View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10396_low_22 (Length: 277)

Name: NF10396_low_22
Description: NF10396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10396_low_22
NF10396_low_22
[»] chr5 (27 HSPs)
chr5 (41-272)||(1079652-1079883)
chr5 (1-72)||(28306020-28306091)
chr5 (1-74)||(14051201-14051274)
chr5 (2-83)||(26791121-26791202)
chr5 (1-73)||(18258680-18258752)
chr5 (1-76)||(5168295-5168370)
chr5 (1-72)||(7287077-7287148)
chr5 (1-72)||(15479581-15479652)
chr5 (1-72)||(33037632-33037703)
chr5 (1-73)||(1671654-1671726)
chr5 (1-73)||(36739060-36739132)
chr5 (1-73)||(8687003-8687075)
chr5 (1-72)||(41321367-41321438)
chr5 (1-71)||(1764336-1764406)
chr5 (1-73)||(17626098-17626170)
chr5 (10-73)||(35634722-35634785)
chr5 (1-75)||(3565196-3565270)
chr5 (3-73)||(7552854-7552924)
chr5 (3-64)||(7076464-7076525)
chr5 (2-71)||(13168635-13168704)
chr5 (10-78)||(1274479-1274546)
chr5 (5-73)||(22972233-22972301)
chr5 (1-73)||(28467340-28467412)
chr5 (1-72)||(14923185-14923256)
chr5 (2-73)||(39591793-39591864)
chr5 (2-73)||(39592185-39592256)
chr5 (1-69)||(2972436-2972504)
[»] chr4 (40 HSPs)
chr4 (1-74)||(26724858-26724931)
chr4 (1-73)||(26732337-26732409)
chr4 (1-73)||(51986154-51986226)
chr4 (2-73)||(27050973-27051044)
chr4 (1-72)||(46213082-46213153)
chr4 (1-72)||(53801647-53801718)
chr4 (1-73)||(23369219-23369291)
chr4 (1-73)||(44539846-44539918)
chr4 (1-72)||(15175658-15175729)
chr4 (2-73)||(29175338-29175409)
chr4 (1-76)||(36178018-36178093)
chr4 (3-69)||(10250406-10250472)
chr4 (2-72)||(38376378-38376448)
chr4 (1-73)||(37997366-37997438)
chr4 (1-72)||(43175096-43175167)
chr4 (15-77)||(27965111-27965173)
chr4 (7-73)||(37297166-37297232)
chr4 (1-69)||(11068800-11068868)
chr4 (1-69)||(24575742-24575810)
chr4 (5-73)||(31641452-31641520)
chr4 (1-73)||(38382433-38382505)
chr4 (1-73)||(39478549-39478621)
chr4 (1-73)||(47181953-47182025)
chr4 (1-73)||(48402084-48402156)
chr4 (2-73)||(2575677-2575748)
chr4 (1-72)||(39440596-39440667)
chr4 (3-73)||(26492121-26492191)
chr4 (1-74)||(5622570-5622643)
chr4 (2-74)||(50721630-50721702)
chr4 (1-73)||(56363932-56364004)
chr4 (2-73)||(34616674-34616745)
chr4 (1-64)||(38134465-38134528)
chr4 (3-66)||(45083086-45083149)
chr4 (9-72)||(5233558-5233621)
chr4 (33-72)||(53786103-53786142)
chr4 (2-72)||(7632349-7632419)
chr4 (15-72)||(26907970-26908027)
chr4 (41-73)||(2268406-2268438)
chr4 (1-73)||(42853689-42853761)
chr4 (36-72)||(46634235-46634271)
[»] chr6 (19 HSPs)
chr6 (1-74)||(32316814-32316887)
chr6 (1-72)||(552905-552976)
chr6 (6-73)||(34047504-34047571)
chr6 (1-73)||(26595461-26595533)
chr6 (3-73)||(15974722-15974792)
chr6 (1-67)||(18737460-18737526)
chr6 (2-78)||(1156833-1156909)
chr6 (1-73)||(33430249-33430321)
chr6 (1-73)||(16199562-16199634)
chr6 (1-72)||(31077906-31077977)
chr6 (1-72)||(13689882-13689953)
chr6 (1-72)||(14818044-14818115)
chr6 (1-71)||(11612300-11612370)
chr6 (1-78)||(4820479-4820556)
chr6 (3-72)||(22079451-22079520)
chr6 (37-72)||(5080467-5080502)
chr6 (1-72)||(5694039-5694110)
chr6 (2-73)||(24900887-24900958)
chr6 (1-76)||(30423436-30423511)
[»] chr3 (46 HSPs)
chr3 (1-73)||(46624019-46624091)
chr3 (1-74)||(41309229-41309302)
chr3 (1-78)||(52939763-52939840)
chr3 (1-73)||(27541389-27541461)
chr3 (1-72)||(16969454-16969525)
chr3 (1-72)||(32924169-32924240)
chr3 (1-72)||(36670902-36670973)
chr3 (1-72)||(13735842-13735913)
chr3 (1-72)||(42356972-42357043)
chr3 (1-74)||(52254024-52254097)
chr3 (1-77)||(26014924-26015000)
chr3 (1-73)||(44856065-44856137)
chr3 (1-72)||(44413283-44413354)
chr3 (1-72)||(47472441-47472512)
chr3 (10-72)||(7934095-7934157)
chr3 (2-72)||(19149103-19149173)
chr3 (3-73)||(33939352-33939422)
chr3 (3-73)||(35376968-35377038)
chr3 (2-72)||(37503635-37503705)
chr3 (1-73)||(13348021-13348093)
chr3 (1-73)||(21217624-21217696)
chr3 (5-73)||(31157564-31157632)
chr3 (1-73)||(37056944-37057016)
chr3 (5-73)||(38926744-38926812)
chr3 (1-69)||(42358529-42358597)
chr3 (1-73)||(52326131-52326203)
chr3 (3-74)||(55151603-55151674)
chr3 (2-72)||(288839-288909)
chr3 (7-69)||(7668079-7668141)
chr3 (1-71)||(23592570-23592640)
chr3 (1-71)||(24256660-24256730)
chr3 (3-77)||(28539623-28539697)
chr3 (1-71)||(35597274-35597344)
chr3 (1-73)||(5114190-5114262)
chr3 (3-71)||(23600707-23600775)
chr3 (1-73)||(37302658-37302730)
chr3 (1-73)||(44383301-44383373)
chr3 (1-68)||(5244341-5244408)
chr3 (2-73)||(44445407-44445478)
chr3 (3-44)||(45711355-45711396)
chr3 (1-69)||(8847222-8847289)
chr3 (5-73)||(44813252-44813320)
chr3 (18-73)||(42478086-42478143)
chr3 (1-46)||(20547904-20547949)
chr3 (41-78)||(41505631-41505668)
chr3 (5-73)||(25641470-25641538)
[»] chr2 (29 HSPs)
chr2 (1-81)||(43487491-43487571)
chr2 (1-78)||(2076681-2076758)
chr2 (2-73)||(18254096-18254167)
chr2 (3-73)||(9990805-9990875)
chr2 (1-73)||(22888704-22888776)
chr2 (1-71)||(9207702-9207772)
chr2 (3-73)||(9647246-9647316)
chr2 (1-73)||(1248798-1248870)
chr2 (1-69)||(6049236-6049304)
chr2 (1-73)||(32477444-32477516)
chr2 (2-74)||(41195697-41195769)
chr2 (1-73)||(42421785-42421857)
chr2 (2-73)||(37737858-37737929)
chr2 (11-73)||(21611542-21611604)
chr2 (1-73)||(9760130-9760202)
chr2 (2-73)||(3097748-3097819)
chr2 (3-77)||(3838763-3838837)
chr2 (1-71)||(41056636-41056706)
chr2 (3-76)||(27490614-27490687)
chr2 (1-73)||(9194353-9194425)
chr2 (1-73)||(25270469-25270541)
chr2 (5-72)||(7698287-7698354)
chr2 (2-73)||(41042367-41042438)
chr2 (3-73)||(13333057-13333127)
chr2 (1-72)||(19633394-19633466)
chr2 (1-72)||(19830295-19830367)
chr2 (3-73)||(8848584-8848654)
chr2 (1-71)||(34944979-34945049)
chr2 (41-73)||(22416353-22416385)
[»] chr7 (23 HSPs)
chr7 (2-83)||(43025453-43025534)
chr7 (1-73)||(43942744-43942816)
chr7 (1-72)||(38956506-38956577)
chr7 (6-72)||(41989628-41989694)
chr7 (1-73)||(3937010-3937082)
chr7 (1-73)||(25192804-25192876)
chr7 (1-74)||(24614202-24614275)
chr7 (3-78)||(3614328-3614403)
chr7 (1-72)||(44895460-44895531)
chr7 (2-74)||(35072248-35072320)
chr7 (1-73)||(46022154-46022226)
chr7 (1-71)||(32529745-32529815)
chr7 (5-78)||(40112836-40112909)
chr7 (1-73)||(7701656-7701728)
chr7 (2-74)||(31445431-31445503)
chr7 (2-74)||(35098589-35098661)
chr7 (1-74)||(41189427-41189502)
chr7 (1-72)||(22918057-22918128)
chr7 (3-72)||(45851095-45851164)
chr7 (1-72)||(40417886-40417957)
chr7 (13-70)||(32803813-32803870)
chr7 (15-72)||(46578023-46578080)
chr7 (1-73)||(48062169-48062241)
[»] chr8 (24 HSPs)
chr8 (3-71)||(36660339-36660407)
chr8 (1-72)||(42768316-42768387)
chr8 (1-78)||(22719552-22719629)
chr8 (2-73)||(12898816-12898887)
chr8 (2-76)||(24479336-24479410)
chr8 (1-75)||(34186719-34186793)
chr8 (1-74)||(11253428-11253501)
chr8 (1-74)||(32501082-32501155)
chr8 (1-73)||(37449312-37449384)
chr8 (1-76)||(29025372-29025447)
chr8 (2-73)||(43397894-43397965)
chr8 (1-66)||(36251438-36251503)
chr8 (1-73)||(27325870-27325942)
chr8 (3-73)||(37133749-37133819)
chr8 (3-78)||(36816498-36816573)
chr8 (2-72)||(7271963-7272033)
chr8 (1-66)||(5277393-5277458)
chr8 (5-78)||(10839364-10839437)
chr8 (1-73)||(13106592-13106664)
chr8 (1-72)||(4054174-4054245)
chr8 (2-72)||(23754594-23754664)
chr8 (5-71)||(32133439-32133505)
chr8 (10-75)||(10692552-10692617)
chr8 (41-73)||(31249423-31249455)
[»] chr1 (41 HSPs)
chr1 (1-73)||(27464944-27465016)
chr1 (1-73)||(31088293-31088365)
chr1 (2-81)||(3981905-3981984)
chr1 (2-73)||(19055646-19055717)
chr1 (1-72)||(26469471-26469542)
chr1 (2-73)||(45121368-45121439)
chr1 (1-72)||(50726136-50726207)
chr1 (1-73)||(649881-649953)
chr1 (1-73)||(21401510-21401582)
chr1 (2-72)||(48470752-48470822)
chr1 (1-74)||(33100920-33100993)
chr1 (1-66)||(50932416-50932481)
chr1 (1-68)||(35369812-35369879)
chr1 (1-72)||(37619656-37619727)
chr1 (1-72)||(44519039-44519110)
chr1 (7-73)||(45640419-45640485)
chr1 (1-72)||(2571747-2571819)
chr1 (1-73)||(23645523-23645595)
chr1 (1-73)||(37274920-37274992)
chr1 (1-69)||(45333823-45333891)
chr1 (1-75)||(52576186-52576261)
chr1 (1-66)||(3851270-3851335)
chr1 (1-74)||(30735179-30735252)
chr1 (17-72)||(8350087-8350142)
chr1 (1-72)||(15469945-15470015)
chr1 (7-78)||(30570642-30570713)
chr1 (1-72)||(37685441-37685512)
chr1 (1-72)||(37700006-37700077)
chr1 (2-69)||(43775319-43775386)
chr1 (3-73)||(50149060-50149130)
chr1 (2-74)||(31827064-31827136)
chr1 (1-72)||(44914459-44914531)
chr1 (1-73)||(46907307-46907379)
chr1 (6-73)||(30467420-30467487)
chr1 (5-68)||(40861154-40861217)
chr1 (3-73)||(18434909-18434979)
chr1 (36-73)||(41677223-41677260)
chr1 (15-76)||(49647035-49647096)
chr1 (3-73)||(51718517-51718583)
chr1 (5-73)||(9566847-9566915)
chr1 (1-73)||(18512230-18512302)
[»] scaffold0056 (1 HSPs)
scaffold0056 (1-73)||(76506-76578)
[»] scaffold0519 (1 HSPs)
scaffold0519 (1-74)||(11894-11967)
[»] scaffold0199 (1 HSPs)
scaffold0199 (1-73)||(8780-8852)
[»] scaffold0098 (1 HSPs)
scaffold0098 (1-72)||(49407-49478)


Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 41 - 272
Target Start/End: Complemental strand, 1079883 - 1079652
Alignment:
Q  41 tcacatttatggatgttcaaataacacaactctaaaaagaaatggcaacctcagatgaagacaaggcaggcaaacatgagggggcaacgggcaggttagc 140  Q
    ||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1079883 tcacatttatgaatgttcaaataacacaactctaaaaaaaaatagcaacctcagatgaagacaaggcaggcaaacatgagggggcaacgggcaggttagc 1079784  T
Q  141 ttcaaccatttctgaacataaaacgttgtggtcagataaacaaaggctgccccctatagtcagcaaagtgagtaaaagatacagtatagtatagtatagt 240  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1079783 tttaaccatttctgaacataaaacgttgtggtcagataaacaaaggctgccccctatagtcagcaaagtgagtaaaagatacagtatagtatagtatagt 1079684  T
Q  241 aaagtatggtatccaatagctctattcatctc 272  Q
    | ||||||||||||||||||||||||| ||||    
T  1079683 atagtatggtatccaatagctctattcttctc 1079652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 28306091 - 28306020
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    ||||||||||||||||||||||| ||||| ||||||||| |||||| |||||||||||||||||||||||||    
T  28306091 cctcattttctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 28306020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 14051274 - 14051201
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactcta 74  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||  |||||||||||||||    
T  14051274 cctcattttctttgtaaaattttggttgtcacaaaagttatcacatatatggatgtttgaataacacaactcta 14051201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 26791202 - 26791121
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactctaaaaagaaat 83  Q
    ||||||| |||||||||||||| ||||| ||||||||| |||||| |||||||||||||||||||||||||| |||| ||||    
T  26791202 ctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactcttaaaaaaaat 26791121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 18258752 - 18258680
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||| |||||||||||||| ||||| ||||||||| |||||| ||||||||||||||||||||||||||    
T  18258752 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactct 18258680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 5168295 - 5168370
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactctaaa 76  Q
    ||||||||||||||||||||||| ||||| ||||||||| ||| || |||| ||||||||||||||||||||||||    
T  5168295 cctcattttctttgtaaaattttagttgtcacaaaagttgtcatatatatgaatgttcaaataacacaactctaaa 5168370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 7287148 - 7287077
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    ||||||||||||||||||||||| ||||| ||||||||| |||||| |||| ||||||||||||||||||||    
T  7287148 cctcattttctttgtaaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaactc 7287077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 15479581 - 15479652
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    ||||||||| |||||||||||||  |||| ||||||||| ||||||||||||||||||||||||||||||||    
T  15479581 cctcattttttttgtaaaattttaattgtcacaaaagttgtcacatttatggatgttcaaataacacaactc 15479652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 33037632 - 33037703
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||| |||||||||||||| ||||| ||||||||| |||||| |||||||||||||||||||||||||    
T  33037632 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 33037703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 1671654 - 1671726
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||| ||||||||||||||  |||| ||||||||| |||||| ||||||||||||||||||||||||||    
T  1671654 cctcatttcctttgtaaaattttgattgtcacaaaagttgtcacatatatggatgttcaaataacacaactct 1671726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 36739060 - 36739132
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||||  ||||||||||||| ||||| |||||| ||||||||| ||||||||||||||||||||||||||    
T  36739060 cctcatttcttttgtaaaattttggttgtcacaaaaattatcacatatatggatgttcaaataacacaactct 36739132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 8687003 - 8687075
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||||||||||||||||||  |||||| ||||||| |||||| |||| ||||||||||||||| |||||    
T  8687003 cctcattttctttgtaaaattttgattgttataaaagttgtcacatatatgaatgttcaaataacactactct 8687075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 41321367 - 41321438
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||| |||||||||||||| ||||| |||||| || |||||| ||||||| |||||||||||||||||    
T  41321367 cctcatttcctttgtaaaattttggttgtcacaaaaattgtcacatatatggatattcaaataacacaactc 41321438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 1764336 - 1764406
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaact 71  Q
    |||||||| |||| ||||||||| ||||| ||||||||| |||||| |||| |||||||||||||||||||    
T  1764336 cctcatttcctttctaaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaact 1764406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 17626098 - 17626170
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||||||||| ||||||||| |||||  |||||||| ||| ||  |||||||||||||||||||||||||    
T  17626098 cctcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactct 17626170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 35634785 - 35634722
Alignment:
Q  10 ctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||||||||| ||| | | ||||||| |||||| ||||||||||||||||||||||||||    
T  35634785 ctttgtaaaattttggttatcataaaagttgtcacatatatggatgttcaaataacacaactct 35634722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 3565196 - 3565270
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactctaa 75  Q
    ||||||||||||||||||||||| |||||  |||||||| ||||     ||||||||||||||||||||||||||    
T  3565196 cctcattttctttgtaaaattttggttgtctcaaaagttgtcactcaagtggatgttcaaataacacaactctaa 3565270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 7552924 - 7552854
Alignment:
Q  3 tcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||||||| |||||||| ||||| ||||||||| |||  |  |||||||||||||||||||||||||    
T  7552924 tcattttctttgcaaaattttggttgtcacaaaagttgtcatctaaatggatgttcaaataacacaactct 7552854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 7076525 - 7076464
Alignment:
Q  3 tcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataa 64  Q
    |||||| |||||||||||||| ||||| ||||||||| |||||| |||| ||||||||||||    
T  7076525 tcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataa 7076464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 13168635 - 13168704
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaact 71  Q
    ||||||| ||||||||||||||  |||| ||||||||| |||||| |||| ||||| |||||||||||||    
T  13168635 ctcatttcctttgtaaaattttgattgtcacaaaagttgtcacatatatgaatgttgaaataacacaact 13168704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 1274479 - 1274546
Alignment:
Q  10 ctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactctaaaaa 78  Q
    |||||||||||||| ||||  | ||||||| |||||| |||||||||||||||||||||||||| ||||    
T  1274479 ctttgtaaaattttggttgc-ataaaagttgtcacatatatggatgttcaaataacacaactcttaaaa 1274546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 22972233 - 22972301
Alignment:
Q  5 attttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||||||||||||||| |||||  |||||||| | | ||  |||||||||||||||||||||||||    
T  22972233 attttctttgtaaaattttagttgtctcaaaagttgttatataaatggatgttcaaataacacaactct 22972301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 28467412 - 28467340
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||| |||| ||||||||| ||||| |||||| || |||||| |||| ||||||| |||||||||||||    
T  28467412 cctcatttcctttataaaattttggttgtcacaaaaattgtcacatatatgaatgttcagataacacaactct 28467340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 14923185 - 14923256
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    ||||||||  ||||||||||||| ||| | || |||||| |||||| ||| |||||||||||||||||||||    
T  14923185 cctcatttcttttgtaaaattttggttttcacgaaagttgtcacatatatcgatgttcaaataacacaactc 14923256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 39591793 - 39591864
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||||||||||||| ||| ||||| ||||| ||| ||| ||  || ||||||||||||||||||||||    
T  39591793 ctcattttctttgtaaaactttggttgtcacaaaggttgtcatataaatagatgttcaaataacacaactct 39591864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 39592185 - 39592256
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||||||||||||| ||| ||||| ||||| ||| ||| ||  || ||||||||||||||||||||||    
T  39592185 ctcattttctttgtaaaactttggttgtcacaaaggttgtcatataaatagatgttcaaataacacaactct 39592256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 2972436 - 2972504
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaa 69  Q
    |||||||| ||| || |||||||  |||| ||||||||| |||||| |||  |||||||||||||||||    
T  2972436 cctcatttccttcgtgaaattttgattgtcacaaaagttgtcacatatataaatgttcaaataacacaa 2972504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 26724931 - 26724858
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactcta 74  Q
    |||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26724931 cctcatttcctttgtaaaattttagttgttacaaaagttatcacatatatggatgttcaaataacacaactcta 26724858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 26732337 - 26732409
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||||||||||||||||||| ||||| ||||||||| |||||| ||||||||||||||||||||||||||    
T  26732337 cctcattttctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactct 26732409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 51986154 - 51986226
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||| |||||||||||||| ||||| ||||||||| |||||| ||||||||||||||||||||||||||    
T  51986154 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactct 51986226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 27051044 - 27050973
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||||||||||||||||| ||||| ||||||||| ||||||||||| |||||||||||||||| ||||    
T  27051044 ctcattttctttgtaaaattttggttgtcacaaaagttgtcacatttatgaatgttcaaataacacatctct 27050973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 46213082 - 46213153
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||| |||||||||||||| ||||||||||||||| |||||| ||||||| |||||||||||||||||    
T  46213082 cctcatttcctttgtaaaattttggttgttacaaaagttttcacatatatggattttcaaataacacaactc 46213153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 53801718 - 53801647
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||| |||||||||||||| ||||| ||||||||| |||||| |||||||||||||||||||||||||    
T  53801718 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 53801647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 23369291 - 23369219
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||| |||||||| ||||| ||||| ||||||||| |||||| ||||||||||||||||||||||||||    
T  23369291 cctcatttcctttgtaagattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactct 23369219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 44539846 - 44539918
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||| |||||||||||||| ||||| ||||||||| |||||| |||| |||||||||||||||||||||    
T  44539846 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaactct 44539918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 15175658 - 15175729
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||| |||||||||||||| ||||| ||||||||| |||||| ||||||||||||||||| |||||||    
T  15175658 cctcatttcctttgtaaaattttggttgtaacaaaagttgtcacatatatggatgttcaaataatacaactc 15175729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 29175338 - 29175409
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||| |||||||||||||| ||||| ||||||||| |||||| |||| |||||||||||||||||||||    
T  29175338 ctcatttactttgtaaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaactct 29175409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 36178018 - 36178093
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactctaaa 76  Q
    |||||||| |||| ||||||||| ||||| |||||||||||||||| |||  ||||||||||||||||||||||||    
T  36178018 cctcatttcctttataaaattttagttgtcacaaaagttatcacatatataaatgttcaaataacacaactctaaa 36178093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 10250472 - 10250406
Alignment:
Q  3 tcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaa 69  Q
    ||||||||||||||||||||| ||||| ||||||||| || ||| ||||||||||||||||||||||    
T  10250472 tcattttctttgtaaaattttggttgtcacaaaagttgtcgcatatatggatgttcaaataacacaa 10250406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 38376448 - 38376378
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    ||||||||||||||||||||||  |||| |||||| ||||||||| ||| |||||||||||||||||||||    
T  38376448 ctcattttctttgtaaaattttgattgtcacaaaaattatcacatatatagatgttcaaataacacaactc 38376378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 37997366 - 37997438
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||||||||||||||||||| ||||| |||||| ||||||||| ||| |||||||||||| |||| ||||    
T  37997366 cctcattttctttgtaaaattttggttgtaacaaaaattatcacatatatagatgttcaaatagcacagctct 37997438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 43175096 - 43175167
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||| ||||||||||||||  || | ||||||||| |||||| |||||||||||||||||||||||||    
