View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10396_high_8 (Length: 377)
Name: NF10396_high_8
Description: NF10396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10396_high_8 |
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| [»] scaffold0084 (1 HSPs) |
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| [»] scaffold0046 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 43895024 - 43895380
Alignment:
| Q |
1 |
ccagcaccaaaatcatccatcggaattatcagattaaacattctccaaggttccaacaacaacctcaattgaattcaatcagtttcaattttgctgattc |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43895024 |
ccagcaccaaaatcatccatcggaattatcggattaaacattctccaaggttccaacaacaacctcaattgaattcaatcagtttcaattttgctgattc |
43895123 |
T |
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| Q |
101 |
nnnnnnnnnnnnnntagtttcaattttttcaagaagcggtgagtcaagatttgaattgaaaggtttggactttgaacatgttgatgagttttaagaggga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43895124 |
aaaaaaaaaaaaaatagtttcaattttttcaagaagcggtgagtcaagatttgaattgaaaggtttggactttgaacatgttgatgagttttaagaggga |
43895223 |
T |
|
| Q |
201 |
ttgtgatggtggtggtatgcatgattcaagatcagtaagattagtgtggtggtttgtgtggctatgagacccataataaaattgaaaatcatgttctgga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43895224 |
ttgtgatggtggtggtatgcatgattcaagatcagtaagattagtgtggtggt---tgtggctatgagacccataataaaattgaaaatcttgttctgga |
43895320 |
T |
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| Q |
301 |
tttttctttttcaatccgttcctgtgtttttgttaattaattatgagatagagggggata |
360 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43895321 |
tttttctttttcaatccgttcctgtgtttttgttgattaattatgagatagagggggata |
43895380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0084 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0084
Description:
Target: scaffold0084; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 12400 - 12063
Alignment:
| Q |
1 |
ccagcaccaaaatcatccatcggaattatcagattaaacattctccaaggttccaacaacaacctcaattgaattcaatcagtttcaattttgctgattc |
100 |
Q |
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||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12400 |
ccagcaccaaaatcacccatcggaattatcggattaaacattctccaa--------caacaacctcaattgaattcaatcagtttcaattttgctgattc |
12309 |
T |
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| Q |
101 |
nnnnnnnnnnnnnntagtttcaatttttt-caagaagcggtgagtcaagatttgaattgaaaggtttggactttgaacatgttgatgagttttaagaggg |
199 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12308 |
aaaaaacaaaatc--agtttcaatttttttcaagaagtggtgagtcaagatttgaattgaaaggtttggactttgaacatgttgatgagttttaagaggg |
12211 |
T |
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| Q |
200 |
attgtgatggtggtggtatgcatgattcaagatcagtaagattagtgtggtggtttgtgtggctatgagacccataataaaattgaaaatcatgttctgg |
299 |
Q |
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|||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
12210 |
attgtggtggtggtggtatgcatgattca---------agattaatgtggtggtttgtgtggctatgagacccataatgaaattgaaaatcatgttctgg |
12120 |
T |
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| Q |
300 |
atttttctttttcaatccgttcctgtgtttttgttaattaattatgagatagagggg |
356 |
Q |
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| T |
12119 |
gtttttctttttcaatccgttcttgagtttttgttaattaattatgagatagagggg |
12063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 116 - 360
Target Start/End: Original strand, 24342 - 24578
Alignment:
| Q |
116 |
agtttcaatttttt-caagaagcggtgagtcaagatttgaattgaaaggtttggactttgaacatgttgatgagttttaagagggattgtgatggtggtg |
214 |
Q |
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|||||||||||||| ||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24342 |
agtttcaatttttttcaagaagtgatgagtcaagatttgaattgaaaggtttgaactttgaacatgttgatgagttttaagagggattgtggtggtggtg |
24441 |
T |
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| Q |
215 |
gtatgcatgattcaagatcagtaagattagtgtggtggtttgtgtggctatgagacccataataaaattgaaaatcatgttctggatttttctttttcaa |
314 |
Q |
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|||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
24442 |
gtatgcatgagtcaaga---------ttagtgtggtggtttgtgtggctatgagacccataatgaaattgaaaatcatgttctggaattttctttttcaa |
24532 |
T |
|
| Q |
315 |
tccgttcctgtgtttttgttaattaattatgagatagagggggata |
360 |
Q |
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||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
24533 |
tccgttcttgagtttttgttaattaattatgagatagagggggata |
24578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 24282 - 24318
Alignment:
| Q |
1 |
ccagcaccaaaatcatccatcggaattatcagattaa |
37 |
Q |
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||||||||||||||| |||||||||||||| |||||| |
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| T |
24282 |
ccagcaccaaaatcacccatcggaattatcggattaa |
24318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 124 - 336
Target Start/End: Complemental strand, 17345900 - 17345689
Alignment:
| Q |
124 |
ttttttcaagaagcggtgagtcaagatttgaattgaaaggtttggactttgaacatgttgatgagttttaagagggattgtgatggtggtggtatgcatg |
223 |
Q |
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||||||||||||| ||||||| |||||||||||| ||||||||||||| || ||||||||||| ||| |||||||||||||| ||||| |||||||| || |
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| T |
17345900 |
ttttttcaagaagtggtgagtgaagatttgaattcaaaggtttggactatggacatgttgatgtgttgtaagagggattgtggtggtgatggtatgcgtg |
17345801 |
T |
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| Q |
224 |
attcaagatcagtaagattagtgtggtggtttgtgtggctatgagacccataataaaattgaaa-------atcatgttctgg-atttttctttttcaat |
315 |
Q |
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| || ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||| |
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| T |
17345800 |
agtc---------aagattagtgtggtggtttgtgtggctatgagacccataatgaaattgaaattaaatcatcatgttctggtttttttctttttcaat |
17345710 |
T |
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| Q |
316 |
ccgttcctgtgtttttgttaa |
336 |
Q |
| |
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| | || || ||||||||||| |
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| T |
17345709 |
cagctcttgagtttttgttaa |
17345689 |
T |
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