View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10396_high_17 (Length: 281)
Name: NF10396_high_17
Description: NF10396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10396_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 31330415 - 31330206
Alignment:
| Q |
1 |
gaattgaatcctagattgaatagtttgcataggaacaagctttatcgatactatagctacataactaaataaagaacacgctatcatatgacacatggta |
100 |
Q |
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| T |
31330415 |
gaattgaaccctggatcgaatagtttgcataggaacaatcttcatccatgctatagcaacatagctaaacaaagaacacgctgtcatatgacacatggtg |
31330316 |
T |
|
| Q |
101 |
agaaaaatagggtacttgaaaccataagtgctgagcaagtacttgttcaatagaagaacaccaatgttggaagagtaccatgctgctacaagacctattg |
200 |
Q |
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||||||||||| |||||||||||||| |||| | ||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
31330315 |
agaaaaataggatacttgaaaccatagttgcttaacaaatacttgttcaatagaagaacaccaatgttggatgaataccatgctgctacaagacctattg |
31330216 |
T |
|
| Q |
201 |
tgaagaaacg |
210 |
Q |
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|||||||||| |
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| T |
31330215 |
tgaagaaacg |
31330206 |
T |
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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 1809575 - 1809528
Alignment:
| Q |
216 |
accccttcactttggaacccttttgatcttcagaaacgtgtaatgatt |
263 |
Q |
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| T |
1809575 |
accccttcactttggaacccttttgatcttcagaaacgtgtaatgatt |
1809528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 182
Target Start/End: Original strand, 5780000 - 5780099
Alignment:
| Q |
83 |
atcatatgacacatggtaagaaaaatagggtacttgaaaccataagtgctgagcaagtacttgttcaatagaagaacaccaatgttggaagagtaccatg |
182 |
Q |
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||||| ||||||||||| || |||| ||| ||||| ||||||| |||| | |||||||||||||| |||||||||||||||||| |||| |||||||| |
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| T |
5780000 |
atcatgtgacacatggtgaggaaaaccgggaacttgtaaccatagctgcttaacaagtacttgttcattagaagaacaccaatgtttgaagtgtaccatg |
5780099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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