View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10396_low_23 (Length: 250)
Name: NF10396_low_23
Description: NF10396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10396_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 41116896 - 41117132
Alignment:
| Q |
1 |
catcatgataaatagaggaaagaggaatgtccttcccagttgaatctagcagacctactgcaataggaatgaacatgggttccttaactgactgccctgg |
100 |
Q |
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| T |
41116896 |
catcatgataaatagaggaaagaggaatgtccttcccagttgaatctagcagacctactgcaataggaatgaacatgggttccttaactgactgccctgg |
41116995 |
T |
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| Q |
101 |
tgttggtggtatctcttgactgcaaaaatgtcccccatcaaacatgttatcaactataaataatcaaaaatagaagtcaaaatttggttacgttcaaccc |
200 |
Q |
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| T |
41116996 |
agttggtggtatctcttgactgcaaaaatgt-ccccatcaaacatgttatcaactataaataatcaaaaatagaagtcaaaatttggttacgttcaaccc |
41117094 |
T |
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| Q |
201 |
aatcagaaagaaatgaaaagtaaaagtttgtatgccta |
238 |
Q |
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| T |
41117095 |
aatcagaaagaaatgaaaagttaaagtttgtatgccta |
41117132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 3 - 238
Target Start/End: Original strand, 41104692 - 41104931
Alignment:
| Q |
3 |
tcatgataaatagaggaaagaggaatgtccttcccagttgaatctagcagacctactgcaataggaatgaacatgggttccttaactgactgccctggtg |
102 |
Q |
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| T |
41104692 |
tcatggtaaatagaggaaagaggaatgtccttgccagttgaatcaagcaaacctactgcaataggaataaacatgggttccttaactgactgccctggag |
41104791 |
T |
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| Q |
103 |
ttggtggtatctcttgactgcaaaaatgtcccccatcaaacatgttatc----aactataaataatcaaaaat-agaagtcaaaatttggttacgttcaa |
197 |
Q |
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| T |
41104792 |
ttggcgggatctcttgactgcaaaaatgt-cgccatcaaacatgttaacggagataaataaataatcataaatcagaagtcaaaatttaatcacctttaa |
41104890 |
T |
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| Q |
198 |
cccaatcagaaagaaatgaaaagtaaaagtttgtatgccta |
238 |
Q |
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| T |
41104891 |
cccaatcagagagaaataaaaagttgaagtttgtataccta |
41104931 |
T |
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