View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10396_high_18 (Length: 278)
Name: NF10396_high_18
Description: NF10396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10396_high_18 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 176; Significance: 7e-95; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 31492585 - 31492840
Alignment:
| Q |
17 |
atccacatgttaatccaagaccacaaaaacctaagaggagtcgttttgaaagattgggattaaaagtagggttgattggagttgcatgtgcaataaccag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31492585 |
atccacatgttaatccaagaccacaaaaacctaagaggagtcgttttgaaagattgggattaaaagtagggttgattggagttgcatgtgcaataaccag |
31492684 |
T |
|
| Q |
117 |
tggggtgactggagttgaacatatgatttatgatgcttttgttgg---nnnnnnnnnnnnnnnnnnggatggttttgaaacttaattgtttttacttttg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31492685 |
tggggtgactggagttgaacatatgatttatgatgcttttgttggtgatgatgatgatgatgatgaggatggttttgaaacttaattgtttttacttttg |
31492784 |
T |
|
| Q |
214 |
gaatatatattatatacctgctagcagatagactagacactctaacatgttcttct |
269 |
Q |
| |
|
|||||||||| |||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31492785 |
gaatatatatcatatacctactagcagatagaatagacactctaacatgttcttct |
31492840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 31497974 - 31498229
Alignment:
| Q |
17 |
atccacatgttaatccaagaccacaaaaacctaagaggagtcgttttgaaagattgggattaaaagtagggttgattggagttgcatgtgcaataaccag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31497974 |
atccacatgttaatccaagaccacaaaaacctaagaggagtcgttttgaaagattgggattaaaagtagggttgattggagttgcatgtgcaataaccag |
31498073 |
T |
|
| Q |
117 |
tggggtgactggagttgaacatatgatttatgatgcttttgttgg---nnnnnnnnnnnnnnnnnnggatggttttgaaacttaattgtttttacttttg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31498074 |
tggggtgactggagttgaacatatgatttatgatgcttttgttggtgatgatgatgatgatgatgaggatggttttgaaacttaattgtttttacttttg |
31498173 |
T |
|
| Q |
214 |
gaatatatattatatacctgctagcagatagactagacactctaacatgttcttct |
269 |
Q |
| |
|
|||||||||| |||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31498174 |
gaatatatatcatatacctactagcagatagaatagacactctaacatgttcttct |
31498229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 31503361 - 31503616
Alignment:
| Q |
17 |
atccacatgttaatccaagaccacaaaaacctaagaggagtcgttttgaaagattgggattaaaagtagggttgattggagttgcatgtgcaataaccag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31503361 |
atccacatgttaatccaagaccacaaaaacctaagaggagtcgttttgaaagattgggattaaaagtagggttgattggagttgcatgtgcaataaccag |
31503460 |
T |
|
| Q |
117 |
tggggtgactggagttgaacatatgatttatgatgcttttgttgg---nnnnnnnnnnnnnnnnnnggatggttttgaaacttaattgtttttacttttg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31503461 |
tggggtgactggagttgaacatatgatttatgatgcttttgttggtgatgatgatgatgatgatgaggatggttttgaaacttaattgtttttacttttg |
31503560 |
T |
|
| Q |
214 |
gaatatatattatatacctgctagcagatagactagacactctaacatgttcttct |
269 |
Q |
| |
|
|||||||||| |||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31503561 |
gaatatatatcatatacctactagcagatagaatagacactctaacatgttcttct |
31503616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University