| ||| ||  |||||| |||    
T  29857827 gagtaatgatacatagacacctttagatggcaataca-ccttttaacacccacacaaaaatctgacacgtagttacgtggatcccgcataagcacacttt 29857925  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||  ||| || ||||||||||||| ||||    
T  29857926 ctcttttctcttctcttctctcttcctaatgca 29857958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 298
Target Start/End: Original strand, 30870058 - 30870142
Alignment:
Q  215 acacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacattttctctttcatctccttttctctcttcctagt 298  Q
    ||||||| | |||||||||||||||||| |  |||||||  ||| ||||||||||||||||| |||||| ||||||||| |||||    
T  30870058 acacccatataaaaatctaacatgtggtcacatggaccccgcacaagcacattttctctttcctctcctcttctctctttctagt 30870142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 296
Target Start/End: Original strand, 4231564 - 4231674
Alignment:
Q  186 acatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttt 284  Q
    ||||| ||||||||||| |||||| |||| ||||||||||||||||| ||| ||||  || |||| ||| ||| || ||| |||||||||| ||| || |    
T  4231564 acatcattaggtggcaatacaccc-cttgccacccacacaaaaatctgacacgtggccatatggaccccgcacaagtacactttctctttcttcttctct 4231662  T
Q  285 tctctcttccta 296  Q
    ||||||||||||    
T  4231663 tctctcttccta 4231674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 301
Target Start/End: Complemental strand, 9379807 - 9379681
Alignment:
Q  175 atgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggacc-cacacgagcacattttctctt 273  Q
    ||||||||| |||||| |||| || ||| ||| || ||||||||||| |||||||| | ||| ||||  ||||||| | ||||| | |||||||||||||    
T  9379807 atgatacatagacatccttagatgacaatacatcc-cttgacacccatacaaaaatttgacacgtggccatgtggatctcacacaaacacattttctctt 9379709  T
Q  274 tcatctccttttctctcttcctagtgca 301  Q
    |||||| || || |||||||||| ||||    
T  9379708 tcatcttctcttttctcttcctaatgca 9379681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 310
Target Start/End: Complemental strand, 23128186 - 23128087
Alignment:
Q  212 ttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctcttcctagtgcaaaggatgta 310  Q
    ||||||||||||||||||||| ||| || || | ||||| ||||||| |||||| |||||||||  |||||| || |||||||||| ||||  |||||||    
T  23128186 ttgacacccacacaaaaatctgacacgtagtcacgtggatcccacacaagcacactttctcttttctctcctcttttctcttcctaatgcatgggatgta 23128087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 50052528 - 50052397
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 268  Q
    |||||||||||||| |||||| ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||||||  ||| |||||| |||    
T  50052528 gagtaatgatacatagacatccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 50052430  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||| |||||| ||||||||||||||||||    
T  50052429 ctctttcctctcctcttctctcttcctagtgca 50052397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 170 - 321
Target Start/End: Original strand, 3481654 - 3481805
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacatttt 268  Q
    |||||||||||||| |||| ||||||||||||| |||| || ||||||||||||||||||||| |||  | || | |||||||| |||| |||||| |||    
T  3481654 gagtaatgatacatagacacctttaggtggcaatacactct-ttgacacccacacaaaaatctgacacatagtcacgtggaccccacacaagcacacttt 3481752  T
Q  269 ctctttcatctccttttctctcttcctagtgcaaaggatgtatgagaataaag 321  Q
    ||||||| || | | ||||||||| |||||||| ||| |||||||||||||||    
T  3481753 ctctttcctcccatcttctctctttctagtgcatagggtgtatgagaataaag 3481805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 29239886 - 29240017
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacatttt 268  Q
    |||||||||||||| |||| | ||||||||||| ||||| | |||||| |||||||||||||||||| || || | |||||||| |||| |||||| |||    
T  29239886 gagtaatgatacatagacacccttaggtggcaatacaccat-ttgacatccacacaaaaatctaacacgtagtcacgtggaccccacacaagcacacttt 29239984  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||| |||||| ||||||||||||||||||    
T  29239985 ctctttcctctcctcttctctcttcctagtgca 29240017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 50526271 - 50526140
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||| ||| ||||| | |||||  || ||| |||||  |||    
T  50526271 gagtaatgatacatagacatctttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtggtcacgtggattccgcacaagcacgcttt 50526173  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    || |||| |||||| ||||||||||||||||||    
T  50526172 ctatttcctctcctcttctctcttcctagtgca 50526140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 6034044 - 6034175
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||||||| |||||| || | ||||| ||| ||| |||||| |||    
T  6034044 gagtaatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacatgtagtcacgtggatcccgcacaagcacacttt 6034142  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||  |||||| ||||||||||||| ||||    
T  6034143 ctcttttctctcctcttctctcttcctaatgca 6034175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 208 - 310
Target Start/End: Complemental strand, 48647789 - 48647686
Alignment:
Q  208 cctcttgacacccacacaaaaatctaacatgtggtaatgtggac-ccacacgagcacattttctctttcatctccttttctctcttcctagtgcaaagga 306  Q
    |||||| ||||||||| |||||||||||| ||||| | |||||| || ||| |||||| |||||||||| |||||| |||||||||||||||||| || |    
T  48647789 cctcttaacacccacataaaaatctaacacgtggtcacgtggactccgcacaagcacaatttctctttcctctcctcttctctcttcctagtgcatagaa 48647690  T
Q  307 tgta 310  Q
    ||||    
T  48647689 tgta 48647686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 301
Target Start/End: Original strand, 41236346 - 41236478
Alignment:
Q  169 cgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattt 267  Q
    ||||||||||||||| |||| | ||||||||||| ||| ||| |||||| |||||||||||||| ||| || || | ||||| ||| ||| |||||| ||    
T  41236346 cgagtaatgatacatagacacccttaggtggcaataca-ccttttgacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactt 41236444  T
Q  268 tctctttcatctccttttctctcttcctagtgca 301  Q
    |||||||  |||||| ||||||||||||| ||||    
T  41236445 tctcttttctctcctcttctctcttcctaatgca 41236478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 480547 - 480416
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggacccac-acgagcacatttt 268  Q
    |||||||||||||| |||| | ||||||| ||| ||||||| ||||||||||||||||||||| ||| || || | ||||||||   || |||||| |||    
T  480547 gagtaatgatacatagacacccttaggtgacaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacacttt 480449  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||  |||||| ||||||||||||| ||||    
T  480448 ctcttttctctcctcttctctcttcctaatgca 480416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 301
Target Start/End: Complemental strand, 28480329 - 28480237
Alignment:
Q  210 tcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacattttctctttcatctccttttctctcttcctagtgca 301  Q
    |||| |||| ||||||||||||| |||||| || |||||||||| |||| | |||| |||||| |||||||||| ||||||||||||||||||    
T  28480329 tcttaacactcacacaaaaatctgacatgtagtcatgtggaccccacacaaacacactttctccttcatctcctcttctctcttcctagtgca 28480237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 301
Target Start/End: Complemental strand, 28481204 - 28481112
Alignment:
Q  210 tcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacattttctctttcatctccttttctctcttcctagtgca 301  Q
    |||| |||| ||||||||||||| |||||| || |||||||||| |||| | |||| |||||| |||||||||| ||||||||||||||||||    
T  28481204 tcttaacactcacacaaaaatctgacatgtagtcatgtggaccccacacaaacacactttctccttcatctcctcttctctcttcctagtgca 28481112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 301
Target Start/End: Complemental strand, 28482079 - 28481987
Alignment:
Q  210 tcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacattttctctttcatctccttttctctcttcctagtgca 301  Q
    |||| |||| ||||||||||||| |||||| || |||||||||| |||| | |||| |||||| |||||||||| ||||||||||||||||||    
