View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10396_low_12 (Length: 372)
Name: NF10396_low_12
Description: NF10396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10396_low_12 |
 | |
|
| [»] scaffold0143 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 45 - 361
Target Start/End: Complemental strand, 13838443 - 13838127
Alignment:
| Q |
45 |
cctcgacagttaactgccaaaattcagtttcacccatctccatcggcacttaagtaccgaggagttgtaaacgccacacccttctttcttcattgtcctc |
144 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
13838443 |
cctcggcagttaactgccgaaattcagtttcacccatctccatcggcacttaagtaccgaggagttgtaaacgccacacccttctttcttcattgtcttc |
13838344 |
T |
|
| Q |
145 |
ttcacaaatatctcaatctctagtttcttctctatgctttttctttttgcaatcttaattattccttctcaattataacatagtataaagctattaattt |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13838343 |
ttcacaaatatctcaatctctagtttcttctctatgctttttctttttgcaatcttaattattccttctcaattataacatagtataaagctattaattt |
13838244 |
T |
|
| Q |
245 |
cataggctatgatgaatcatagagatagtcatacaccactttgatttcttgtgctgataactttcttatacccattatttttcagagccttttattcctt |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13838243 |
cataggctatgatgaatcatagagatagtcatgcaccactttgatttcctgtgctgataactttcttatacccattatttttcagagccttttattcctt |
13838144 |
T |
|
| Q |
345 |
caattatcatagttctt |
361 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
13838143 |
caattatcatagttctt |
13838127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 45 - 361
Target Start/End: Complemental strand, 1294096 - 1293780
Alignment:
| Q |
45 |
cctcgacagttaactgccaaaattcagtttcacccatctccatcggcacttaagtaccgaggagttgtaaacgccacacccttctttcttcattgtcctc |
144 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1294096 |
cctcggcagttaactgccgaaattcagtttcacccatctccatcggcacttaagtaccgaggagttgtaaacgccacacccttctttcttcattgtcttc |
1293997 |
T |
|
| Q |
145 |
ttcacaaatatctcaatctctagtttcttctctatgctttttctttttgcaatcttaattattccttctcaattataacatagtataaagctattaattt |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1293996 |
ttcacaaatatctcaatctctagtttcttctctatgctttttctttttgcaatcttaattattccttctcaattataacatagtataaagctattaattt |
1293897 |
T |
|
| Q |
245 |
cataggctatgatgaatcatagagatagtcatacaccactttgatttcttgtgctgataactttcttatacccattatttttcagagccttttattcctt |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1293896 |
cataggctatgatgaatcatagagatagtcatgcaccactttgatttcctgtgctgataactttcttatacccattatttttcagagtcttttattcctt |
1293797 |
T |
|
| Q |
345 |
caattatcatagttctt |
361 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
1293796 |
caattatcatagttctt |
1293780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 50604439 - 50604403
Alignment:
| Q |
45 |
cctcgacagttaactgccaaaattcagtttcacccat |
81 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
50604439 |
cctcggcagttaactgccgaaattcagtttcacccat |
50604403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 46 - 361
Target Start/End: Complemental strand, 43313401 - 43313086
Alignment:
| Q |
46 |
ctcgacagttaactgccaaaattcagtttcacccatctccatcggcacttaagtaccgaggagttgtaaacgccacacccttctttcttcattgtcctct |
145 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
43313401 |
ctcggcagttaactgccgaaattcagtttcacccatctccatcggcacttaagtaccgaggagttgtaaacgccacacccttctttcttcattgtcttct |
43313302 |
T |
|
| Q |
146 |
tcacaaatatctcaatctctagtttcttctctatgctttttctttttgcaatcttaattattccttctcaattataacatagtataaagctattaatttc |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43313301 |
tcacaaatatctcaatctctagtttcttctctatgctttttctttttgcaatcttaattattcattctcaattataacatagtataaagctattaatttc |
43313202 |
T |
|
| Q |
246 |
ataggctatgatgaatcatagagatagtcatacaccactttgatttcttgtgctgataactttcttatacccattatttttcagagccttttattccttc |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43313201 |
ataggctatgatgaatcatagagatagtcatgcaccactttaatttcctgtgctgataactttcttatacccattatttttcagagtcttttattccttc |
43313102 |
T |
|
| Q |
346 |
aattatcatagttctt |
361 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
43313101 |
aattatcatagttctt |
43313086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 52 - 361