T  43175096 cctcatttcctttgtaaaattttgattatcacaaaagttgtcacatatatggatgttcaaataacacaactc 43175167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 27965111 - 27965173
Alignment:
Q  15 taaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactctaaaa 77  Q
    ||||||||| ||||| ||| ||||| |||||| ||||||||||||||||||||||||||||||    
T  27965111 taaaattttggttgtcacagaagttgtcacatatatggatgttcaaataacacaactctaaaa 27965173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 37297166 - 37297232
Alignment:
Q  7 tttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||| |||||||||||| ||||| ||||||||| ||| || ||||||||||||||||||||||||||    
T  37297166 tttccttgtaaaattttggttgtcacaaaagttgtcaaatatatggatgttcaaataacacaactct 37297232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 11068800 - 11068868
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaa 69  Q
    |||||||| |||||||||||||| ||||  ||||||||| |||||| |||| |||||||||||||||||    
T  11068800 cctcatttcctttgtaaaattttggttgccacaaaagttgtcacatatatgaatgttcaaataacacaa 11068868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 24575810 - 24575742
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaa 69  Q
    |||||||| |||| ||||||||| ||||| ||||||||| |||||| ||| ||||||||||||||||||    
T  24575810 cctcatttcctttataaaattttggttgtcacaaaagttgtcacatatatagatgttcaaataacacaa 24575742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 31641520 - 31641452
Alignment:
Q  5 attttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||| |||| ||||||||| ||||| |||||||||||||| | |||| |||||||||||||||||||||    
T  31641520 atttcctttataaaattttggttgtcacaaaagttatcacgtatatgaatgttcaaataacacaactct 31641452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 38382433 - 38382505
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||||||||| ||||||||| |||||  |||||||| ||| ||  |||||||||||||||||||||||||    
T  38382433 cctcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactct 38382505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 39478549 - 39478621
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||||||||||||||||||| ||||| ||||||||| ||| || |||||||||| ||  |||||||||||    
T  39478549 cctcattttctttgtaaaattttggttgtcacaaaagttgtcatatatatggatgtttaataaacacaactct 39478621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 47181953 - 47182025
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||||||||| ||||||||| |||||  |||||||| ||| ||  |||||||||||||||||||||||||    
T  47181953 cctcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactct 47182025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 48402156 - 48402084
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||||||||| ||||||||| |||||  |||||||| ||| ||  |||||||||||||||||||||||||    
T  48402156 cctcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactct 48402084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 2575748 - 2575677
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||||||||||||| ||| ||||| ||||||||| ||| ||  || ||||||||||||||||||||||    
T  2575748 ctcattttctttgtaaaactttagttgtcacaaaagttgtcatataaatagatgttcaaataacacaactct 2575677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 39440596 - 39440667
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||| |||| |||||||||  |||| ||||||||| |||||| |||| ||||||||||||||||||||    
T  39440596 cctcatttcctttctaaaattttgattgtcacaaaagttgtcacatatatgaatgttcaaataacacaactc 39440667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 26492121 - 26492191
Alignment:
Q  3 tcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||| ||||||||||||||  |||| |||||| || |||||| ||| ||||||||||||||||||||||    
T  26492121 tcatttcctttgtaaaattttgattgtcacaaaaattgtcacatatatagatgttcaaataacacaactct 26492191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 5622570 - 5622643
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactcta 74  Q
    |||||||| |||||||||||||| ||| | ||||||||| | |||| ||| ||| |||||||||||||||||||    
T  5622570 cctcatttcctttgtaaaattttagttatcacaaaagttgtgacatatatagatcttcaaataacacaactcta 5622643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 50721702 - 50721630
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactcta 74  Q
    |||||||||||||||||||||| |||||| |||| ||| ||| ||  |  |||||||||||||||||||||||    
T  50721702 ctcattttctttgtaaaattttagttgttgcaaaggttgtcatataaaatgatgttcaaataacacaactcta 50721630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 56364004 - 56363932
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||||||||| ||||||||| |||||  |||||||| |||  |  |||||||||||||||||||||||||    
T  56364004 cctcattttctttataaaattttggttgtctcaaaagttgtcatgtaaatggatgttcaaataacacaactct 56363932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 34616674 - 34616745
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||||||| ||||||||| |||||  |||||||| ||| ||  || ||||||||||||||||||||||    
T  34616674 ctcattttctttataaaattttggttgtctcaaaagttgtcatataaatagatgttcaaataacacaactct 34616745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 38134465 - 38134528
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataa 64  Q
    |||||||| |||||||||||||| ||| | ||||||||| |||||| |||| ||||||||||||    
T  38134465 cctcatttcctttgtaaaattttggttatcacaaaagttgtcacatgtatgaatgttcaaataa 38134528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 45083086 - 45083149
Alignment:
Q  3 tcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataaca 66  Q
    ||||||||||| |||||||||  |||| | ||||||| |||||| |||||||||||||||||||    
T  45083086 tcattttctttataaaattttgattgtaataaaagttgtcacatatatggatgttcaaataaca 45083149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 5233621 - 5233558
Alignment:
Q  9 tctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||||||||||  ||||| |||||||| | ||||  || |||||||||||||||||||||    
T  5233621 tctttgtaaaattttgattgtttcaaaagttgttacataaatagatgttcaaataacacaactc 5233558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 53786142 - 53786103
Alignment:
Q  33 aaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    ||||||| |||||| |||||||||||||||||||||||||    
T  53786142 aaaagttgtcacatatatggatgttcaaataacacaactc 53786103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 7632419 - 7632349
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||| ||||||||||||| |||||| |||| ||| ||| ||  |  |||||||||||||||||||||    
T  7632419 ctcattttatttgtaaaattttggttgttgcaaaggttgtcatataaaatgatgttcaaataacacaactc 7632349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 26908027 - 26907970
Alignment:
Q  15 taaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||||  |||| | |||| ||||||||| ||||||| |||||||||||||||||    
T  26908027 taaaattttaattgtcataaaaattatcacatatatggatattcaaataacacaactc 26907970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 2268438 - 2268406
Alignment:
Q  41 tcacatttatggatgttcaaataacacaactct 73  Q
    |||||| ||||||||||||||||||||||||||    
T  2268438 tcacatatatggatgttcaaataacacaactct 2268406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 42853689 - 42853761
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||||||||| |||||||||  ||||  ||||| || ||||    |||||||||||||||||||||||||    
T  42853689 cctcattttctttataaaattttgattgtctcaaaaattgtcactcaaatggatgttcaaataacacaactct 42853761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 46634235 - 46634271
Alignment:
Q  36 agttatcacatttatggatgttcaaataacacaactc 72  Q
    |||| |||||| |||||||||||||||||||||||||    
T  46634235 agttgtcacatatatggatgttcaaataacacaactc 46634271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 32316887 - 32316814
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactcta 74  Q
    ||||||||||||||||||||||| ||||| ||||||||| |||||| |||||||||||||||||||||||||||    
T  32316887 cctcattttctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactcta 32316814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 552905 - 552976
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||| |||||||||||||| ||||| ||||||||| |||||| |||||||||||||||||||||||||    
T  552905 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 552976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 34047504 - 34047571
Alignment:
Q  6 ttttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||| ||||||    
T  34047504 ttttctttgtaaaattttggttgtcacaaaagttgtcacatttatggatgttcaaataacaaaactct 34047571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 26595461 - 26595533
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||||||||||||||||||| |||||| |||||||| ||| ||  |||||||||||||||||||||||||    
T  26595461 cctcattttctttgtaaaattttggttgtttcaaaagttgtcatataaatggatgttcaaataacacaactct 26595533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 15974722 - 15974792
Alignment:
Q  3 tcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||| |||||||||||||| ||||| ||||||||| | |||| ||||||||||||||||||||||||||    
T  15974722 tcatttcctttgtaaaattttggttgtcacaaaagttgttacatatatggatgttcaaataacacaactct 15974792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 18737526 - 18737460
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacac 67  Q
    ||||||||||||||||||||||| ||||| ||||||||| ||||||  |||||||||||||||||||    
T  18737526 cctcattttctttgtaaaattttggttgtcacaaaagttgtcacatacatggatgttcaaataacac 18737460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 1156833 - 1156909
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactctaaaaa 78  Q
    ||||||| ||||  ||||||||  |||| ||||||||||||| || |||||||||||||||||||||||||||||||    
T  1156833 ctcatttcctttacaaaattttgattgtcacaaaagttatcaaatatatggatgttcaaataacacaactctaaaaa 1156909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 33430321 - 33430249
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||| |||||||||||||| ||||| ||||||||| |||||| |||| |||| ||||||||||||||||    
T  33430321 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatgaatgtccaaataacacaactct 33430249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 16199562 - 16199634
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||||||||| ||||||||| |||||  |||||||| ||| ||  |||||||||||||||||||||||||    
T  16199562 cctcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactct 16199634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 31077906 - 31077977
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    ||||| || |||||||||||||| ||||| ||||||||| |||||| |||| || |||||||||||||||||    
T  31077906 cctcacttcctttgtaaaattttggttgtcacaaaagttgtcacatgtatgaatattcaaataacacaactc 31077977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 13689953 - 13689882
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||| |||| ||||||||| |||||   |||| || |||||| |||||||||||||||||||||||||    
T  13689953 cctcatttcctttataaaattttagttgtcgtaaaaattgtcacatatatggatgttcaaataacacaactc 13689882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 14818044 - 14818115
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||| |||| ||||||||| ||||| ||||||||| ||| || |||  ||||||||||||||||||||    
T  14818044 cctcatttcctttctaaaattttggttgtcacaaaagttgtcatatatataaatgttcaaataacacaactc 14818115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 11612300 - 11612370
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaact 71  Q
    |||||||||||||||||||||||  || | |||||| ||||||||| |||  || ||||||||||||||||    
T  11612300 cctcattttctttgtaaaattttgattatcacaaaaattatcacatatataaatattcaaataacacaact 11612370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 4820479 - 4820556
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactctaaaaa 78  Q
    |||||||||||||||||||||||  ||||  ||||||||||||  |  || | |||||||||||||||||||| ||||    
T  4820479 cctcattttctttgtaaaattttgattgtctcaaaagttatcatgtaaatagttgttcaaataacacaactcttaaaa 4820556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 22079520 - 22079451
Alignment:
Q  3 tcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||||||| |||||||| ||||| ||||||||  |||  |  ||||||||||||||||||||||||    
T  22079520 tcattttctttgcaaaattttggttgtcacaaaagtggtcatctaaatggatgttcaaataacacaactc 22079451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 72
Target Start/End: Complemental strand, 5080502 - 5080467
Alignment:
Q  37 gttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||||| |||||||||||||||||||||||||    
T  5080502 gttatcacatatatggatgttcaaataacacaactc 5080467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 5694110 - 5694039
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||| |||||||||||||  |||||  |||||||| ||||||  ||| ||||| ||||||||||||||    
T  5694110 cctcatttcctttgtaaaatttaggttgtctcaaaagttgtcacatacatgaatgtttaaataacacaactc 5694039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 24900887 - 24900958
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||||||||||||||||||  ||||| |||| ||| ||| ||  |  ||||||||||||||||||||||    
T  24900887 ctcattttctttgtaaaattttaattgttgcaaatgttgtcatataaaatgatgttcaaataacacaactct 24900958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 30423511 - 30423436
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactctaaa 76  Q
    ||||||||||||| ||||  |||  ||||  |||||||||||||||  || |||||||||||||||||| ||||||    
T  30423511 cctcattttctttataaagctttgattgtatcaaaagttatcacataaatagatgttcaaataacacaaatctaaa 30423436  T