T  28482079 tcttaacactcacacaaaaatctgacatgtagtcatgtggaccccacacaaacacactttctccttcatctcctcttctctcttcctagtgca 28481987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 293
Target Start/End: Complemental strand, 48183149 - 48183026
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| | ||| ||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  48183149 gagtaatgatacatagacacccttacgtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 48183051  T
Q  269 ctctttcatctccttttctctcttc 293  Q
    ||||||  |||||| ||||||||||    
T  48183050 ctcttttctctcctcttctctcttc 48183026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 320
Target Start/End: Complemental strand, 29234345 - 29234195
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 268  Q
    |||||||||||||| |||| | |||| |||||| ||||||| |||| |||  ||||||||||| ||| || || | ||||||||  ||| |||||| |||    
T  29234345 gagtaatgatacatagacacccttagatggcaatacaccct-ttgataccttcacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 29234247  T
Q  269 ctctttcatctccttttctctcttcctagtgcaaaggatgtatgagaataaa 320  Q
    ||||||  |||||| ||||||||||||| ||||  || ||||||||||||||    
T  29234246 ctcttttctctcctcttctctcttcctaatgcatggggtgtatgagaataaa 29234195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 296
Target Start/End: Complemental strand, 54473633 - 54473507
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| | ||||||| ||| ||||| | ||||||||||||||||||||||||| || || | ||||| ||| ||| |||||| |||    
T  54473633 gagtaatgatacatagacacccttaggtgacaatacaccat-ttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacacttt 54473535  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
     |||||  |||||| |||||||||||||    
T  54473534 atcttttctctcctcttctctcttccta 54473507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 296
Target Start/End: Original strand, 55475191 - 55475317
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacatttt 268  Q
    |||| |||||||||  ||||| ||||||||||| ||||||| ||||||||||||||||||||| ||||||||  || |||||||  ||  || ||| |||    
T  55475191 gagttatgatacataaacatccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacatgtggccatatggaccctgcataagtacacttt 55475289  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||| ||| || |||||||||||||    
T  55475290 ctctttcttcttctcttctctcttccta 55475317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 296
Target Start/End: Complemental strand, 18769103 - 18769021
Alignment:
Q  215 acacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctcttccta 296  Q
    |||||||||||||||||| ||||||||| ||||  | ||||||| | |||||||||||||||||||| |||| ||||||||||    
T  18769103 acacccacacaaaaatctgacatgtggtcatgtaaatcccacacaaacacattttctctttcatctcattttttctcttccta 18769021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 310
Target Start/End: Complemental strand, 42044476 - 42044327
Alignment:
Q  161 tttaacaacgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacga 259  Q
    ||||| || |||||||||||||| |||| | ||||||||||| ||| |||  | |||||||||||||||||| ||| || || | ||||||||  ||| |    
T  42044476 tttaaaaaagagtaatgatacatagacacccttaggtggcaatacatccttgt-acacccacacaaaaatctgacacgtagtcacgtggaccccgcacaa 42044378  T
Q  260 gcacattttctctttcatctccttttctctcttcctagtgcaaaggatgta 310  Q
    ||||| |||||||||  |||||| ||||||||||||| ||||  |||||||    
T  42044377 gcacactttctcttttctctcctcttctctcttcctaatgcatgggatgta 42044327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 192 - 296
Target Start/End: Complemental strand, 17983821 - 17983717
Alignment:
Q  192 ttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctc 290  Q
    ||||||||||| |||||| |||||||||||||||||||||| ||||||||  || |||| ||| ||| || ||| |||||||||| ||| || |||||||    
T  17983821 ttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctctttcttcttctcttctctc 17983723  T
Q  291 ttccta 296  Q
    ||||||    
T  17983722 ttccta 17983717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 170 - 296
Target Start/End: Complemental strand, 55079814 - 55079687
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga--cccacacgagcacattt 267  Q
    |||| |||||||||  ||| | ||||||||||| ||||| |||||||||||| |||||||||| ||||||||  || ||||  ||||||| || ||| ||    
T  55079814 gagttatgatacataaacacccttaggtggcaatacacc-tcttgacacccatacaaaaatctgacatgtggccatatggacccccacacaagtacactt 55079716  T
Q  268 tctctttcatctccttttctctcttccta 296  Q
    |||||||| ||| || |||||||||||||    
T  55079715 tctctttcttcttctcttctctcttccta 55079687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 293
Target Start/End: Complemental strand, 11511562 - 11511439
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| | ||||||||||| ||||||| |||||||||||| |||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  11511562 gagtaatgatacatagacacccttaggtggcaatacaccct-ttgacacccacataaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 11511464  T
Q  269 ctctttcatctccttttctctcttc 293  Q
    ||||||  ||| || ||||||||||    
T  11511463 ctcttttctcttctcttctctcttc 11511439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 23608235 - 23608366
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggac-ccacacgagcacatttt 268  Q
    ||||||||||| || |||| | |||| || ||| ||||| | ||||||||||||||||||||| ||| || || | ||| || |||||| |||||| |||    
T  23608235 gagtaatgatatatagacacccttagatgacaatacaccat-ttgacacccacacaaaaatctgacacgtagtcacgtgaactccacacaagcacacttt 23608333  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    |||||| ||||||| ||||||||||||| ||||    
T  23608334 ctcttttatctcctcttctctcttcctaatgca 23608366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 293
Target Start/End: Complemental strand, 24995207 - 24995084
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 268  Q
    ||||||||||| ||||||| | |||| |||||| ||||||| |||||||||||| |||||| | ||| || || | ||||||||  ||| ||||||||||    
T  24995207 gagtaatgatatatggacacccttagatggcaatacaccct-ttgacacccacataaaaatttgacacgtagtcacgtggaccccgcacaagcacatttt 24995109  T
Q  269 ctctttcatctccttttctctcttc 293  Q
    ||||||  |||||| ||||||||||    
T  24995108 ctcttttctctcctcttctctcttc 24995084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 296
Target Start/End: Complemental strand, 19670816 - 19670690
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| |||||||||  ||| | ||||||||||| |||||| |||||||| ||||||||||||| ||||||||  || |||| ||| ||| || ||| |||    
T  19670816 gagttatgatacataaacacccttaggtggcaatacaccc-cttgacactcacacaaaaatctgacatgtggccatatggaccccgcacaagtacacttt 19670718  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||| ||| || |||||||||||||    
T  19670717 ctctttcttcttctcttctctcttccta 19670690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 296
Target Start/End: Complemental strand, 50813970 - 50813866
Alignment:
Q  192 ttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctc 290  Q
    |||||||| || |||||| |||||||||||||||||||||| ||||||||| || || | ||| ||| || ||| |||||||||| ||| || |||||||    
T  50813970 ttaggtggtaatacaccc-cttgacacccacacaaaaatctgacatgtggtcatatgaaccccgcacaagtacactttctctttcttcttctcttctctc 50813872  T
Q  291 ttccta 296  Q
    ||||||    
T  50813871 ttccta 50813866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 298
Target Start/End: Original strand, 18769153 - 18769237
Alignment:
Q  215 acacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacattttctctttcatctccttttctctcttcctagt 298  Q
    |||||||||||||||||| ||| ||||| ||||  |||| |||| |  |||||||||||||||||||||||| |||||| |||||    
T  18769153 acacccacacaaaaatctgacacgtggtcatgtaaaccccacacaaatacattttctctttcatctccttttttctctttctagt 18769237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 296
Target Start/End: Complemental strand, 44536845 - 44536720
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| |||||||||  |||  |||||||||||| |||||||  ||||| |||||||||||||| ||||||||| || | || ||||||  || ||| |||    