Target Start/End: Complemental strand, 26544001 - 26543684
Alignment:
| Q |
52 |
agttaactgccaaaattcagtttcacccatctccatcggcacttaagtaccgaggagttgtaaacgccacacccttctttcttcattgtcctcttcacaa |
151 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26544001 |
agttaactgccgaaattcagtttcacccatctccattggcacttaagtaccgaggagttgtaaacgccacacccttctttcttcattgtcttcttcacaa |
26543902 |
T |
|
| Q |
152 |
atatctcaatctctagtttcttctctatgctttttctttttgcaatcttaattattccttctcaattataa--------catagtataaagctattaatt |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26543901 |
atatctcaatctctagtttcttctctatgctttttctttttgcaatcttaattattcattctcaattataacataataacatagtataaagctattaatt |
26543802 |
T |
|
| Q |
244 |
tcataggctatgatgaatcatagagatagtcatacaccactttgatttcttgtgctgataactttcttatacccattatttttcagagccttttattcct |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26543801 |
tcataggctatgatgaatcatagagatagtcatgcaccactttgatttcctgtgctgataactttcttatacccattatttttcagagccttttattcct |
26543702 |
T |
|
| Q |
344 |
tcaattatcatagttctt |
361 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
26543701 |
tcaattatcatagttctt |
26543684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 4286148 - 4286185
Alignment:
| Q |
45 |
cctcgacagttaactgccaaaattcagtttcacccatc |
82 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4286148 |
cctcgacagttaactgccgaaattcagtttcacccatc |
4286185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 51 - 361
Target Start/End: Original strand, 7974973 - 7975283
Alignment:
| Q |
51 |
cagttaactgccaaaattcagtttcacccatctccatcggcacttaagtaccgaggagttgtaaacgccacacccttctttcttcattgtcctcttcaca |
150 |
Q |
| |
|
|||||||||| | ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7974973 |
cagttaactgtcgaaatttagtttcacccatctccatcgacacttaagtaccgaggagttgtaaacgccacacccttctttcttcattgtcttcttcaca |
7975072 |
T |
|
| Q |
151 |
aatatctcaatctctagtttcttctctatgctttttctttttgcaatcttaattattccttctcaattataacatagtataaagctattaatttcatagg |
250 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7975073 |
aatatctcactctctagtttcttctctatgctttttctttttgcgatcttaattattccttcttaattataacatagtataaagctattaatttcatagg |
7975172 |
T |
|
| Q |
251 |
ctatgatgaatcatagagatagtcatacaccactttgatttcttgtgctgataactttcttatacccattatttttcagagccttttattccttcaatta |
350 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7975173 |
ctatgatgaatcatagagatagtcatgcaccactttgatttcctgtgctgataactttcttatacccattatttttcagagccttttattccttcaatta |
7975272 |
T |
|
| Q |
351 |
tcatagttctt |
361 |
Q |
| |
|
| ||||||||| |
|
|
| T |
7975273 |
tgatagttctt |
7975283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 48589774 - 48589817
Alignment:
| Q |
19 |
aaacacgagtaaattttctaaatacccctcgacagttaactgcc |
62 |
Q |
| |
|
||||||||||||||| |||||||||| ||| ||||||||||||| |
|
|
| T |
48589774 |
aaacacgagtaaattatctaaatacctctcaacagttaactgcc |
48589817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 19072406 - 19072455
Alignment:
| Q |
19 |
aaacacgagtaaattttctaaatacccctcgacagttaactgccaaaatt |
68 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
19072406 |
aaacacgagtaaattactcaaatgcccctcgacagttaactgccaaaatt |
19072455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 30846899 - 30846850
Alignment:
| Q |
19 |
aaacacgagtaaattttctaaatacccctcgacagttaactgccaaaatt |
68 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
30846899 |
aaacacgagtaaattactcaaatacccctcgacagttaactgccgaaatt |
30846850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 114 - 361
Target Start/End: Complemental strand, 9901249 - 9901001
Alignment:
| Q |
114 |
aacgccacacccttctttcttcattgtcctcttcacaaatatctcaatctct-agtttcttctctatgctttttctttttgcaatcttaatta-ttcctt |
211 |
Q |
| |
|
||||||||||||||||| ||||||| || || |||||||| |||| ||||| ||||| |||||||| ||| | ||| |||||| ||| || || |
|
|
| T |
9901249 |
aacgccacacccttcttccttcattttcttcatcacaaatctctctatctcacagttttttctctatattttcattctttataatcttttttactttttt |
9901150 |
T |
|
| Q |
212 |
ctcaattataacatagtataaagctattaatttcataggctatgatgaatcatagagatagtcatacaccactttgatttcttgtgctgataactttctt |
311 |