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Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 46)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 46624019 - 46624091
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||||||||||||||||||  |||| |||||||||||||||| ||||||||||||||||||||||||||    
T  46624019 cctcattttctttgtaaaattttgattgtcacaaaagttatcacatgtatggatgttcaaataacacaactct 46624091  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 41309229 - 41309302
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactcta 74  Q
    |||||||||||||||||||||||  |||| |||||||||||| ||| |||||||||||||||||||||||||||    
T  41309229 cctcattttctttgtaaaattttgattgtcacaaaagttatcgcatatatggatgttcaaataacacaactcta 41309302  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 52939763 - 52939840
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactctaaaaa 78  Q
    |||||||| |||||||||||||| ||||| || |||||| |||||| |||||||||||||||||||||||||||||||    
T  52939763 cctcatttcctttgtaaaattttggttgtcacgaaagttgtcacatatatggatgttcaaataacacaactctaaaaa 52939840  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 27541461 - 27541389
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||| |||||||||||||| ||||| ||||||||| |||||| ||||||||||||||||||||||||||    
T  27541461 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactct 27541389  T

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Target: chr3; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 16969525 - 16969454
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||| |||||||||||||| ||||| ||||||||| |||||| |||||||||||||||||||||||||    
T  16969525 cctcatttcctttgtaaaattttagttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 16969454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 32924240 - 32924169
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||| |||||||||||||| ||||| ||||||||| |||||| |||||||||||||||||||||||||    
T  32924240 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 32924169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 36670973 - 36670902
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    ||||||||  ||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||    
T  36670973 cctcatttcatttgtaaaattttggttgtcacaaaagttatcacatatatggatgttcaaataacacaactc 36670902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 13735842 - 13735913
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||| ||||| |||||||| ||||| ||||||||| |||||| |||||||||||||||||||||||||    
T  13735842 cctcatttcctttgcaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 13735913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 42357043 - 42356972
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||| |||||||||||||| ||||| |||||| || |||||| |||||||||||||||||||||||||    
T  42357043 cctcatttcctttgtaaaattttggttgtcacaaaaattgtcacatatatggatgttcaaataacacaactc 42356972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 52254097 - 52254024
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactcta 74  Q
    |||||||| |||||||||||||| ||||| |||||| || |||||| ||||||||||||||| |||||||||||    
T  52254097 cctcatttcctttgtaaaattttagttgtcacaaaaattgtcacatatatggatgttcaaatgacacaactcta 52254024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 26014924 - 26015000
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactctaaaa 77  Q
    |||||||| |||||||||||||| ||||| ||||||||| |||||| ||| |||||| |||||||||||||| ||||    
T  26014924 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatgtatagatgtttaaataacacaactcgaaaa 26015000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 44856065 - 44856137
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||| |||||||||||||| ||||| | | ||||| |||||| ||||||||||||||||||||||||||    
T  44856065 cctcatttcctttgtaaaattttggttgtcatacaagttgtcacatatatggatgttcaaataacacaactct 44856137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 44413354 - 44413283
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||| ||||||||||||||  |||| ||||||||| |||||| ||| |||||||||||||||||||||    
T  44413354 cctcatttcctttgtaaaattttaattgtcacaaaagttgtcacatatatagatgttcaaataacacaactc 44413283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 47472441 - 47472512
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||| |||||||||||||| ||||| ||||||||| |||||| ||| ||||||||||||||| |||||    
T  47472441 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatagatgttcaaataacataactc 47472512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 7934095 - 7934157
Alignment:
Q  10 ctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||||||||| ||||| |||||| || |||||| |||||||||||||||||||||||||    
T  7934095 ctttgtaaaattttagttgtcacaaaaattgtcacatatatggatgttcaaataacacaactc 7934157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 19149103 - 19149173
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    ||||||| ||||||||||||||  |||| |||||| || |||||| |||||||||||||||||||||||||    
T  19149103 ctcatttcctttgtaaaattttgattgtcacaaaaattgtcacatatatggatgttcaaataacacaactc 19149173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 33939352 - 33939422
Alignment:
Q  3 tcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||| ||||| | |||||| ||||| ||||||||| |||||| ||||||||||||||||||||||||||    
T  33939352 tcatttcctttgaataattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactct 33939422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 35377038 - 35376968
Alignment:
Q  3 tcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||||||||||||||||| ||||| ||||||||| |||  |  |||||||||||||||||||||||||    
T  35377038 tcattttctttgtaaaattttggttgtcacaaaagttgtcatctaaatggatgttcaaataacacaactct 35376968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 37503705 - 37503635
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    ||||||| ||||| |||||||| ||||| |||||||||||||||| |||  ||||||||||||||||||||    
T  37503705 ctcatttcctttgcaaaattttggttgtcacaaaagttatcacatatataaatgttcaaataacacaactc 37503635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 13348093 - 13348021
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||||||||||||||||||| |||||  |||||||| ||| ||  |||||||||||||||||| ||||||    
T  13348093 cctcattttctttgtaaaattttggttgtcccaaaagttgtcatataaatggatgttcaaataacataactct 13348021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 21217624 - 21217696
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||||||||| ||||||||| |||||  |||||||| ||| ||  |||||||||||||||||||||||||    
T  21217624 cctcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactct 21217696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 31157632 - 31157564
Alignment:
Q  5 attttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||| ||||||||||||||  | || ||| |||||||||||| ||||||||||||||||||||||||||    
T  31157632 atttcctttgtaaaattttgatagtcacagaagttatcacatatatggatgttcaaataacacaactct 31157564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 37057016 - 37056944
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||||||||||||||| || |||||  |||||||| ||| ||  |||||||||||||||||||||||||    
T  37057016 cctcattttctttgtaaaatattggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactct 37056944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 38926744 - 38926812
Alignment:
Q  5 attttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||| |||||||||||||| ||||| || |||||| |||||| ||| ||||||||||||||||||||||    
T  38926744 atttcctttgtaaaattttggttgtcacgaaagttgtcacatatatagatgttcaaataacacaactct 38926812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 42358597 - 42358529
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaa 69  Q
    |||||||| ||||| ||||||||  |||| ||||||||| |||||| ||||||||||||||||||||||    
T  42358597 cctcatttcctttgcaaaattttgattgtcacaaaagttgtcacatatatggatgttcaaataacacaa 42358529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 52326131 - 52326203
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||| ||||||||||||||  |||| | ||||||| ||| || ||||||||||||||||||||||||||    
T  52326131 cctcatttcctttgtaaaattttgattgtcataaaagttgtcatatatatggatgttcaaataacacaactct 52326203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 55151674 - 55151603
Alignment:
Q  3 tcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactcta 74  Q
    |||||| ||||||||||||||  |||| ||||||||| |||||| |||  ||||||||||||||||||||||    
T  55151674 tcatttcctttgtaaaattttaattgtaacaaaagttgtcacatatataaatgttcaaataacacaactcta 55151603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 288839 - 288909
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||  |||||||||||||  ||||||||| |||| |||||| ||||||| |||||||||||||||||    
T  288839 ctcatttcttttgtaaaattttgattgttacaatagttgtcacatatatggattttcaaataacacaactc 288909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 7668141 - 7668079
Alignment:
Q  7 tttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaa 69  Q
    |||| ||| |||||||| ||||| ||||||||| |||||| ||||||||||||||||||||||    
T  7668141 tttccttgcaaaattttggttgtcacaaaagttgtcacatgtatggatgttcaaataacacaa 7668079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 23592570 - 23592640
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaact 71  Q
    ||||||||||||| ||||||||| |||||  |||||||| ||| ||  |||||||||||||||||||||||    
T  23592570 cctcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaact 23592640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 24256730 - 24256660
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaact 71  Q
    |||||||| ||||||||||||||  |||| ||||||||| |||||| ||| ||| ||||||||||||||||    
T  24256730 cctcatttcctttgtaaaattttaattgtcacaaaagttgtcacatatatagattttcaaataacacaact 24256660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 28539697 - 28539623
Alignment:
Q  3 tcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactctaaaa 77  Q
    |||||||||||| |||||||| ||| | |||||||||||||  |  ||||||||||||||||||||||| |||||    
T  28539697 tcattttctttgcaaaattttggttatcacaaaagttatcatctaaatggatgttcaaataacacaactttaaaa 28539623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 35597274 - 35597344
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaact 71  Q
    |||| ||| |||||||||||||| ||||| ||||||||| |||||| |||| || ||||||||||||||||    
T  35597274 cctcgtttcctttgtaaaattttggttgtcacaaaagttgtcacatatatgaatattcaaataacacaact 35597344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 5114190 - 5114262
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||||||||||||||||||  |||| | |||| || ||||||  || ||||||||||||||||||||||    
T  5114190 cctcattttctttgtaaaattttgattgtcataaaaattgtcacataaatagatgttcaaataacacaactct 5114262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 23600707 - 23600775
Alignment:
Q  3 tcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaact 71  Q
    ||||||||||| ||||||||| |||||  |||||||| ||| ||  |||||||||||||||||||||||    
T  23600707 tcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaact 23600775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 37302658 - 37302730
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||| ||||| ||||||||  |||| ||||||||| ||| || ||||||||||||||||| ||||||||    
T  37302658 cctcatttcctttgcaaaattttgattgtcacaaaagttgtcaaatgtatggatgttcaaataagacaactct 37302730  T

