View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10396_low_2 (Length: 707)
Name: NF10396_low_2
Description: NF10396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10396_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 11 - 435
Target Start/End: Complemental strand, 2486824 - 2486401
Alignment:
| Q |
11 |
gagagatgaacaggggaagttttgaattagcttcaaggaatcagtagaaacataaaagcttatcaatccctgattataaactaccaaattcagactaacc |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2486824 |
gagatatgaacaggggaagttttgaattagcttcaaggaatcagtagaaacataaaagcttatcaatccctcattataaactaccaaattcagactaacc |
2486725 |
T |
|
| Q |
111 |
ggctggtcccgagagcagaatagtccggcttgcaggagcaagattccgtgtatatttagaaacctctgcatgctttaaatggacataagcagcacttgta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2486724 |
ggctggtcccgagagcagaatagtccggcttgcaggagcaagattccgtgtatatttagaaacctctgcatgctttaaatggacataagcagcacttgta |
2486625 |
T |
|
| Q |
211 |
agcaacacgcgtgtctgctcactgtcatgataaatacaatgagaaagatcttatcagaaccaatattgaatcgtgttaataaaatcaattagagattaaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2486624 |
agcaacacgcgtgtctgctcactgtcatgataaatacaatgagaaagatcttatcagaaccaatattgaatcgtgttaataaaatcaattagagatcaaa |
2486525 |
T |
|
| Q |
311 |
cattatgatttgctagttgtcattattatttgctagatcaaaatacagacactgtaggcgacaccatatgtgtttatttatctccatctttttcttacat |
410 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2486524 |
cattatgatttgctagtcgtcattattatttgctagatcaaaatacagacacggtaggcgacacca-atgtgtttatttatctccatctttttcttacat |
2486426 |
T |
|
| Q |
411 |
tttatctttacaagtctacacattt |
435 |
Q |
| |
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|||||| |||||||||||||||||| |
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| T |
2486425 |
tttatccttacaagtctacacattt |
2486401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 496 - 690
Target Start/End: Complemental strand, 2486340 - 2486146
Alignment:
| Q |
496 |
tatatggtttcctttatacgaataataatatgaatacaaatgtatgtcatacagcaaccatgtaattaagaaaacagtcaatgagaatgagatctttatt |
595 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2486340 |
tatatggtttgctttatacgaataataatatgaatacaaatgtatgtcatacagcaaccatgtaattaagaaaacagtcaatgagaatgagatctttatt |
2486241 |
T |
|
| Q |
596 |
aatatggttattactacaaatgaaccggaaactaaacaaattcgcatgcatgtatcatggaaaataggaaaataaaaggagaatgaatcgataat |
690 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2486240 |
aatatggttattactacaaatgtaccggaaactaaacaaattcgcatgcatgtatgatggaaaataggaaaataaaaggagaatgaatcgataat |
2486146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 104 - 235
Target Start/End: Original strand, 41594824 - 41594955
Alignment:
| Q |
104 |
actaaccggctggtcccgagagcagaatagtccggcttgcaggagcaagattccgtgtatatttagaaacctctgcatgctttaaatggacataagcagc |
203 |
Q |
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||||||| || || || ||||| |||||||| | ||| |||||||||||||| || |||||||||||||| || |||||||||||||| ||||| ||||| |
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| T |
41594824 |
actaaccagcagggccagagagaagaatagttctgctagcaggagcaagattacgcgtatatttagaaacttcagcatgctttaaatgaacatatgcagc |
41594923 |
T |
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| Q |
204 |
acttgtaagcaacacgcgtgtctgctcactgt |
235 |
Q |
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|||||||||||| || || ||||||||||||| |
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| T |
41594924 |
acttgtaagcaaaacccgcgtctgctcactgt |
41594955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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