T  44536845 gagttatgatacataaacacttttaggtggcaatacaccct--tgacatccacacaaaaatctgacatgtggtcatatagaccccacataagtacacttt 44536748  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||| ||| || |||||||||||||    
T  44536747 ctctttcttcttctcttctctcttccta 44536720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 241
Target Start/End: Complemental strand, 29548059 - 29547989
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 241  Q
    |||| |||||||||  ||||| ||||||||||| ||| || |||||||||||||||||||||| ||||||||    
T  29548059 gagttatgatacataaacatccttaggtggcaatacatcc-cttgacacccacacaaaaatctgacatgtgg 29547989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 279
Target Start/End: Original strand, 29977908 - 29977994
Alignment:
Q  193 taggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacattttctctttcatct 279  Q
    |||||||||| |||||| ||| |||||||||||||||||| ||| || || || ||||||| |||| |||||| ||||||||||||||    
T  29977908 taggtggcaatacaccc-cttaacacccacacaaaaatctgacacgtagtcatatggaccccacacaagcacactttctctttcatct 29977994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 296
Target Start/End: Complemental strand, 29589800 - 29589714
Alignment:
Q  211 cttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctcttccta 296  Q
    |||||||||||||||||||||| | ||||||  || |||| ||||||| || ||| |||||||||| ||| || |||||||||||||    
T  29589800 cttgacacccacacaaaaatctgatatgtggccatatggaccccacacaagtacactttctctttcttcttctcttctctcttccta 29589714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 40574779 - 40574840
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatct 232  Q
    |||| ||||||||| |||||| |||||||| || ||||||| |||||||||||||||||||||    
T  40574779 gagttatgatacatagacatccttaggtggtaatacaccct-ttgacacccacacaaaaatct 40574840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 296
Target Start/End: Complemental strand, 18924573 - 18924469
Alignment:
Q  192 ttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggac-ccacacgagcacattttctctttcatctccttttctctc 290  Q
    ||||||||||| |||||| ||||| | |||||||||||||| |||||||| ||| || || || ||| || ||| |||||||||| ||| || |||||||    
T  18924573 ttaggtggcaatacaccc-cttgatatccacacaaaaatctgacatgtggcaatatgaactccgcacaagtacactttctctttcttcttctcttctctc 18924475  T
Q  291 ttccta 296  Q
    ||||||    
T  18924474 ttccta 18924469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 293
Target Start/End: Original strand, 47104544 - 47104667
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacatttt 268  Q
    ||||||||||| || |||||  |||| || ||| |||| |||| ||||||||||||||||| | ||| |||||  | | ||||| |||| | |||| |||    
T  47104544 gagtaatgatatatagacattcttagatgacaatacactctct-gacacccacacaaaaatttgacacgtggttttattgaccccacacaaacacacttt 47104642  T
Q  269 ctctttcatctccttttctctcttc 293  Q
    |||||||||||||| ||||||||||    
T  47104643 ctctttcatctcctcttctctcttc 47104667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 296
Target Start/End: Original strand, 47986208 - 47986334
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| |||||||||  ||| | ||||||||||| ||| || ||||||| |||||||||||||| ||||||||  || |||| ||| ||| || ||| |||    
T  47986208 gagttatgatacataaacacccttaggtggcaatacatcc-cttgacatccacacaaaaatctgacatgtggccatatggaccccgcacaagtacacttt 47986306  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||| | | || |||||||||||||    
T  47986307 ctctttcttattctcttctctcttccta 47986334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 31910192 - 31910253
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatct 232  Q
    |||| ||||||||| |||||| ||||||| ||| |||| || |||||||||||||||||||||    
T  31910192 gagttatgatacatagacatccttaggtgacaatacactct-ttgacacccacacaaaaatct 31910253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 32766980 - 32767028
Alignment:
Q  192 ttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 241  Q
    ||||||||||| |||||| ||||||||||| |||||||||| ||||||||    
T  32766980 ttaggtggcaatacaccc-cttgacacccatacaaaaatctgacatgtgg 32767028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 8343264 - 8343193
Alignment:
Q  169 cgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 241  Q
    ||||| |||||||||  ||||| ||||||||||| ||| ||| |||||||| ||| |||||||| ||||||||    
T  8343264 cgagttatgatacataaacatccttaggtggcaatacatcct-ttgacacctacataaaaatctgacatgtgg 8343193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 51898783 - 51898652
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  51898783 gagtaatgatacatagacatctttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacacttt 51898685  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    || |||| |||||| ||||||||||||||||||    
T  51898684 ctatttcctctcctcttctctcttcctagtgca 51898652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 47452420 - 47452289
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| | |||||||| || ||||||| ||||||||||||||||||||||||| || || | ||||| ||| ||| |||||| |||    
T  47452420 gagtaatgatacatagacacccttaggtggtaatacaccct-ttgacacccacacaaaaatctaacacgtagtcacgtggatcccgcacaagcacacttt 47452322  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||  |||||| ||||||||||||| ||||    
T  47452321 ctcttttctctcctcttctctcttcctattgca 47452289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 170 - 310
Target Start/End: Complemental strand, 9474976 - 9474836
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| | |||| |||    
T  9474976 gagtaatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaaacacacttt 9474878  T
Q  269 ctctttcatctccttttctctcttcctagtgcaaaggatgta 310  Q
    ||||||  |||||| ||||||||||||| ||||  |||||||    
T  9474877 ctcttttctctcctcttctctcttcctaatgcatgggatgta 9474836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 27564835 - 27564704
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||||| ||||||||||| ||| ||| ||||||||||||||||||||| ||| ||  | | ||||| ||| ||| |||||| |||    
T  27564835 gagtaatgatacatagacatccttaggtggcaataca-ccttttgacacccacacaaaaatctgacacgtaatcacgtggaccccgcacaagcacacttt 27564737  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||  |||||| ||||||||||||| ||||    
T  27564736 ctcttttctctcctcttctctcttcctaatgca 27564704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 37649198 - 37649329
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||||||||||||||||| |||| || ||||||||||||||||||||| ||| ||||| | ||| |  || ||| |||||| |||    
T  37649198 gagtaatgatacatagacatctttaggtggcaatacactct-ttgacacccacacaaaaatctgacacgtggtcacgtgaattccgcacaagcacacttt 37649296  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    | ||||  |||||| ||||||||||||| ||||    
T  37649297 cccttttctctcctcttctctcttcctaatgca 37649329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 296
Target Start/End: Original strand, 2581915 - 2582041
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  2581915 gagtaatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 2582013  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    || |||  |||||| |||||||||||||    
T  2582014 cttttttctctcctcttctctcttccta 2582041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 296
Target Start/End: Original strand, 32813247 - 32813373
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| ||||||||| |||||| ||||||||||| ||||||| || |||||||||||||||||| ||| ||||| |  |||| ||| ||| |||||| |||    
T  32813247 gagttatgatacatagacatccttaggtggcaatacaccct-ttaacacccacacaaaaatctgacacgtggtcacatggaccccgcacaagcacacttt 32813345  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||  |||||| |||||||||||||    
T  32813346 ctcttttctctcctcttctctcttccta 32813373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 301
Target Start/End: Original strand, 44453984 - 44454110
Alignment:
Q  175 atgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctt 273  Q
    ||||||||| |||| ||||| ||||||| ||| | |||||| |||||||||||||||| ||||||||| | ||||| ||||||| |||||| ||| ||||    