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Target: chr3; HSP #37
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 44383301 - 44383373
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||||||||| |||||||||  ||||  |||||||| ||| ||  |||||||||||||||||||||||||    
T  44383301 cctcattttctttataaaattttgattgtctcaaaagttgtcatataaatggatgttcaaataacacaactct 44383373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 5244341 - 5244408
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacaca 68  Q
    |||||||| |||||||||||||| ||||| |||||| || |||||| |||  ||||||||||||||||    
T  5244341 cctcatttcctttgtaaaattttggttgtcacaaaaattgtcacatatataaatgttcaaataacaca 5244408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 44445407 - 44445478
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||||||| ||||||||| ||||| | ||||||| | |||| ||| ||||||||||||||| ||||||    
T  44445407 ctcattttctttataaaattttggttgtcataaaagttgttacatatatcgatgttcaaataacataactct 44445478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 45711396 - 45711355
Alignment:
Q  3 tcattttctttgtaaaatttttgttgttacaaaagttatcac 44  Q
    ||||||||||||||||||||| ||||||||||||||| ||||    
T  45711396 tcattttctttgtaaaattttggttgttacaaaagttgtcac 45711355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 8847222 - 8847289
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaa 69  Q
    ||||||||| |||||||||||||  || | ||||||||| | |||| ||||||||||||||||||||||    
T  8847222 cctcattttatttgtaaaattttgattatcacaaaagttgt-acatatatggatgttcaaataacacaa 8847289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 44813252 - 44813320
Alignment:
Q  5 attttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||| ||||||||||||||  |||  ||||||||| |||||| ||| ||||||||||| ||||||||||    
T  44813252 atttcctttgtaaaattttgattgccacaaaagttgtcacatatatagatgttcaaatcacacaactct 44813320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 42478086 - 42478143
Alignment:
Q  18 aatttttgttgttacaaaagttatcacatttat--ggatgttcaaataacacaactct 73  Q
    |||||| ||||| ||||||||||||| || |||  |||||||||||||||||||||||    
T  42478086 aattttggttgtcacaaaagttatcatatatatatggatgttcaaataacacaactct 42478143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 20547949 - 20547904
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacat 46  Q
    |||||||| |||||||||||||| ||||| ||||||||| ||||||    
T  20547949 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacat 20547904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 41505631 - 41505668
Alignment:
Q  41 tcacatttatggatgttcaaataacacaactctaaaaa 78  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  41505631 tcacatatatggatgttcaaataacacaactcaaaaaa 41505668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 25641538 - 25641470
Alignment:
Q  5 attttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||| ||||||| ||| |||||  |||||||| ||| ||  |||||||||||||||| ||||||||    
T  25641538 attttctatgtaaaactttggttgtctcaaaagttgtcatataaatggatgttcaaataatacaactct 25641470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 43487491 - 43487571
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactctaaaaagaa 81  Q
    |||||||| |||||||||||||| |||||||||||| || |||||| |||||||||||||||||||||||||| |||||||    
T  43487491 cctcatttcctttgtaaaattttggttgttacaaaaattgtcacatatatggatgttcaaataacacaactcttaaaagaa 43487571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 2076681 - 2076758
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactctaaaaa 78  Q
    ||||||||||||||||||||||| ||||| ||||||||| |||||| ||| |||||||||||||||||||||| ||||    
T  2076681 cctcattttctttgtaaaattttggttgtcacaaaagttgtcacatctattgatgttcaaataacacaactcttaaaa 2076758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 18254167 - 18254096
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||| |||||||||||||| ||||| ||||||||| |||||| ||||||||||||||||||||||||||    
T  18254167 ctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactct 18254096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 9990805 - 9990875
Alignment:
Q  3 tcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||| ||||||||||||||  |||| |||||||||||||||| ||||||||||||||||||||||||||    
T  9990805 tcatttcctttgtaaaattttaattgtcacaaaagttatcacatatatggatgttcaaataacacaactct 9990875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 22888776 - 22888704
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||| ||||||||||||||  |||| ||||||||| |||||| ||||||||||||||||||||||||||    
T  22888776 cctcatttcctttgtaaaattttgattgtcacaaaagttgtcacatatatggatgttcaaataacacaactct 22888704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 9207702 - 9207772
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaact 71  Q
    |||||||| |||||||||||||| ||||| |||||| ||||||||| ||| ||||||||||||||||||||    
T  9207702 cctcatttcctttgtaaaattttggttgtcacaaaaattatcacatatatagatgttcaaataacacaact 9207772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 9647246 - 9647316
Alignment:
Q  3 tcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||| |||||||||||||| ||||| |||||||||||| ||| |||| |||||||||||||||||||||    
T  9647246 tcatttcctttgtaaaattttggttgtcacaaaagttatcgcatatatgaatgttcaaataacacaactct 9647316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 1248798 - 1248870
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||| ||||||||||||||  || | ||||||||| |||||| ||||||||||||||||||||||||||    
T  1248798 cctcatttcctttgtaaaattttaattatcacaaaagttgtcacatatatggatgttcaaataacacaactct 1248870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 6049304 - 6049236
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaa 69  Q
    |||||||| ||||||||||||||  |||| ||||||||| |||||| ||||||||||||||||||||||    
T  6049304 cctcatttcctttgtaaaattttgattgtcacaaaagttgtcacatatatggatgttcaaataacacaa 6049236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 32477444 - 32477516
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||| |||||| ||||||| ||||| ||||||||| |||||| |||| |||||||||||||||||||||    
T  32477444 cctcatttcctttgtcaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaactct 32477516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 41195697 - 41195769
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactcta 74  Q
    ||||||| |||||||||||||| ||||| ||||||||| | |||| |||| ||||||||||||||||||||||    
T  41195697 ctcatttcctttgtaaaattttggttgtcacaaaagttgttacatatatgaatgttcaaataacacaactcta 41195769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 42421857 - 42421785
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||| |||| ||||||||| ||||| ||||||||| |||||| |||| |||||||||||||||||||||    
T  42421857 cctcatttcctttctaaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaactct 42421785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 37737929 - 37737858
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||| ||||||||| |||| ||||| ||||||||| |||||| |||||| |||||||||||||||||||    
T  37737929 ctcatttcctttgtaaagttttggttgtcacaaaagttgtcacatatatggacgttcaaataacacaactct 37737858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 21611604 - 21611542
Alignment:
Q  11 tttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||||||||| ||||| | ||||||| |||||| ||||||||||||||||||||||||||    
T  21611604 tttgtaaaattttggttgtcataaaagttgtcacatatatggatgttcaaataacacaactct 21611542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 9760130 - 9760202
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||| ||| | |||||||| ||||| ||||||||| |||||| ||| ||||||||||||||||||||||    
T  9760130 cctcatttccttggaaaaattttggttgtcacaaaagttgtcacatatatagatgttcaaataacacaactct 9760202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 3097819 - 3097748
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||||||| ||||||||| |||||  |||||||| ||| ||  |||||||||||||||||||||||||    
T  3097819 ctcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactct 3097748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 3838837 - 3838763
Alignment:
Q  3 tcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactctaaaa 77  Q
    |||||| ||||||||||||||  || | ||||||||| |||||| ||| ||||||||||||||||||||| ||||    
T  3838837 tcatttcctttgtaaaattttaattatcacaaaagttgtcacatatatagatgttcaaataacacaactcaaaaa 3838763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 41056706 - 41056636
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaact 71  Q
    ||||||||||||| ||||||||| |||||  |||||||| ||| ||  |||||||||||||||||||||||    
T  41056706 cctcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaact 41056636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 27490687 - 27490614
Alignment:
Q  3 tcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactctaaa 76  Q
    |||||||||||||||||||||  |||| ||||||||| |||     ||||||||||||||||||||||||||||    
T  27490687 tcattttctttgtaaaattttgattgtcacaaaagttgtcatcaaaatggatgttcaaataacacaactctaaa 27490614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 9194353 - 9194425
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||||  ||||||||||||| ||||| |||||| || | |||| |||| |||||||||||||||||||||    
T  9194353 cctcatttcttttgtaaaattttggttgtcacaaaaattgttacatatatgaatgttcaaataacacaactct 9194425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 25270541 - 25270469
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||||||||| ||||||||| |||||  | |||||| ||| ||  |||||||||||||||||||||||||    
T  25270541 cctcattttctttataaaattttggttgtctcgaaagttgtcatataaatggatgttcaaataacacaactct 25270469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 7698287 - 7698354
Alignment:
Q  5 attttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||| ||||||||||||||  || | |||||||||||||||| ||| ||||||| |||||||||||||    
T  7698287 atttcctttgtaaaattttaattatcacaaaagttatcacatgtatagatgttctaataacacaactc 7698354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 41042367 - 41042438
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||| |||| ||||||||| ||||| | |||| || |||||| ||||||||||||||||||| ||||||    
T  41042367 ctcatttcctttataaaattttggttgtcataaaaattgtcacatatatggatgttcaaataacagaactct 41042438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 13333127 - 13333057
Alignment:
Q  3 tcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||||||| ||||||||| |||||  |||||||| ||| ||  || ||||||||||||||||||||||    
T  13333127 tcattttctttataaaattttggttgtctcaaaagttgtcatataaatcgatgttcaaataacacaactct 13333057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 19633394 - 19633466
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatc-acatttatggatgttcaaataacacaactc 72  Q
    |||||||| ||||||||||||||  |||| |||||||||||| |||| |||  |||||||||||| |||||||    
T  19633394 cctcatttcctttgtaaaattttgattgtcacaaaagttatcaacatatataaatgttcaaataatacaactc 19633466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 19830295 - 19830367
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatc-acatttatggatgttcaaataacacaactc 72  Q
    |||||||| ||||||||||||||  |||| |||||||||||| |||| |||  |||||||||||| |||||||    
T  19830295 cctcatttcctttgtaaaattttgattgtcacaaaagttatcaacatatataaatgttcaaataatacaactc 19830367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 8848654 - 8848584
Alignment:
Q  3 tcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||||||| ||||||||  |||| |||||| ||||||  |  || ||||||||||||||||||||||    
T  8848654 tcattttctttgcaaaattttgattgtcacaaaaattatcatctaaatagatgttcaaataacacaactct 8848584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 34945049 - 34944979
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaact 71  Q
    ||||||||  ||||||||||||| ||||| || |||||| |||||| |||| || ||||| ||||||||||    
T  34945049 cctcatttcttttgtaaaattttggttgtcacgaaagttgtcacatatatgaatattcaattaacacaact 34944979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 22416353 - 22416385
Alignment:
Q  41 tcacatttatggatgttcaaataacacaactct 73  Q
    |||||| ||||||||||||||||||||||||||    
T  22416353 tcacatatatggatgttcaaataacacaactct 22416385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 43025453 - 43025534
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactctaaaaagaaat 83  Q
    ||||||| |||||||||||||| ||||||||||||||| |||||| ||| ||||||| ||||||||||||||||||| ||||    
T  43025453 ctcatttcctttgtaaaattttagttgttacaaaagttgtcacatatatagatgttcgaataacacaactctaaaaaaaaat 43025534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 43942744 - 43942816
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||||||||||||||||||| ||||  |||||| ||||||||| ||||||||||||||||||||||||||    
T  43942744 cctcattttctttgtaaaattttggttgccacaaaaattatcacatatatggatgttcaaataacacaactct 43942816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 38956577 - 38956506
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||| |||||||||||||| ||||| ||||||||| |||||| |||||||||||||||||||||||||    
T  38956577 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 38956506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 41989694 - 41989628
Alignment:
Q  6 ttttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||| ||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||    
T  41989694 ttttttttgtaaaattttggttgtcacaaaagttatcacatatatggatgttcaaataacacaactc 41989628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 3937082 - 3937010
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||| |||| ||||||||| ||||| ||||||||| |||||| ||||||||||||||||||||||||||    
T  3937082 cctcatttcctttataaaattttggttgtcacaaaagttgtcacatgtatggatgttcaaataacacaactct 3937010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 25192876 - 25192804
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||||||||||||||||||| ||||| ||||||||| |||||| |||| || ||||||||||||||||||    
T  25192876 cctcattttctttgtaaaattttagttgtcacaaaagttgtcacatgtatgaatattcaaataacacaactct 25192804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 24614275 - 24614202
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactcta 74  Q
    |||||||| ||||||||||||||  || | |||||||||||||||| |||| ||||||||||||||||||||||    
T  24614275 cctcatttcctttgtaaaattttgattatcacaaaagttatcacatatatgaatgttcaaataacacaactcta 24614202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 3614403 - 3614328
Alignment:
Q  3 tcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactctaaaaa 78  Q
    ||||| ||||||||||||||| |||||| |||||||| ||| ||  |||||||||||||||||| |||||||||||    
T  3614403 tcattgtctttgtaaaattttggttgtttcaaaagttgtcatataaatggatgttcaaataacataactctaaaaa 3614328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 44895531 - 44895460
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||| |||||||||||||| ||||| ||||||||| | |||| ||||||||||||||||||| |||||    
T  44895531 cctcatttcctttgtaaaattttggttgtcacaaaagttgttacatatatggatgttcaaataacataactc 44895460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 35072320 - 35072248
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactcta 74  Q
    |||||||||||| ||||||||| |||||| |||||||| ||| ||  ||||||||||| ||||||||||||||    
T  35072320 ctcattttctttataaaattttggttgtttcaaaagttgtcatataaatggatgttcagataacacaactcta 35072248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 46022226 - 46022154
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||||||||| ||||||||| |||||  |||||||| ||| ||  |||||||||||||||||||||||||    
T  46022226 cctcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactct 46022154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 32529815 - 32529745
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaact 71  Q
    |||||||| ||||||||||||||  |||| |||||| || |||||| |||||||| |||||||||||||||    
T  32529815 cctcatttcctttgtaaaattttgattgtcacaaaaattgtcacatatatggatgctcaaataacacaact 32529745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 40112909 - 40112836
Alignment:
Q  5 attttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactctaaaaa 78  Q
    |||| ||||||||||||||  |||| | | ||||| | |||| |||||||||||||||||||||||||||||||    
T  40112909 atttcctttgtaaaattttgattgtcagagaagttgttacatatatggatgttcaaataacacaactctaaaaa 40112836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 7701656 - 7701728
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||||||||| ||||| ||| |||||  |||||||| ||| ||  |||||||||||||||||||||||||    
T  7701656 cctcattttctttataaaactttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactct 7701728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 31445431 - 31445503
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactcta 74  Q
    ||||||||||||||||||||||  ||||| ||||| |||||| ||  |  |||||||||||||||||||||||    
T  31445431 ctcattttctttgtaaaattttgattgttgcaaaaattatcatataaaatgatgttcaaataacacaactcta 31445503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 35098661 - 35098589
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactcta 74  Q
    |||||||||| | ||||||||| |||||| |||||||| ||| ||  |||||| |||||||||||||||||||    
T  35098661 ctcattttctatataaaattttggttgtttcaaaagttgtcatataaatggatattcaaataacacaactcta 35098589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 41189502 - 41189427
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcac--atttatggatgttcaaataacacaactcta 74  Q
    |||||||| ||||||||||||||  |||| | ||||||||||||  || |||| ||||||||||||||||||||||    
T  41189502 cctcatttcctttgtaaaattttgattgtcataaaagttatcacatatatatgaatgttcaaataacacaactcta 41189427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 22918128 - 22918057
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||| ||||||||||||||  ||||  |||||||| |||||| |||||||| |||||||| |||||||    
T  22918128 cctcatttcctttgtaaaattttgattgtcgcaaaagttgtcacatgtatggatgctcaaataatacaactc 22918057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 45851164 - 45851095
Alignment:
Q  3 tcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||| |||||||||||||| ||||| | |||| || | |||  |||||||||||||||||||||||||    
T  45851164 tcatttcctttgtaaaattttagttgtcaaaaaaattgtgacagatatggatgttcaaataacacaactc 45851095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 40417886 - 40417957
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    ||||| ||||||||||||||||| |||||  |||||||| ||  ||  || |||||||||||||||||||||    
T  40417886 cctcactttctttgtaaaattttggttgtctcaaaagttgtcgtataaatagatgttcaaataacacaactc 40417957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 32803813 - 32803870
Alignment:
Q  13 tgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaac 70  Q
    |||||||||||  ||||| |||||||| ||| ||  ||||||||||||||||||||||    
T  32803813 tgtaaaattttaattgtttcaaaagttgtcatataaatggatgttcaaataacacaac 32803870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 46578080 - 46578023
Alignment:
Q  15 taaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    ||||||||| ||||| | | || ||||||||| ||||||||||||||||| |||||||    
T  46578080 taaaattttggttgtcatagaaattatcacatatatggatgttcaaataagacaactc 46578023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 48062169 - 48062241
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||||||||| |||||||||  ||||  ||||| |||||||    | |||||||||||||||||||||||    
T  48062169 cctcattttctttataaaattttgattgtctcaaaaattatcactcaaacggatgttcaaataacacaactct 48062241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 36660407 - 36660339
Alignment:
Q  3 tcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaact 71  Q
    ||||||||||| |||||||||  |||| |||||||||||||||||||||||||||||||||||||||||    
T  36660407 tcattttctttataaaattttgattgtcacaaaagttatcacatttatggatgttcaaataacacaact 36660339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 42768316 - 42768387
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||| |||||||||||||| ||||| |||||| ||||||||| |||||||||||||||||||||||||    
T  42768316 cctcatttcctttgtaaaattttagttgtcacaaaaattatcacatatatggatgttcaaataacacaactc 42768387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 22719552 - 22719629
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactctaaaaa 78  Q
    ||||||||||||||||||||||| ||| | ||||||||| |||||| ||||| ||||||||||||||||||| |||||    
T  22719552 cctcattttctttgtaaaattttggttatcacaaaagttgtcacatatatggctgttcaaataacacaactcaaaaaa 22719629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 12898887 - 12898816
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||| |||||||||||||| ||||| ||||||||| |||||| ||||||||||||||||||| ||||||    
T  12898887 ctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacataactct 12898816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 24479336 - 24479410
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactctaaa 76  Q
    ||||||| |||||||||||||| ||||| ||||||||||||| || |||| ||| ||||||||||||||||||||    
T  24479336 ctcatttcctttgtaaaattttagttgtcacaaaagttatcatatatatgaatgctcaaataacacaactctaaa 24479410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 34186719 - 34186793
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactctaa 75  Q
    |||||||| ||||| ||||||||  |||| ||||||||| |||||| ||||||||||||||||||||||||||||    
T  34186719 cctcatttcctttgcaaaattttgattgtcacaaaagttgtcacatgtatggatgttcaaataacacaactctaa 34186793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 11253501 - 11253428
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactcta 74  Q
    ||||||||||||||||||||||| || || ||||||||| ||| |||||| ||||||||||||| |||||||||    
T  11253501 cctcattttctttgtaaaattttggtcgtcacaaaagttgtcatatttatagatgttcaaataatacaactcta 11253428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 32501155 - 32501082
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactcta 74  Q
    |||||||| |||||||||||||| ||||| |||||| || |||||| |||||||||||||||||||||| ||||    
T  32501155 cctcatttcctttgtaaaattttggttgtcacaaaaattctcacatatatggatgttcaaataacacaattcta 32501082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 37449384 - 37449312
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||| ||||||||||||||  || | |||||||||||||||| ||||||| ||||||||||||||||||    
T  37449384 cctcatttcctttgtaaaattttgattatcacaaaagttatcacatatatggatattcaaataacacaactct 37449312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 29025372 - 29025447
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactctaaa 76  Q
    ||||||||||||||||||||||| |||||  |||||||| ||| ||  ||||||||| ||||||||||||||||||    
T  29025372 cctcattttctttgtaaaattttggttgtcccaaaagttgtcatataaatggatgtttaaataacacaactctaaa 29025447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 43397894 - 43397965
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||||||||||||||||| ||||| ||||||| | |||||| ||||||||||||| ||||||| ||||    
T  43397894 ctcattttctttgtaaaattttggttgtcacaaaagctgtcacatgtatggatgttcaattaacacatctct 43397965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 36251438 - 36251503
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataaca 66  Q
    |||||||| ||||||||||||||  |||| || ||||||||||||| |||||||||||||||||||    
T  36251438 cctcatttcctttgtaaaattttgattgtcacgaaagttatcacatatatggatgttcaaataaca 36251503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 27325870 - 27325942
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||| ||||||||||||||  || | || |||||| |||||| ||||||||||||||||||||||||||    
T  27325870 cctcatttcctttgtaaaattttgattatcacgaaagttgtcacatatatggatgttcaaataacacaactct 27325942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 37133819 - 37133749
Alignment:
Q  3 tcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||||||||||||||||| ||||| ||||||||| |||  |  ||||||||| |||||||||||||||    
T  37133819 tcattttctttgtaaaattttggttgtcacaaaagttgtcatctaaatggatgttaaaataacacaactct 37133749  T

