View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10396_low_3 (Length: 644)
Name: NF10396_low_3
Description: NF10396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10396_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 14 - 473
Target Start/End: Complemental strand, 1023162 - 1022714
Alignment:
| Q |
14 |
agggaagagaagaagctcccgcaactatagccttgtgaatatacttggcccgtaatccatccactcggcctactcgacccattccttacgactcagcatt |
113 |
Q |
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| T |
1023162 |
agggaagagaagaagctcccgcaactatagccttgtgaatatacttggcccgtaatccatccactcg---------acccattccttacaactcagcatt |
1023072 |
T |
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| Q |
114 |
gaatcatatatatagtcttgcccgtgtatcgcggtgagttaagcaaaatcacggcaaatcactataattttgcaaaagctacactttgtaacttcaagaa |
213 |
Q |
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| T |
1023071 |
gaatcatatatatagtcttgcccgtgtatcgcggtgagttaagcaaaatcatggcaaatcactataattttgcaaaagctacactttgtaacttcaacaa |
1022972 |
T |
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| Q |
214 |
aattatgatgtcaaagtgattttgtcgaactcacactgatatcagacatgcccaaaatcttaannnnnnnnnnnacttctaaacaccttaagcaggaaac |
313 |
Q |
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| T |
1022971 |
aattatgatgtcaaagtgattttgtcgaactcacactgatatcagacatgcacaaaatcttaattttttttt--acttctaaacaccttaagcaggaaac |
1022874 |
T |
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| Q |
314 |
atcatcaataaaggtcctcaaaaaataatgaagaagtgtttacagttacattaaacaatgcaccgaaagtgactgattctgtgattcaaagtcaagatac |
413 |
Q |
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| T |
1022873 |
atcatcaataaaggtcctcaaaaaataatgaagaagtgtttacagttacattaaacaatgcaccgaaagtgactgattctgtgattcaaagtcaagatac |
1022774 |
T |
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| Q |
414 |
catcaattattagtactatatgttcccactacgctacccgtacaagacctttacattgtt |
473 |
Q |
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| T |
1022773 |
catcaattattagtactatatgttcccactacgctacccgtacaagacctttacattgtt |
1022714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 537 - 628
Target Start/End: Complemental strand, 1022667 - 1022576
Alignment:
| Q |
537 |
ttgattgagttaacgacgaaaacgaaaacgaaaactcaccttcacttcctgaaagagtttgttttcccatgccaaaagccggtccaaagttg |
628 |
Q |
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| T |
1022667 |
ttgattgagttaacgacgaaaacgaaaacgaaaactcaccttcacttcctgaaagagtttgttttcccatgccaaaagccggtccaaagttg |
1022576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 3643723 - 3643781
Alignment:
| Q |
181 |
ttttgcaaaagctacactttgtaacttcaagaaaattatgatgtcaaagtgattttgtc |
239 |
Q |
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| T |
3643723 |
ttttgcaaaagctacactttgtagcttcaataaaatcatggtgtcactgtgattttgtc |
3643781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 158 - 242
Target Start/End: Complemental strand, 34404225 - 34404141
Alignment:
| Q |
158 |
aaaatcacggcaaatcactataattttgcaaaagctacactttgtaacttcaagaaaattatgatgtcaaagtgattttgtcgaa |
242 |
Q |
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| T |
34404225 |
aaaatcatggcaagtcaccgtaattttgcaaaagctacacttcgtagcttcaacaaaagcacggtgtcaccgtgattttgtcgaa |
34404141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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