Q |
| |
|
|||||||||||||| ||| ||| |||||| || ||||||||||||| ||||||||||||| ||||||| ||||||| ||||||||||| ||||| |
|
|
| T |
9901149 |
ctcaattataacatgttatgc-gcttttaattatattggctatgatgaattttagagatagtcatgcaccactctgatttcctgtgctgataattttctc |
9901051 |
T |
|
| Q |
312 |
atacccattatttttcagagccttttattccttcaattatcatagttctt |
361 |
Q |
| |
|
|||||||||||||||| ||||||| | ||||| ||||||| ||| |||| |
|
|
| T |
9901050 |
atacccattatttttctgagccttattttcctgtaattatcgtagatctt |
9901001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 29356776 - 29356731
Alignment:
| Q |
19 |
aaacacgagtaaattttctaaatacccctcgacagttaactgccaa |
64 |
Q |
| |
|
|||||| |||||||| || |||||||||||| |||||||||||||| |
|
|
| T |
29356776 |
aaacacaagtaaattatccaaatacccctcggcagttaactgccaa |
29356731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 249 - 333
Target Start/End: Original strand, 8264044 - 8264129
Alignment:
| Q |
249 |
ggctatgatgaatcatagagatagtcatacaccactttgat-ttcttgtgctgataactttcttatacccattatttttcagagcc |
333 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||| ||| |||||||||| ||||| |||||||||||||||| ||||| |
|
|
| T |
8264044 |
ggctatgatgaatcatagagatagtcatgcaccactctgatattccagtgctgataattttctcatacccattatttttctgagcc |
8264129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 249 - 333
Target Start/End: Original strand, 8277462 - 8277547
Alignment:
| Q |
249 |
ggctatgatgaatcatagagatagtcatacaccactttgat-ttcttgtgctgataactttcttatacccattatttttcagagcc |
333 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||| ||| |||||||||| ||||| |||||||||||||||| ||||| |
|
|
| T |
8277462 |
ggctatgatgaatcatagagatagtcatgcaccactctgatattccagtgctgataattttctcatacccattatttttctgagcc |
8277547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 43176732 - 43176683
Alignment:
| Q |
19 |
aaacacgagtaaattttctaaatacccctcgacagttaactgccaaaatt |
68 |
Q |
| |
|
|||||||||||| || |||||||||| |||||||||||||||| ||||| |
|
|
| T |
43176732 |
aaacacgagtaatttacctaaatacccttcgacagttaactgccgaaatt |
43176683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 29514119 - 29514163
Alignment:
| Q |
19 |
aaacacgagtaaattttctaaata-cccctcgacagttaactgcc |
62 |
Q |
| |
|
|||||||||||| || |||||||| |||||||||||||||||||| |
|
|
| T |
29514119 |
aaacacgagtaatttatctaaatatcccctcgacagttaactgcc |
29514163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 249 - 333
Target Start/End: Original strand, 33032851 - 33032936
Alignment:
| Q |
249 |
ggctatgatgaatcatagagatagtcatacaccactttgat-ttcttgtgctgataactttcttatacccattatttttcagagcc |
333 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||| |||| || |||||||||| ||||| |||||||||||||||| ||||| |
|
|
| T |
33032851 |
ggctatgatgagtcatagagatagtcatgcaccactctgatgtttccgtgctgataattttctcatacccattatttttctgagcc |
33032936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 31516865 - 31516833
Alignment:
| Q |
80 |
atctccatcggcacttaagtaccgaggagttgt |
112 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
|
|
| T |
31516865 |
atctccctcggcacttaagtaccgaggagttgt |
31516833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 38331066 - 38331029
Alignment:
| Q |
45 |
cctcgacagttaactgccaaaattcagtttcacccatc |
82 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
38331066 |
cctcggcagttaactgccgaaattcagtttcacccatc |
38331029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 33483490 - 33483458
Alignment:
| Q |
80 |
atctccatcggcacttaagtaccgaggagttgt |
112 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
|
|
| T |
33483490 |
atctccttcggcacttaagtaccgaggagttgt |
33483458 |
T |
|
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Target: scaffold0143 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0143
Description:
Target: scaffold0143; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 3186 - 3218
Alignment:
| Q |
80 |
atctccatcggcacttaagtaccgaggagttgt |
112 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
|
|
| T |
3186 |
atctccttcggcacttaagtaccgaggagttgt |
3218 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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