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Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 36816573 - 36816498
Alignment:
Q  3 tcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactctaaaaa 78  Q
    |||||||||||| ||||||||  || | ||||||||| |||||| ||| |||||||||||||||||| | ||||||    
T  36816573 tcattttctttgcaaaattttgattatcacaaaagttgtcacatatatagatgttcaaataacacaattgtaaaaa 36816498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 7271963 - 7272033
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||  |||| ||||||||  |||| ||||||||| |||||| |||||||||||| ||||||||||||    
T  7271963 ctcatttcttttgcaaaattttgattgtcacaaaagttgtcacatgtatggatgttcatataacacaactc 7272033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 5277458 - 5277393
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataaca 66  Q
    |||||||| ||||||||||||||  |||| ||| || || |||||| |||||||||||||||||||    
T  5277458 cctcatttcctttgtaaaattttgattgtcacataaattgtcacatgtatggatgttcaaataaca 5277393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 10839437 - 10839364
Alignment:
Q  5 attttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactctaaaaa 78  Q
    ||||||||||||||||||| |||||  ||||| |||||| |   ||||||||||||||||||| ||||| ||||    
T  10839437 attttctttgtaaaattttagttgtctcaaaaattatcataaaaatggatgttcaaataacactactcttaaaa 10839364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 13106592 - 13106664
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||| ||||||||||||| || | ||||||| ||||||| |||| |  |||| ||||||||||||||||||||    
T  13106592 cctctttttctttgtaaatttatggttgttataaaagttgtcacctaaatggttgttcaaataacacaactct 13106664  T

