View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10396_high_6 (Length: 440)
Name: NF10396_high_6
Description: NF10396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10396_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 145 - 429
Target Start/End: Original strand, 13951835 - 13952119
Alignment:
| Q |
145 |
aggagaataagtgggatgtttgatgttcgaattcaatcttctaaatatattatgcaatctcccttactaaccgaaccgagctaaggannnnnnnagcttg |
244 |
Q |
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| T |
13951835 |
aggagaataagtgaaatgtttgatgttcgaatcaagtcttctaaatatattatgcaatctcccttactaaccgaaccgagctaaggatttttt-agcttg |
13951933 |
T |
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| Q |
245 |
ttttctaatcaatgtaaaaacgtttttaaatcaatttcataactgttttaaaaagtcctcagtttacaacatgcctggttttataacacgcgcaatcgat |
344 |
Q |
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| T |
13951934 |
ttttcttatcaatgtaaaaacgattttaaatcaatttcataactgttttaaaaagtcctcagtttacaacatgcctgattttataacacgcgcaatcgat |
13952033 |
T |
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| Q |
345 |
ttaaaaactccaaaatgta-cttagaactaaatattttgtagttagggtacatttttggcatcttattattatggttgtgattcat |
429 |
Q |
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| T |
13952034 |
ttaaaaactccaaaatgtaccttagaagtaaatattttgtagttagggtacatttttggcatcttattattatggttgtgattcat |
13952119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 145 - 429
Target Start/End: Original strand, 14093042 - 14093326
Alignment:
| Q |
145 |
aggagaataagtgggatgtttgatgttcgaattcaatcttctaaatatattatgcaatctcccttactaaccgaaccgagctaaggannnnnnnagcttg |
244 |
Q |
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| T |
14093042 |
aggagaataagtgaaatgtttgatgttcgaatcaagtcttctaaatatattatgcaatctcccttactaaccgaaccgagctaaggatttttt-agcttg |
14093140 |
T |
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| Q |
245 |
ttttctaatcaatgtaaaaacgtttttaaatcaatttcataactgttttaaaaagtcctcagtttacaacatgcctggttttataacacgcgcaatcgat |
344 |
Q |
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| T |
14093141 |
ttttcttatcaatgtaaaaacgattttaaatcaatttcataactgttttaaaaagtcctcagtttacaacatgcctgattttataacacgcgcaatcgat |
14093240 |
T |
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| Q |
345 |
ttaaaaactccaaaatgta-cttagaactaaatattttgtagttagggtacatttttggcatcttattattatggttgtgattcat |
429 |
Q |
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| T |
14093241 |
ttaaaaactccaaaatgtaccttagaagtaaatattttgtagttagggtacatttttggcatcttattattatggttgtgattcat |
14093326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 13951701 - 13951735
Alignment:
| Q |
17 |
aactttattataggtattgaattaccaaggaataa |
51 |
Q |
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| T |
13951701 |
aactttattataggtattgaattaccaacgaataa |
13951735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 14092908 - 14092942
Alignment:
| Q |
17 |
aactttattataggtattgaattaccaaggaataa |
51 |
Q |
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| T |
14092908 |
aactttattataggtattgaattaccaacgaataa |
14092942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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