View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10396_low_8 (Length: 422)
Name: NF10396_low_8
Description: NF10396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10396_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 20 - 412
Target Start/End: Complemental strand, 44784478 - 44784086
Alignment:
| Q |
20 |
gagatcagtgaagaattacttggagaaaagaggaaaaacagcatcaacgttagatgcattgcctcctaagtttttggaacatctaatctgtcatggcctg |
119 |
Q |
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| T |
44784478 |
gagatcagtgaagaattacttggagaaaagaggaaaaacagcatcaacgttagatgcattgcctcctaagtttttggaacatctaatctgtcatggcctg |
44784379 |
T |
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| Q |
120 |
cgcctggatctcttacaacctggccgtattgtcttctcaatgaagatacctccacgtttactcgttcgtatatatcatatcatactctcttcaattttct |
219 |
Q |
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| T |
44784378 |
cgcctggatctcttacaacctggctgtattgtcttctcaatgaagatacctccacgtttactcgttcgtatatatcatatcatactctcttcaattttct |
44784279 |
T |
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| Q |
220 |
tccctttctcatataataacactagttttgttcttcttgatttacctaattttatgtattaactcgcagaattcaggtaagtacttgcaaggtggtgtca |
319 |
Q |
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| T |
44784278 |
tccctttctcatataataacactagttttgttcttcttgattcacctaattttatgcattaactcgcagaattcaggtaagtacttgcaaggtggtgtca |
44784179 |
T |
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| Q |
320 |
ttgctagtctggtggatatggtaggcggagttgcaattcccaccggtggagtttctgtcgagatcaacgtctcatgcttggatgctgcctatg |
412 |
Q |
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| T |
44784178 |
ttgctagtctggtggatatggtaggcggagttgcaattcccaccggtggagtttctgtcgagatcaacgtctcatgcttggatgctgcctatg |
44784086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 189
Target Start/End: Complemental strand, 44797972 - 44797855
Alignment:
| Q |
72 |
gatgcattgcctcctaagtttttggaacatctaatctgtcatggcctgcgcctggatctcttacaacctggccgtattgtcttctcaatgaagatacctc |
171 |
Q |
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| T |
44797972 |
gatgaatttcctccaaagtttttgcaacatctaatcttgcgcgccctgcgattggatctcattgaacctggtcgtgtcgtcttctcaatgaacatacccc |
44797873 |
T |
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| Q |
172 |
cacgtttactcgttcgta |
189 |
Q |
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| T |
44797872 |
cacgtttactcgttcgta |
44797855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 44793020 - 44792966
Alignment:
| Q |
136 |
aacctggccgtattgtcttctcaatgaagatacctccacgtttactcgttcgtat |
190 |
Q |
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| T |
44793020 |
aacctggtcgtgtcgtcttctcaatgaacatacctccacgtttactcgttcgtat |
44792966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 348
Target Start/End: Complemental strand, 44797790 - 44797719
Alignment:
| Q |
277 |
attaactcgcagaattcaggtaagtacttgcaaggtggtgtcattgctagtctggtggatatggtaggcgga |
348 |
Q |
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| T |
44797790 |
attaattcgcagaattcaggtaagtacttgcacggtggtgctatcactactctggtggatatcgcaggcgga |
44797719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 359
Target Start/End: Complemental strand, 44801184 - 44801102
Alignment:
| Q |
277 |
attaactcgcagaattcaggtaagtacttgcaaggtggtgtcattgctagtctggtggatatggtaggcggagttgcaattcc |
359 |
Q |
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| T |
44801184 |
attaacacgcagaattcaggtaagcacttgcacgttggtgctattgttactctggtggatgtggtaggagcaattgcaattcc |
44801102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 189
Target Start/End: Complemental strand, 44801286 - 44801250
Alignment:
| Q |
153 |
ttctcaatgaagatacctccacgtttactcgttcgta |
189 |
Q |
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| T |
44801286 |
ttctcaatgaacatacctccacgtttactcgttcgta |
44801250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 367 - 412
Target Start/End: Complemental strand, 44786977 - 44786932
Alignment:
| Q |
367 |
ggagtttctgtcgagatcaacgtctcatgcttggatgctgcctatg |
412 |
Q |
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| T |
44786977 |
ggagtttcagtcgagatcaatgtatcatgcttggatgctgcatatg |
44786932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 44787201 - 44787149
Alignment:
| Q |
138 |
cctggccgtattgtcttctcaatgaagatacctccacgtttactcgttcgtat |
190 |
Q |
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| T |
44787201 |
cctggccgtatcgttttctcaatgaagatacctcccaatttacttgttcgtat |
44787149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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