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Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 4054245 - 4054174
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    ||||||||  |||||||| ||||  |||| ||||||||| |||||| |||  ||||||||||||||||||||    
T  4054245 cctcatttcatttgtaaagttttgattgtcacaaaagttgtcacatatataaatgttcaaataacacaactc 4054174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 23754664 - 23754594
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||||||||||||||||| |||||| |||| ||| ||| ||  |   ||||||||||||||||||||    
T  23754664 ctcattttctttgtaaaattttggttgttgcaaaggttgtcatataaaataatgttcaaataacacaactc 23754594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 32133439 - 32133505
Alignment:
Q  5 attttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaact 71  Q
    ||||| ||||||||||||| ||| |  ||||| |||||| ||  |||||||||||||||||||||||    
T  32133439 attttatttgtaaaattttggttatctcaaaatttatcatataaatggatgttcaaataacacaact 32133505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 10692552 - 10692617
Alignment:
Q  10 ctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactctaa 75  Q
    ||||||||||||||  |||| | | |||||  ||||| ||||||||||||||||| ||||||||||    
T  10692552 ctttgtaaaattttgattgtcagagaagttgacacatatatggatgttcaaataatacaactctaa 10692617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 31249455 - 31249423
Alignment:
Q  41 tcacatttatggatgttcaaataacacaactct 73  Q
    |||||| ||||||||||||||||||||||||||    
T  31249455 tcacatatatggatgttcaaataacacaactct 31249423  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 27465016 - 27464944
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||| |||||||||||||| ||||| ||||||||| |||||| ||||||||||||||||||||||||||    
T  27465016 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactct 27464944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 31088293 - 31088365
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||||| ||||||||||||| ||||| ||||||||| |||||| ||||||||||||||||||||||||||    
T  31088293 cctcattttttttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactct 31088365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 3981984 - 3981905
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactctaaaaagaa 81  Q
    ||||||||||||||||||||||  |||| ||||| ||| |||||||||||||||||||||||||||||||| ||| ||||    
T  3981984 ctcattttctttgtaaaattttgattgtcacaaatgttgtcacatttatggatgttcaaataacacaactcaaaagagaa 3981905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 19055717 - 19055646
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||| |||||||||||||| ||||| ||||||||| |||||| ||||||||||||||||||||||||||    
T  19055717 ctcatttcctttgtaaaattttagttgtcacaaaagttgtcacatatatggatgttcaaataacacaactct 19055646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 26469471 - 26469542
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||| |||||||||||||| ||||| ||||||||| |||||| |||||||||||||||||||||||||    
T  26469471 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 26469542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 45121439 - 45121368
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||| |||||||||||||| ||||| ||||||||| |||||| ||||||||||||||||||||||||||    
T  45121439 ctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactct 45121368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 50726207 - 50726136
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||||||||| |||||||| ||||| |||||| ||||||||| |||||||||||||||||||||||||    
T  50726207 cctcattttctttgcaaaattttggttgtcacaaaaattatcacatatatggatgttcaaataacacaactc 50726136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 649881 - 649953
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||| |||||||||||||| ||||| ||||||||| |||||| | ||||||||||||||||||||||||    
T  649881 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatgtggatgttcaaataacacaactct 649953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 21401510 - 21401582
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||||||||||||||||||  ||||| |||||||| ||||||  |||||||||||||||||||||||||    
T  21401510 cctcattttctttgtaaaattttgattgtttcaaaagttgtcacataaatggatgttcaaataacacaactct 21401582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 48470752 - 48470822
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    ||||||| ||||||||||||||  |||| ||||||||| |||||| |||||||||||||||||||||||||    
T  48470752 ctcatttcctttgtaaaattttgattgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 48470822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 33100920 - 33100993
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactcta 74  Q
    |||||||| |||| ||||||||| ||||| ||||||||| |||||| |||| ||||||||||||||||||||||    
T  33100920 cctcatttcctttataaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaactcta 33100993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 50932416 - 50932481
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataaca 66  Q
    |||||||| |||||||||||||| ||||| ||||||||| |||||| |||||||||||||||||||    
T  50932416 cctcatttcctttgtaaaattttggttgtaacaaaagttgtcacatatatggatgttcaaataaca 50932481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 35369812 - 35369879
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacaca 68  Q
    |||||||| |||| ||||||||| ||||| ||||||||| |||||| |||||||||||||||||||||    
T  35369812 cctcatttcctttataaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacaca 35369879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 37619656 - 37619727
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||| |||||||||||||| ||||| | ||||||| |||||| ||||||||||||||||||| |||||    
T  37619656 cctcatttcctttgtaaaattttggttgtaataaaagttgtcacatatatggatgttcaaataacataactc 37619727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 44519110 - 44519039
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||| |||||||||||||| ||| | ||||||||| |||||| |||| ||||||||||||||||||||    
T  44519110 cctcatttcctttgtaaaattttggttatcacaaaagttgtcacatatatgaatgttcaaataacacaactc 44519039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 45640419 - 45640485
Alignment:
Q  7 tttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||||||||||||| ||||  ||||||||| |||||| ||| ||||||||||||||||||||||    
T  45640419 tttctttgtaaaattttggttgcaacaaaagttgtcacatatatagatgttcaaataacacaactct 45640485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 2571747 - 2571819
Alignment:
Q  1 cctcattttctttgt-aaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    ||||||||||||||| |||||||| ||||| ||||||||| ||| ||  ||||||||||||||||||||||||    
T  2571747 cctcattttctttgttaaaattttggttgtcacaaaagttgtcatatgcatggatgttcaaataacacaactc 2571819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 23645523 - 23645595
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||| |||||||||||||| ||||| ||||||||| | |||| |||| |||||||||||||| ||||||    
T  23645523 cctcatttcctttgtaaaattttggttgtcacaaaagttgttacatatatgtatgttcaaataacataactct 23645595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 37274992 - 37274920
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||| ||||| ||||||||  |||| ||||||||| |||||| || |||||||||||||||||||||||    
T  37274992 cctcatttcctttgcaaaattttgattgtcacaaaagttgtcacatgtaaggatgttcaaataacacaactct 37274920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 45333823 - 45333891
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaa 69  Q
    |||||||| ||||||||||||||  |||| |||||| ||||||||| ||| ||||||||||||||||||    
T  45333823 cctcatttcctttgtaaaattttaattgtcacaaaaattatcacatatatagatgttcaaataacacaa 45333891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 52576261 - 52576186
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatgga-tgttcaaataacacaactctaa 75  Q
    |||||||| |||||||||||||| ||||| ||||||||| |||| | |||| | ||||||||||||||||||||||    
T  52576261 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacctatatgaattgttcaaataacacaactctaa 52576186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 3851270 - 3851335
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataaca 66  Q
    |||||||| |||| ||||||||| ||||| | ||||||| |||||| |||||||||||||||||||    
T  3851270 cctcatttcctttataaaattttggttgtcataaaagttgtcacatatatggatgttcaaataaca 3851335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 30735252 - 30735179
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactcta 74  Q
    |||||||| |||| |||||||||  |||| |||||| |||||||||  |||||| |||||||||||||||||||    
T  30735252 cctcatttactttataaaattttgattgtcacaaaaattatcacatacatggatattcaaataacacaactcta 30735179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 8350142 - 8350087
Alignment:
Q  17 aaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    ||||||| ||||| || |||||| |||||| |||||||||||||||||||||||||    
T  8350142 aaattttggttgtcacgaaagttgtcacatatatggatgttcaaataacacaactc 8350087  T