T  44453984 atgatacatagacacctttaagtggcaatacatc-tcttgatacccacacaaaaatctgacatgtggttacgtggatcccacacaagcacactttttctt 44454082  T
Q  274 tcatctccttttctctcttcctagtgca 301  Q
    || |||| | ||||||||||||| ||||    
T  44454083 tcctctcatcttctctcttcctaatgca 44454110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 301
Target Start/End: Complemental strand, 44548473 - 44548345
Alignment:
Q  173 taatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctc 271  Q
    ||||||||||| |||||||||||||||||| ||||| | |||| |||||||||||||||| ||| || || | ||||| ||| ||| |||||| ||||||    
T  44548473 taatgatacatagacatctttaggtggcaatacaccat-ttgatacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctc 44548375  T
Q  272 tttcatctccttttctctcttcctagtgca 301  Q
    |||  |||| | ||||||||||||| ||||    
T  44548374 ttttctctcttcttctctcttcctaatgca 44548345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 296
Target Start/End: Complemental strand, 5959100 - 5958974
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| |||||||||  ||| | ||| ||||||| ||||| ||||||||||||||||||||||| ||||||||| || |||| ||| ||| || ||| |||    
T  5959100 gagttatgatacataaacacccttaagtggcaatacacc-tcttgacacccacacaaaaatctgacatgtggtcatatggaccccgcacaagtacacttt 5959002  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||| ||| || |||||||||||||    
T  5959001 ctctttcttcttctcttctctcttccta 5958974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 296
Target Start/End: Original strand, 38595154 - 38595280
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    ||||||||||||||  ||| ||||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| |||  || |||||| |||    
T  38595154 gagtaatgatacataaacacctttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacacttt 38595252  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||  |||| | |||||||||||||    
T  38595253 ctcttttctctcatcttctctcttccta 38595280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 296
Target Start/End: Complemental strand, 50591100 - 50590974
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| |||||||||  ||| | ||||||||||| |||||| |||||||||||||||||||||| ||||||||  || |||| ||| ||| || ||| |||    
T  50591100 gagttatgatacataaacacccttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacacttt 50591002  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||| ||| || |||||||||||||    
T  50591001 ctctttcttcttctcttctctcttccta 50590974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 8346488 - 8346356
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacatttt 268  Q
    |||||||||||||| | || ||||||||||||| ||||| | ||||||||||||||||||||| ||| || || | ||||||||  ||| |||||| |||    
T  8346488 gagtaatgatacatagtcacctttaggtggcaatacaccat-ttgacacccacacaaaaatctgacacgtagtcacgtggaccctgcacaagcacacttt 8346390  T
Q  269 ctctttcatctcct-tttctctcttcctagtgca 301  Q
    ||||||  |||||| ||| |||||||||| ||||    
T  8346389 ctcttttctctcctctttttctcttcctaatgca 8346356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 296
Target Start/End: Original strand, 3000318 - 3000445
Alignment:
Q  169 cgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattt 267  Q
    |||||||||||||||  ||| | ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| |||  || |||||| ||    
T  3000318 cgagtaatgatacataaacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacactt 3000416  T
Q  268 tctctttcatctccttttctctcttccta 296  Q
    |||||||  |||| | |||||||||||||    
T  3000417 tctcttttctctcatcttctctcttccta 3000445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 296
Target Start/End: Complemental strand, 41608593 - 41608467
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| |||||||||  ||||| ||||||||||| |||||| |||||||| ||||||||||||| ||||||||  || |||| |||  || || ||| |||    
T  41608593 gagttatgatacataaacatccttaggtggcaatacaccc-cttgacactcacacaaaaatctgacatgtggccatatggaccccgtacaagtacacttt 41608495  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||| ||| || |||||||||||||    
T  41608494 ctctttcttcttctcttctctcttccta 41608467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 301
Target Start/End: Original strand, 13414802 - 13414892
Alignment:
Q  212 ttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||||||||||||||||||||| || || | ||||| ||||||| ||||||||||||||||  | || | ||||||||||||| ||||    
T  13414802 ttgacacccacacaaaaatctaacacgtagtcacgtggaccccacacaagcacattttctcttttctatcatcttctctcttcctaatgca 13414892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 298
Target Start/End: Original strand, 6260870 - 6260998
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| |||||| || || ||| |||||||| || |||||| ||  ||||||||| |||||||||||||||||| | ||||| ||| ||  ||||||||||    
T  6260870 gagttatgatagatagatatccttaggtggtaatacaccc-ctgaacacccacataaaaatctaacatgtggtcacgtggaccccgcataagcacatttt 6260968  T
Q  269 ctctttcatctccttttctctcttcctagt 298  Q
    || |||| |||||| ||||||||| |||||    
T  6260969 ctatttcttctcctcttctctctttctagt 6260998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 310
Target Start/End: Original strand, 50630458 - 50630598
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 268  Q
    |||||||||||||| || | | ||||||||||| ||| ||| |||  |||||||||||||||| ||| || || | ||||||||  ||| |||||| |||    
T  50630458 gagtaatgatacatagatacccttaggtggcaatacatcct-ttgttacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 50630556  T
Q  269 ctctttcatctccttttctctcttcctagtgcaaaggatgta 310  Q
    ||||||  |||||| ||||||||||||| |||| ||| ||||    
T  50630557 ctcttttctctcctcttctctcttcctaatgcatagggtgta 50630598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 38632421 - 38632290
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| | ||||||||||| ||| ||| || ||| |||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  38632421 gagtaatgatacatagacacccttaggtggcaataca-ccttttaacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 38632323  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
     |||||  |||||| ||||||||||||| ||||    
T  38632322 ttcttttctctcctcttctctcttcctaatgca 38632290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 48716382 - 48716251
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| | ||||||||||| ||||| | |||||| |||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  48716382 gagtaatgatacatagacacccttaggtggcaatacaccat-ttgacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 48716284  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
     |||||  | |||| ||||||||||||| ||||    
T  48716283 atcttttctttcctcttctctcttcctaatgca 48716251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 298
Target Start/End: Original strand, 48489343 - 48489428
Alignment:
Q  214 gacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctcttcctagt 298  Q
    |||| |||||||||||||| ||||||||| | ||||| ||| ||| |||||||||||| |||  || ||| |||||||||||||||    
T  48489343 gacatccacacaaaaatctgacatgtggtcacgtggatcccgcacaagcacattttctattttctcacctcttctctcttcctagt 48489428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 41758805 - 41758936
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 268  Q
    |||||||||||||| |||| | |||  |||||| ||||||| |||||| |||||||||||||| ||| || || |  |||||||  ||| | |||| |||    
T  41758805 gagtaatgatacatagacaccattaaatggcaatacaccct-ttgacaaccacacaaaaatctgacacgtagtcacatggaccccgcacaaacacacttt 41758903  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||  |||||| ||||||||||||| ||||    
T  41758904 ctcttttctctcctcttctctcttcctaatgca 41758936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 301
Target Start/End: Complemental strand, 11152476 - 11152347
Alignment:
Q  171 agtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacattttc 269  Q
    |||||||| |||| |||| ||| ||||||||| ||||||| | |||| |||||||||||||| ||| || || |||| |||||  ||| |||||  ||||    
