View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10396_low_13 (Length: 370)
Name: NF10396_low_13
Description: NF10396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10396_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 5e-84; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 64 - 229
Target Start/End: Complemental strand, 54928503 - 54928339
Alignment:
| Q |
64 |
tgtgacgattattttcaaacaaaatgcatcacaaattaattttcaacaatggtgcaataaacctactaaaattgtcgaaatccttctagtcaatgatgta |
163 |
Q |
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| T |
54928503 |
tgtgacgattattttcaaacaaaatgcatcacaaattaattttcaacaatggtgcaataaacctactaaaattgtcgaaatcctt-tagtcaatgatgta |
54928405 |
T |
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| Q |
164 |
tcaagttcaattccaaaattatgatctactattgtaactggcatgtgagcctatcaagatattact |
229 |
Q |
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| T |
54928404 |
tcaagttcaattccaaaattatgatctactattgtaactggcatgtgagcctatcaagatattact |
54928339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 80 - 229
Target Start/End: Complemental strand, 50465368 - 50465216
Alignment:
| Q |
80 |
aaacaaaatgcatcacaaattaattttcaacaatggtgcaataaacctactaaaattgtcg---aaatccttctagtcaatgatgtatcaagttcaattc |
176 |
Q |
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| T |
50465368 |
aaacaaaatgcatcacaaattagttttcaacaatagtgcaataaacccactaaaatattggttaaaatccttctagtcaatgatgtatcaagttcaattc |
50465269 |
T |
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| Q |
177 |
caaaattatgatctactattgtaactggcatgtgagcctatcaagatattact |
229 |
Q |
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| T |
50465268 |
cataagtatgatctactattttaactggcatgtgagcctatctagatattact |
50465216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 293 - 359
Target Start/End: Complemental strand, 54928275 - 54928209
Alignment:
| Q |
293 |
tctaaacattctagaggcattatgtctaattctcaaattcaatggtctgtcaatacttacaattcat |
359 |
Q |
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| T |
54928275 |
tctaaacattctagaggcattatgtctaattctcaaattcaatggtctgtcaatacttaaaattcat |
54928209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 293 - 359
Target Start/End: Complemental strand, 50465152 - 50465086
Alignment:
| Q |
293 |
tctaaacattctagaggcattatgtctaattctcaaattcaatggtctgtcaatacttacaattcat |
359 |
Q |
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| T |
50465152 |
tctagacattctagaggcattatgtctaattctcaaattcaatggtatgtcattacttacaattcat |
50465086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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