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Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 15470015 - 15469945
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||| |||| |||||||||  |||| |||||| ||||||||| |||| ||||||||||||||||||||    
T  15470015 cctcatttcctttataaaattttaattgtcacaaaa-ttatcacatatatgaatgttcaaataacacaactc 15469945  T

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Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 30570642 - 30570713
Alignment:
Q  7 tttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactctaaaaa 78  Q
    |||||||||||||||||  ||||| ||||| |||||| ||  ||| ||||||||||||||||||| ||||||    
T  30570642 tttctttgtaaaattttgattgtttcaaaaattatcatataaatgaatgttcaaataacacaactttaaaaa 30570713  T

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Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 37685441 - 37685512
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    ||||||||  |||||||||||||  |||| |||||| ||||||||| |||| |||||||||||||| |||||    
T  37685441 cctcatttcttttgtaaaattttaattgtcacaaaaattatcacatgtatgaatgttcaaataacataactc 37685512  T

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Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 37700077 - 37700006
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    ||||||||  |||||||||||||  |||| |||||| ||||||||| |||| |||||||||||||| |||||    
T  37700077 cctcatttcttttgtaaaattttaattgtcacaaaaattatcacatgtatgaatgttcaaataacataactc 37700006  T

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Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 43775319 - 43775386
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaa 69  Q
    ||||||||||||||||||||||  |||| | ||||||| |||||| |||| || ||||||||||||||    
T  43775319 ctcattttctttgtaaaattttgattgtcataaaagttgtcacatatatgaatattcaaataacacaa 43775386  T

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Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 50149060 - 50149130
Alignment:
Q  3 tcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||||||||||||||||  ||||| |||||||| ||| ||  |  ||||||||||||||||||||||    
T  50149060 tcattttctttgtaaaattttgattgttgcaaaagttgtcatataaaatgatgttcaaataacacaactct 50149130  T

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Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 31827064 - 31827136
Alignment:
Q  2 ctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactcta 74  Q
    |||||||| ||||||||||||| |||||  |||||||| |||  |  || |||||||||||||||||||||||    
T  31827064 ctcattttttttgtaaaattttggttgtatcaaaagttgtcatctaaatagatgttcaaataacacaactcta 31827136  T

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Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 44914531 - 44914459
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaag-ttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||| ||||||||||||||  ||||  |||||  || |||||| |||||||||||||||||||||||||    
T  44914531 cctcatttcctttgtaaaattttgattgtcgcaaaaaattgtcacatatatggatgttcaaataacacaactc 44914459  T

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Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 46907307 - 46907379
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||||||||| |||||||||  ||||  |||||||| ||  ||  |||||||||||||||||||||||||    
T  46907307 cctcattttctttataaaattttgattgtctcaaaagttgtcgtataaatggatgttcaaataacacaactct 46907379  T

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Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 30467487 - 30467420
Alignment:
Q  6 ttttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||||||||| ||| ||||| ||||||||| ||| ||   | ||||||||||||||||||||||    
T  30467487 ttttctttgtaaaactttagttgtcacaaaagttgtcatataattagatgttcaaataacacaactct 30467420  T

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Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 40861217 - 40861154
Alignment:
Q  5 attttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacaca 68  Q
    |||| |||| ||||||||| ||||| |||||||||  ||||| ||| |||||||||||||||||    
T  40861217 atttcctttataaaattttagttgtcacaaaagttgacacatatatagatgttcaaataacaca 40861154  T

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Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 18434909 - 18434979
Alignment:
Q  3 tcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||||||| |||||||| ||||| ||||||||| |||  |  || ||| ||||||||||||||||||    
T  18434909 tcattttctttgcaaaattttggttgtcacaaaagttgtcatctaaatagattttcaaataacacaactct 18434979  T

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Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 41677260 - 41677223
Alignment:
Q  36 agttatcacatttatggatgttcaaataacacaactct 73  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  41677260 agttgtcacatatatggatgttcaaataacacaactct 41677223  T

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Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 49647096 - 49647035
Alignment:
Q  15 taaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactctaaa 76  Q
    ||||||||| |||||| |||||||| ||| ||  ||| |||||||||||||| |||||||||    
T  49647096 taaaattttagttgtttcaaaagttgtcatataaatgaatgttcaaataacataactctaaa 49647035  T

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Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 51718583 - 51718517
Alignment:
Q  3 tcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||| ||||||||| |||| ||| | ||||||||| ||||||    |||||||||||||||||||||||    
T  51718583 tcatttcctttgtaaagttttagttatcacaaaagttgtcacat----ggatgttcaaataacacaactct 51718517  T

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Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 9566915 - 9566847
Alignment:
Q  5 attttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||| ||||||||||| |||||  |||||||| ||| ||   || |||||||||||||||||||||    
T  9566915 attttctatgtaaaattttggttgtctcaaaagttgtcatataattgaatgttcaaataacacaactct 9566847  T

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Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 18512302 - 18512230
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    ||||||||||||| ||||||||| |||||   |||| |||||| ||  || |||||| |||||||||||||||    
T  18512302 cctcattttctttataaaattttagttgtcttaaaaattatcatataaattgatgttgaaataacacaactct 18512230  T

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Target: scaffold0056 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 76578 - 76506
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||| |||||||||||||| ||||| ||||||||| |||||| |||||||||| |||||||||||||||    
T  76578 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttaaaataacacaactct 76506  T

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Target: scaffold0519 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 11894 - 11967
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactcta 74  Q
    ||||||||||||||||||||||| || || ||||||||| ||| |||||| ||||||||||||| |||||||||    
T  11894 cctcattttctttgtaaaattttggtcgtcacaaaagttgtcatatttatagatgttcaaataatacaactcta 11967  T

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Target: scaffold0199 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 8780 - 8852
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactct 73  Q
    |||||||| |||||||||||||| ||||| | ||||||| ||| || ||||||||||||||||||||||||||    
T  8780 cctcatttcctttgtaaaattttggttgtcataaaagttgtcagatatatggatgttcaaataacacaactct 8852  T

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Target: scaffold0098 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 49407 - 49478
Alignment:
Q  1 cctcattttctttgtaaaatttttgttgttacaaaagttatcacatttatggatgttcaaataacacaactc 72  Q
    |||||||| |||||||||||||| ||| | ||||||||| |||||| ||||||||||||||||||| |||||    
T  49407 cctcatttcctttgtaaaattttggttatcacaaaagttgtcacatatatggatgttcaaataacataactc 49478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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