T  11152476 agtaatgaaacatagacacctt-aggtggcaatacaccct-tcgacatccacacaaaaatctgacacgtagtcatgtagaccccgcacaagcacgctttc 11152379  T
Q  270 tctttcatctccttttctctcttcctagtgca 301  Q
    | |||| |||||| ||||||||||| ||||||    
T  11152378 tttttcctctcctcttctctcttcccagtgca 11152347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 241
Target Start/End: Complemental strand, 23597191 - 23597121
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 241  Q
    |||||||||||||| |||||| ||||||||||| |||| || |||| ||||||| |||||||| ||| ||||    
T  23597191 gagtaatgatacatagacatcattaggtggcaatacactct-ttgatacccacataaaaatctgacacgtgg 23597121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 43132 - 43263
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggac-ccacacgagcacatttt 268  Q
    |||||||||||||| ||||   ||||| | ||| ||| ||| ||||||||||||||||||||| ||| || || | |||||| || ||| |||||| |||    
T  43132 gagtaatgatacatagacagtcttaggagacaatacatcct-ttgacacccacacaaaaatctgacacgtagtcacgtggactccgcacaagcacacttt 43230  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||  ||||||  |||||||| ||| ||||    
T  43231 ctcttttctctcctcctctctctttctaatgca 43263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 170 - 299
Target Start/End: Original strand, 18207180 - 18207308
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| ||||||||| |||| | ||||||||||| ||||| |||||||||||| |||||||||||||| ||||  | ||| | ||||||| |||||| |||    
T  18207180 gagttatgatacatagacaaccttaggtggcaatacacc-tcttgacacccatacaaaaatctaacacgtgg-cacgtgaaccccacacaagcacacttt 18207277  T
Q  269 ctctttcatctccttttctctcttcctagtg 299  Q
    |||||||||||||| ||||||||||||||||    
T  18207278 ctctttcatctcctcttctctcttcctagtg 18207308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 212 - 301
Target Start/End: Original strand, 36208214 - 36208304
Alignment:
Q  212 ttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacattttctctttcatctccttttctctcttcctagtgca 301  Q
    |||||||||||||||||| || ||||||||| | ||||||||  ||| ||||||||||||||||| |||||| ||||||||||||||||||    
T  36208214 ttgacacccacacaaaaagctgacatgtggtcacgtggaccctgcacaagcacattttctctttcctctcctcttctctcttcctagtgca 36208304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 170 - 310
Target Start/End: Original strand, 35137533 - 35137673
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    ||||||||||| || |||| | ||||||||||| ||||||| ||||||||||||||||||||||||| || || | ||||| ||| ||| | |||| |||    
T  35137533 gagtaatgataaatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaaacacacttt 35137631  T
Q  269 ctctttcatctccttttctctcttcctagtgcaaaggatgta 310  Q
    ||||||  |||||| ||||||||||||| ||||  |||||||    
T  35137632 ctcttttctctcctcttctctcttcctaatgcatgggatgta 35137673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 19329842 - 19329973
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||||| ||||||||||| ||| ||| ||||||||||||||||||||| ||| ||  | | ||||| ||| ||| |||||| |||    
T  19329842 gagtaatgatacatagacatccttaggtggcaataca-ccttttgacacccacacaaaaatctgacacgtaatcacgtggaccccgcacaagcacacttt 19329940  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||  |||||| ||||||||||||| ||||    
T  19329941 ctcttttctctcctcttctctcttcctaatgca 19329973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 41423682 - 41423813
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| ||||||||| |||||| |||| ||| || ||||| |||||||||  |||||||||||| ||||||||| | || || |||  || |||| |||||    
T  41423682 gagttatgatacatagacatcattagatggtaatacacc-tcttgacacttacacaaaaatctgacatgtggtcacgtagatcccgtacaagcatatttt 41423780  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    |||||||||||||| ||||||||||||||||||    
T  41423781 ctctttcatctcctcttctctcttcctagtgca 41423813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 170 - 310
Target Start/End: Original strand, 38267040 - 38267180
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 268  Q
    |||||||||||||| |||| | ||| ||| ||| ||||||| ||||||||||||||||||||| ||| || || | ||||||||  ||| |||||| |||    
T  38267040 gagtaatgatacatagacacccttatgtgacaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 38267138  T
Q  269 ctctttcatctccttttctctcttcctagtgcaaaggatgta 310  Q
    ||||||  |||||| ||||||||||||| ||||  |||||||    
T  38267139 ctcttttctctcctcttctctcttcctaatgcatgggatgta 38267180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 8080483 - 8080352
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| | ||||||||||| ||||||| |||||||| ||| |||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  8080483 gagtaatgatacatagacacccttaggtggcaatacaccct-ttgacacctacataaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 8080385  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||  |||||| ||||||||||||| ||||    
T  8080384 ctcttttctctcctcttctctcttcctattgca 8080352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 296
Target Start/End: Original strand, 7389389 - 7389515
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| | ||||||||||| |||| || ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  7389389 gagtaatgatacatagacacccttaggtggcaatacactct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 7389487  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||  ||||||  ||||||||||||    
T  7389488 ctcttttctctcctactctctcttccta 7389515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 296
Target Start/End: Complemental strand, 40846213 - 40846087
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| |||||||||  ||||| ||||||||||| |||||| ||||||| ||||||||||||||||||||| || || |||| ||| ||| |  ||| |||    
T  40846213 gagttatgatacataaacatccttaggtggcaatacaccc-cttgacatccacacaaaaatctaacatgtagttatatggaccccgcacaaatacacttt 40846115  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||| ||| || |||||||||||||    
T  40846114 ctctttcttcttctcttctctcttccta 40846087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 170 - 274
Target Start/End: Original strand, 3434562 - 3434666
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||||| ||||||||||| ||||||| |||||||||||||||||| || ||| || || | ||||| ||| ||| |||||| |||    
T  3434562 gagtaatgatacatagacatccttaggtggcaatacaccct-ttgacacccacacaaaaaactgacacgtagtcacgtggatcccgcacaagcacacttt 3434660  T
Q  269 ctcttt 274  Q
    ||||||    
T  3434661 ctcttt 3434666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 173 - 301
Target Start/End: Original strand, 3783998 - 3784126
Alignment:
Q  173 taatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctc 271  Q
    ||||||||||| |||| | ||||||||||| ||| | | ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| ||||||    
T  3783998 taatgatacatagacacccttaggtggcaatacatctt-ttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctc 3784096  T
Q  272 tttcatctccttttctctcttcctagtgca 301  Q
    |||  |||||| ||||||||||||| ||||    
T  3784097 ttttctctcctcttctctcttcctaatgca 3784126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 170 - 298
Target Start/End: Complemental strand, 35468955 - 35468827
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 268  Q
    |||||||||||||| |||||| |||| |||||| ||| | | |||||||||||| |||||||||| |||||   ||||||||||  ||| | |||| |||    
T  35468955 gagtaatgatacatagacatccttagatggcaatacatcat-ttgacacccacataaaaatctaatatgtgaccatgtggaccctgcacaaacacacttt 35468857  T
Q  269 ctctttcatctccttttctctcttcctagt 298  Q
    ||||||| | |||| |||||||||||||||    
T  35468856 ctctttcctatcctcttctctcttcctagt 35468827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 170 - 274
Target Start/End: Complemental strand, 36362013 - 36361909
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| | ||||||||||| ||| ||| ||||||||||||||||||||| ||| || || | ||||| ||||||| |||||| |||    
T  36362013 gagtaatgatacatagacacccttaggtggcaatacatcct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacacttt 36361915  T
Q  269 ctcttt 274  Q
    ||||||    
