View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10396_high_16 (Length: 288)
Name: NF10396_high_16
Description: NF10396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10396_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 41080848 - 41081119
Alignment:
| Q |
1 |
tgagaataaagactgtctatgtaacatttttcttaacaaaatcgtgtgttca-tggttaaataaatcctaatattctaaacatgttaatcttctatagta |
99 |
Q |
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|||||||||||| ||| | ||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
41080848 |
tgagaataaagagtgtttgtgtaacattttccttaacaaaatcgtgtgttcaatggttaaataaatcataatattctaaacatgttaatcttctatagta |
41080947 |
T |
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| Q |
100 |
attattaaacgagtgtgcatattgcagcaaaataacatgcatggaggaatttccactaaaacctggtgaactagtgctggtattttcctacttcaatatt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41080948 |
attattaaacgagtgtgcatattgcagcaaaataacatgcatggaggaatttccactaaaacctggtgaactagtgctggtattttcctacttcaatatt |
41081047 |
T |
|
| Q |
200 |
tttctttcttaaataggttcagatttattgtttggaaaattaaggtagagcaagaaaacggccaattgagat |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41081048 |
tttctttcttaaataggttcagatttattgtttggaaaattaaggtagagcaagaaaacggccaattgagat |
41081119 |
T |
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