T  36361914 ctcttt 36361909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 170 - 310
Target Start/End: Original strand, 38837217 - 38837357
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| | ||||||||||| ||||||| |  ||||| |||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  38837217 gagtaatgatacatagacacccttaggtggcaatacaccct-tgtacacctacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 38837315  T
Q  269 ctctttcatctccttttctctcttcctagtgcaaaggatgta 310  Q
    ||||||  |||||| ||||||||||||| ||||  |||||||    
T  38837316 ctcttttctctcctcttctctcttcctaatgcatgggatgta 38837357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 4999614 - 4999483
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 268  Q
    |||||||||||||| |||| | |||| |||||| ||||| | ||||||||||||||||||||| | | || || | ||||||||  ||| | |||| |||    
T  4999614 gagtaatgatacatagacacccttagatggcaatacacctt-ttgacacccacacaaaaatctgatacgtagtcacgtggaccccgcacaaacacacttt 4999516  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    |||||| ||||||| ||||||||||||| ||||    
T  4999515 ctcttttatctcctcttctctcttcctaatgca 4999483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 296
Target Start/End: Original strand, 8238236 - 8238339
Alignment:
Q  193 taggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctct 291  Q
    |||||||||| ||||||| ||||||||||||||||||||| |||||| || || |||| ||| ||| || ||| |||||||||| ||| || ||||||||    
T  8238236 taggtggcaatacaccct-ttgacacccacacaaaaatctgacatgtagtcatatggaccccgcacaagtacactttctctttcttcttctcttctctct 8238334  T
Q  292 tccta 296  Q
    |||||    
T  8238335 tccta 8238339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 291
Target Start/End: Complemental strand, 2318320 - 2318222
Alignment:
Q  193 taggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacattttctctttcatctccttttctctct 291  Q
    |||||||||| ||||| ||||||||||||||||||||||| || |||||| | |||||||| |||  |||| | ||||||||||||||| | ||||||||    
T  2318320 taggtggcaagacacc-tcttgacacccacacaaaaatctgacgtgtggtcacgtggacccgacataagcatactttctctttcatctcatcttctctct 2318222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 296
Target Start/End: Original strand, 22343361 - 22343487
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| |||||||||  ||| | ||||||||||| |||||| |||||||||||||||||||||| |||||||   || |||| ||| ||| || ||| |||    
T  22343361 gagttatgatacataaacacccttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtgaccatatggaccccgcacaagtacacttt 22343459  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||| ||| || |||||||||||||    
T  22343460 ctctttcttcttctcttctctcttccta 22343487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 310
Target Start/End: Complemental strand, 27744368 - 27744269
Alignment:
Q  212 ttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctcttcctagtgcaaaggatgta 310  Q
    |||| |||||||||||||||| ||||||||  | ||||| ||| ||  |||||||||||||| || |||||| ||||||||||||||||||  |||||||    
T  27744368 ttgatacccacacaaaaatctgacatgtggccacgtggatccctcataagcacattttctctatcctctcctcttctctcttcctagtgcatgggatgta 27744269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 296
Target Start/End: Complemental strand, 32564526 - 32564400
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| |||||||||  ||||  ||||||||||| |||||| |||||||||||||||||||||| ||||||||  || |||| ||| ||| |  ||| |||    
T  32564526 gagttatgatacataaacattcttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtggctatatggaccccgcacaaatacacttt 32564428  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||| ||| || |||||||||||||    
T  32564427 ctctttcttcttctcttctctcttccta 32564400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 296
Target Start/End: Original strand, 41915741 - 41915867
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| |||||||||  ||| | ||||||||||| |||||| ||||||||| |||||||||||| ||||||||  || |||| ||| ||| || ||| |||    
T  41915741 gagttatgatacataaacacccttaggtggcaatacaccc-cttgacacctacacaaaaatctgacatgtggccatatggaccccgcacaagtacacttt 41915839  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||| ||| || |||||||||||||    
T  41915840 ctctttcttcttctcttctctcttccta 41915867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 296
Target Start/End: Complemental strand, 16374884 - 16374798
Alignment:
Q  211 cttgacacccacacaaaaatctaacatgtggtaatgtggacc-cacacgagcacattttctctttcatctccttttctctcttccta 296  Q
    ||||||| |||||||||||||| ||| ||||| | ||||| | ||||| ||||||  |||||||||||||| |||||||||||||||    
T  16374884 cttgacatccacacaaaaatctgacacgtggtcacgtggatctcacacaagcacacattctctttcatctctttttctctcttccta 16374798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 159 - 241
Target Start/End: Complemental strand, 46374913 - 46374832
Alignment:
Q  159 actttaacaacgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 241  Q
    |||||||  |||||| ||||||||| |||||| ||||||||||| ||||||| || |||||||||||||||||| ||| ||||    
T  46374913 actttaatgacgagttatgatacatagacatccttaggtggcaacacaccct-ttaacacccacacaaaaatctgacacgtgg 46374832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 274
Target Start/End: Original strand, 36362026 - 36362130
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| | |||||||| || ||| ||| ||||||||||||||||||||| ||| || || | ||||| ||||||| |||||| |||    
T  36362026 gagtaatgatacatagacacccttaggtggtaatacatcct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacacttt 36362124  T
Q  269 ctcttt 274  Q
    ||||||    
T  36362125 ctcttt 36362130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 294
Target Start/End: Complemental strand, 39256023 - 39255900
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggac-ccacacgagcacatttt 268  Q
    |||| ||||||||| |||| | ||||||||||| |||||  ||||| ||||| |||||||||| ||| |||| |  |||||| |||||| || ||| |||    
T  39256023 gagttatgatacatagacaaccttaggtggcaatacacca-cttgatacccatacaaaaatctgacacgtggcac-gtggactccacacaagaacacttt 39255926  T
Q  269 ctctttcatctccttttctctcttcc 294  Q
    |||||||||||||| |||||||||||    
T  39255925 ctctttcatctcctcttctctcttcc 39255900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 19436287 - 19436156
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||||| ||||||| ||| ||| ||| ||||||||||||||||||||| ||| || || | ||||| ||| ||  |||||| |||    
T  19436287 gagtaatgatacatagacatccttaggtgacaataca-ccttttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcataagcacacttt 19436189  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||  ||| || || |||||||||| ||||    
T  19436188 ctcttttctcttctcttttctcttcctaatgca 19436156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 296
Target Start/End: Original strand, 35522881 - 35523002
Alignment:
Q  175 atgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctt 273  Q
    ||||||||| |||||| ||| ||||||| ||||| | || |||||||||||||||||| ||| ||||  || |||| ||| ||| |||||| ||||||||    
T  35522881 atgatacatagacatccttaagtggcaatacaccat-ttaacacccacacaaaaatctgacacgtggccatatggatcccgcacaagcacactttctctt 35522979  T
Q  274 tcatctccttttctctcttccta 296  Q
    |  |||| | |||||||||||||    
T  35522980 ttctctcttcttctctcttccta 35523002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 294
Target Start/End: Original strand, 3694411 - 3694491
Alignment:
Q  215 acacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctcttcc 294  Q
    |||||||||||||||||| ||| || || ||||||| ||| ||| |||||| |||||||||  |||||| |||||||||||    
T  3694411 acacccacacaaaaatctgacacgtagtcatgtggatcccgcacaagcacactttctcttttctctcctcttctctcttcc 3694491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 40957707 - 40957838
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| ||||   ||||||||||| |||| || |||| |||||||||||||||| ||| || || | ||||| |||  || |||||| |||    
T  40957707 gagtaatgatacatagacactcttaggtggcaatacactct-ttgatacccacacaaaaatctgacacgtagtcacgtggatcccgtacaagcacacttt 40957805  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||  |||| | ||||||||||||| ||||    
T  40957806 ctcttttctctcatcttctctcttcctaatgca 40957838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 10343672 - 10343602
Alignment:
Q  161 tttaacaacgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatct 232  Q
    |||| ||| |||||||||||||| |||| | |||||||| || ||||  |||||||||||||||||||||||    
T  10343672 tttaccaaagagtaatgatacatagacacccttaggtggaaatacaca-tcttgacacccacacaaaaatct 10343602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 296
Target Start/End: Original strand, 38044197 - 38044323
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| |||||||||  ||| | ||||||||||| |||||| ||||||| |||||||||||||| |||||| |  || |||| ||| ||| || ||| |||    
T  38044197 gagttatgatacataaacacccttaggtggcaatacaccc-cttgacatccacacaaaaatctgacatgtagccatatggaccccgcacaagtacacttt 38044295  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||| ||| || || ||||||||||    
T  38044296 ctctttcttcttctcttttctcttccta 38044323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 296
Target Start/End: Complemental strand, 32951545 - 32951467
Alignment:
Q  219 ccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacattttctctttcatctccttttctctcttccta 296  Q
    |||||||||||||||||| || || | ||||||||  ||| |||||| |||||||||  |||||| |||||||||||||    
T  32951545 ccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcctcttctctcttccta 32951467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 170 - 310
Target Start/End: Original strand, 2740274 - 2740414
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||||| ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  2740274 gagtaatgatacatagacatccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacacttt 2740372  T
Q  269 ctctttcatctccttttctctcttcctagtgcaaaggatgta 310  Q
    ||||||  |||||  ||||||||||||| ||||  |||||||    
T  2740373 ctcttttctctccccttctctcttcctaatgcatgggatgta 2740414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 173 - 301
Target Start/End: Complemental strand, 18520981 - 18520853
Alignment:
Q  173 taatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacattttctc 271  Q
    ||||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||||||  ||| |||||| ||||||    
T  18520981 taatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctc 18520883  T
Q  272 tttcatctccttttctctcttcctagtgca 301  Q
    ||| ||||||| ||||||||||||| ||||    
T  18520882 ttttatctcctcttctctcttcctaatgca 18520853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 170 - 296
Target Start/End: Original strand, 6679698 - 6679824
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| ||||||||| |||||||||||||||||| ||| ||| ||||||||||||||||||||| ||| ||||| |  |||| ||| ||| | ||||||||    
T  6679698 gagttatgatacatagacatctttaggtggcaataca-ccttttgacacccacacaaaaatctgacacgtggtcacatggaccccgcacaaacacatttt 6679796  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||  |||||| |||||||||||||    
T  6679797 ctcttttctctcctcttctctcttccta 6679824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 35943992 - 35943861
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| ||||||||| |||| | ||||||||||| ||| | | ||||||||||||||||||||| ||| || || | ||||| ||||||| |||||| |||    
T  35943992 gagttatgatacatagacacccttaggtggcaatacatcat-ttgacacccacacaaaaatctgacacgtagttacgtggatcccacacaagcacacttt 35943894  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||| |||||| || |||||||||||||||    
T  35943893 ctctttcctctcctcttttctcttcctagtgca 35943861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 296
Target Start/End: Complemental strand, 2252268 - 2252142
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| |||||||||  ||||| ||||||||||| |||||| |||||||||||||||||||||| ||||||||  || |||| ||| ||| || ||| |||    
T  2252268 gagttatgatacataaacatccttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacacttt 2252170  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||| ||| || |||||||||||||    
T  2252169 ctctttcttcttctcttctctcttccta 2252142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 296
Target Start/End: Complemental strand, 3921370 - 3921239
Alignment:
Q  165 acaacgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcac 263  Q
    |||| |||| |||||||||  ||| | ||||||||||| |||||| |||||||||||||||||||||| ||||||||  || |||| ||| ||| || ||    
T  3921370 acaaagagttatgatacataaacacccttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtac 3921272  T
Q  264 attttctctttcatctccttttctctcttccta 296  Q
    | |||||||||| ||| || |||||||||||||    
T  3921271 actttctctttcttcttctcttctctcttccta 3921239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 33149738 - 33149607
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| | |||||||| || ||||||| ||||||||||||||||||| | ||| || || | ||||| ||| ||| |||||| |||    
T  33149738 gagtaatgatacatagacacccttaggtggtaatacaccct-ttgacacccacacaaaaatttgacacgtagtcacgtggatcccgcacaagcacacttt 33149640  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||  |||||| ||||||||||||| ||||    
T  33149639 ctcttttctctcctcttctctcttcctaatgca 33149607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 33825424 - 33825293
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacatttt 268  Q
    |||||||||| ||| |||||  ||||||||||| |||| | ||||||||||||| |||||||| ||| ||| | ||||| |||  |||| |||||| |||    
T  33825424 gagtaatgatgcatagacattcttaggtggcaatacactc-cttgacacccacataaaaatctgacacgtgttcatgtgaaccttacacaagcacacttt 33825326  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    |||||| |||| || ||||||||||||||||||    
T  33825325 ctcttttatcttctcttctctcttcctagtgca 33825293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 36733042 - 36732911
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacatttt 268  Q
    |||||||||||||| |||| | |||||| |||| ||||||| ||||||||||||||||||||| |||  | || | ||||||||  ||| |||||| |||    
T  36733042 gagtaatgatacatagacacccttaggtagcaatacaccct-ttgacacccacacaaaaatctgacacatagtcacgtggaccccgcacaagcacacttt 36732944  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||  |||||| ||||||||||||| ||||    
T  36732943 ctcttttctctcctcttctctcttcctaatgca 36732911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 40145407 - 40145538
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| | ||||||||||| ||||||| || ||| |||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  40145407 gagtaatgatacatagacacccttaggtggcaatacaccct-ttaacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 40145505  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||  |||||| ||||||||||||| ||||    
T  40145506 ctcttttctctcctcttctctcttcctaatgca 40145538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 296
Target Start/End: Original strand, 28177775 - 28177901
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| ||||||||| |||||| ||||||||||| ||||||| ||||||||||||||||||||| ||| ||||| |  |||| ||| ||| | |||| |||    
T  28177775 gagttatgatacatagacatccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtggtcacatggaccccgcacaaacacacttt 28177873  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||  |||||| ||| |||||||||    
T  28177874 ctcttttctctcctcttccctcttccta 28177901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 296
Target Start/End: Complemental strand, 42414402 - 42414276
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| |  |||||||||| ||||||| ||||||||||||||||||||| ||| || || ||||||| ||| ||| |||||| |||    
T  42414402 gagtaatgatacatagacaccagtaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacacttt 42414304  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
     |||||  | |||| |||||||||||||    
T  42414303 atcttttctttcctcttctctcttccta 42414276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 14831814 - 14831945
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| ||||   ||||||||||| ||||||| |||||||||||| |||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  14831814 gagtaatgatacatagacactcttaggtggcaatacaccct-ttgacacccacataaaaatctgacacgtagtcacgtggatcccgcacaagcacacttt 14831912  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    || |||  |||||| ||||||||||||| ||||    
T  14831913 cttttttttctcctcttctctcttcctaatgca 14831945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 35785199 - 35785330
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| | ||||||||||| ||| ||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| | |||| |||    
T  35785199 gagtaatgatacatagacacccttaggtggcaataca-ccttttgacacccacacaaaaatctgacacgtagttacgtggatcccgcacaatcacacttt 35785297  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||  |||| | ||||||||||||| ||||    
T  35785298 ctcttttctctcatcttctctcttcctaatgca 35785330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 310
Target Start/End: Original strand, 2177445 - 2177504
Alignment:
Q  251 cccacacgagcacattttctctttcatctccttttctctcttcctagtgcaaaggatgta 310  Q
    ||||||| ||||||||||||||||| |||||| ||||||||||||||||||  |||||||    
T  2177445 cccacacaagcacattttctctttcctctcctcttctctcttcctagtgcattggatgta 2177504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 310
Target Start/End: Original strand, 13811652 - 13811792
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||| ||||||| |||| | ||||||||||| ||| | | ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  13811652 gagtaaagatacatagacacccttaggtggcaatacatcat-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 13811750  T
Q  269 ctctttcatctccttttctctcttcctagtgcaaaggatgta 310  Q
    |||||   |||||| ||||||||||||| ||||  |||||||    
T  13811751 ctcttctctctcctcttctctcttcctaatgcatgggatgta 13811792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 36875702 - 36875644
Alignment:
Q  171 agtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaat 230  Q
    ||||||||||||| |||| | ||||||||||| ||||||| |||||||||||||||||||    
T  36875702 agtaatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaat 36875644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 291
Target Start/End: Complemental strand, 6260101 - 6259980
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggacc-cacacgagcacatttt 268  Q
    ||||||||||||||  ||| |  |||||| ||| ||||||| || |||||||| |||||||||||||  |||| |  |||||| ||||  |||||| |||    
T  6260101 gagtaatgatacatacacaaccataggtgacaatacaccct-ttaacacccacgcaaaaatctaacacatggtcacatggacctcacagaagcacacttt 6260003  T
Q  269 ctctttcatctccttttctctct 291  Q
    |||||||||||||| ||||||||    
T  6260002 ctctttcatctcctcttctctct 6259980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 10356639 - 10356696
Alignment:
Q  175 atgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatct 232  Q
    ||||||||| |||||| ||||||||||| ||| ||  |||||||||||||||||||||    
T  10356639 atgatacatagacatccttaggtggcaatacatcccattgacacccacacaaaaatct 10356696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 298
Target Start/End: Original strand, 21370048 - 21370132
Alignment:
Q  215 acacccacacaaaaatctaacatgtggtaatgtggaccca-cacgagcacattttctctttcatctccttttctctcttcctagt 298  Q
    |||||||| ||||||||| ||||||||| | ||||||||  ||| | ||||||||||||||| |||| | |||| ||||||||||    
T  21370048 acacccactcaaaaatctgacatgtggtcacgtggaccccgcacaaacacattttctctttcctctcatcttctttcttcctagt 21370132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 282
Target Start/End: Original strand, 25831334 - 25831397
Alignment:
Q  220 cacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctcct 282  Q
    |||| |||||||||||| ||||| ||||||| ||||||| | ||||||||||||||||| ||||    
T  25831334 cacaaaaaaatctaacacgtggtcatgtggaccccacacaaacacattttctctttcatatcct 25831397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 296
Target Start/End: Original strand, 26720516 - 26720642
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| ||||||||| |||||| ||||||||||| ||||||| || ||||| ||| |||||||| ||| ||||  |  |||| ||| ||| |||||| |||    
T  26720516 gagttatgatacatagacatccttaggtggcaatacaccct-ttaacacctacaaaaaaatctgacacgtggccacatggatcccgcacaagcacacttt 26720614  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||  ||| || |||||||||||||    
T  26720615 ctcttttctcttctcttctctcttccta 26720642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 296
Target Start/End: Original strand, 26990265 - 26990391
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||| ||||||||| |||||| ||||||||||| ||||||| || ||||| ||| |||||||| ||| ||||  |  |||| ||| ||| |||||| |||    
T  26990265 gagttatgatacatagacatccttaggtggcaatacaccct-ttaacacctacaaaaaaatctgacacgtggccacatggatcccgcacaagcacacttt 26990363  T
Q  269 ctctttcatctccttttctctcttccta 296  Q
    ||||||  ||| || |||||||||||||    
T  26990364 ctcttttctcttctcttctctcttccta 26990391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 301
Target Start/End: Original strand, 31009032 - 31009119
Alignment:
Q  215 acacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctcttcctagtgca 301  Q
    |||||||||||||||||| ||| || || | ||||| ||| ||| |||||| ||||| |||| ||| || ||||||||||||||||||    
T  31009032 acacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctatttcctcttctcttctctcttcctagtgca 31009119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 1029 - 898
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||||||||||||||||| ||||||| || ||| ||||||||||| || ||| || || | ||| | ||| ||| |||||| |||    
T  1029 gagtaatgatacatagacatctttaggtggcaatacaccct-ttaacatccacacaaaaaactgacacgtagtcacgtgaatcccgcacaagcacacttt 931  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||| |||||| ||||||||||||||||||    
T  930 ctctttcctctcctcttctctcttcctagtgca 898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 1029 - 898
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||||||||||||||||| ||||||| || ||| ||||||||||| || ||| || || | ||| | ||| ||| |||||| |||    
T  1029 gagtaatgatacatagacatctttaggtggcaatacaccct-ttaacatccacacaaaaaactgacacgtagtcacgtgaatcccgcacaagcacacttt 931  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||| |||||| ||||||||||||||||||    
T  930 ctctttcctctcctcttctctcttcctagtgca 898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 310
Target Start/End: Complemental strand, 10209 - 10069
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggacc-cacacgagcacatttt 268  Q
    |||| ||||||||| |||| ||||||||||||| ||| ||| |||||| ||||| |||||||| ||| || || | ||||||| |  || |||||| |||    
T  10209 gagttatgatacatagacacctttaggtggcaatacatcct-ttgacatccacataaaaatctgacacgtagtcacgtggaccgcgtacaagcacacttt 10111  T
Q  269 ctctttcatctccttttctctcttcctagtgcaaaggatgta 310  Q
    ||||||  |||||| ||||||||||||| |||| ||| ||||    
T  10110 ctcttttctctcctcttctctcttcctaatgcatagggtgta 10069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 301
Target Start/End: Original strand, 4029 - 4160
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 268  Q
    |||||||||||||| |||| |||||| |||||| ||| ||| || |||||||||||||||||| ||| || || | ||||| ||| ||  |||||| |||    
T  4029 gagtaatgatacatagacacctttagatggcaataca-ccttttaacacccacacaaaaatctgacacgtagttacgtggatcccgcataagcacacttt 4127  T
Q  269 ctctttcatctccttttctctcttcctagtgca 301  Q
    ||||||  ||| || ||||||||||||| ||||    
T  4128 ctcttttctcttctcttctctcttcctaatgca 4160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 292
Target Start/End: Original strand, 152523 - 152620
Alignment:
Q  195 ggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctccttttctctctt 292  Q
    |||||||| |||||| |||||||||||||||||||||| ||||||||| || |||| ||| ||| |  ||| |||||||||| ||| || |||||||||    
T  152523 ggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtggtcatatggatcccgcacaaatacactttctctttcttcttctcttctctctt 152620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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