View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10396_low_9 (Length: 418)

Name: NF10396_low_9
Description: NF10396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10396_low_9
NF10396_low_9
[»] chr5 (4 HSPs)
chr5 (1-400)||(24400976-24401374)
chr5 (191-400)||(24409372-24409581)
chr5 (129-161)||(8297853-8297885)
chr5 (125-161)||(26405214-26405250)
[»] chr3 (3 HSPs)
chr3 (194-364)||(32772142-32772312)
chr3 (125-161)||(4171123-4171159)
chr3 (125-161)||(50518755-50518791)
[»] chr1 (2 HSPs)
chr1 (126-161)||(7451927-7451962)
chr1 (126-161)||(31290687-31290722)
[»] chr7 (2 HSPs)
chr7 (124-161)||(33719343-33719380)
chr7 (125-161)||(6726085-6726121)
[»] scaffold0050 (1 HSPs)
scaffold0050 (125-161)||(37086-37122)
[»] chr6 (2 HSPs)
chr6 (125-161)||(3880278-3880314)
chr6 (125-161)||(20701463-20701499)
[»] chr4 (1 HSPs)
chr4 (125-161)||(42719535-42719571)
[»] chr2 (1 HSPs)
chr2 (125-161)||(13337629-13337665)


Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 24400976 - 24401374
Alignment:
Q  1 gtgtgagtggttgttggttccttatggcatgtgtgtaaaataaacgtgatcaacaaccagcaactaagggcactttagcaaataagcataagttggtaaa 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24400976 gtgtaagtggttgttggttccttatggcatgtgtgtaaaataaacgtgatcaacaaccagcaactaagggcactttagcaaataagcataagttggtaaa 24401075  T
Q  101 tatcctgataacaataaaaatgagtttgtttgtattctcagtctcaccggtctctgttcgtattcctgatgaaatcatgatattttattttatagatact 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24401076 tatc-tgataacaataaaaatgagtttgtttgtattctcagtctcaccggtctctgttcgtattcttgatgaaatcatgatattttattttatagatact 24401174  T
Q  201 gagcaatggaaaatataaggctgtattgcacagaacaacagtgaacaaagatgagacaagaatgtcgtggccagtgttcatagagccaaagccagaacat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24401175 gagcaatggaaaatataaggctgtattgcacagaacaacagtgaacaaagatgagacaagaatgtcgtggccagtgttcatagagccaaagccagaacat 24401274  T
Q  301 gaaattggtcctcatccaaagttgattaaccaagagaatccaccaaagtttaagaccaagaaatttgaggattatctttattgtaagcttaataagatcc 400  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24401275 gaaattggtcctcatccaaagttggttaaccaagagaatccaccaaagtataagaccaagaaatttgaggattatctttattgtaagcttaataagatcc 24401374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 191 - 400
Target Start/End: Original strand, 24409372 - 24409581
Alignment:
Q  191 tatagatactgagcaatggaaaatataaggctgtattgcacagaacaacagtgaacaaagatgagacaagaatgtcgtggccagtgttcatagagccaaa 290  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| || ||    
T  24409372 tatagatactaagcaatgggaaatataaggctgtattgcacagaacaactgtaaacaaagatgagacaagaatgtcgtggccagtgttcatagaacccaa 24409471  T
Q  291 gccagaacatgaaattggtcctcatccaaagttgattaaccaagagaatccaccaaagtttaagaccaagaaatttgaggattatctttattgtaagctt 390  Q
    ||||||| | ||| |||||||||| ||||||||  |||||||||||||||| |||||||  || |||||||||| | ||||||||  ||| |||||||||    
T  24409472 gccagaaaacgaagttggtcctcacccaaagtttgttaaccaagagaatcctccaaagtacaaaaccaagaaatataaggattatgcttactgtaagctt 24409571  T
Q  391 aataagatcc 400  Q
    ||||||||||    
T  24409572 aataagatcc 24409581  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 8297853 - 8297885
Alignment:
Q  129 tttgtattctcagtctcaccggtctctgttcgt 161  Q
    |||||||||||||| ||||||||||||||||||    
T  8297853 tttgtattctcagtttcaccggtctctgttcgt 8297885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 26405250 - 26405214
Alignment:
Q  125 tttgtttgtattctcagtctcaccggtctctgttcgt 161  Q
    |||||||||||||||||| |||||||||| |||||||    
T  26405250 tttgtttgtattctcagtttcaccggtctttgttcgt 26405214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 194 - 364
Target Start/End: Original strand, 32772142 - 32772312
Alignment:
Q  194 agatactgagcaatggaaaatataaggctgtattgcacagaacaacagtgaacaaagatgagacaagaatgtcgtggccagtgttcatagagccaaagcc 293  Q
    ||||| |||||||||||||||| |||||| |||| |||||||||||||||| ||||||||  |||||||| || ||||||||||||||||| ||  | ||    
T  32772142 agataatgagcaatggaaaatacaaggctatattacacagaacaacagtgagcaaagatgcaacaagaatttcttggccagtgttcatagaaccgcaacc 32772241  T
Q  294 agaacatgaaattggtcctcatccaaagttgattaaccaagagaatccaccaaagtttaagaccaagaaat 364  Q
    ||| || ||| |||| ||||| |||||  || |||||||||| || |||||||| || |||||||||||||    
T  32772242 agagcaagaagttgggcctcacccaaaactggttaaccaagacaacccaccaaaattcaagaccaagaaat 32772312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 4171123 - 4171159
Alignment:
Q  125 tttgtttgtattctcagtctcaccggtctctgttcgt 161  Q
    |||||||||||||||||| ||||||||||||||||||    
T  4171123 tttgtttgtattctcagtttcaccggtctctgttcgt 4171159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 50518791 - 50518755
Alignment:
Q  125 tttgtttgtattctcagtctcaccggtctctgttcgt 161  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  50518791 tttgtttgtattctcagtttcaccagtctctgttcgt 50518755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 161
Target Start/End: Complemental strand, 7451962 - 7451927
Alignment:
Q  126 ttgtttgtattctcagtctcaccggtctctgttcgt 161  Q
    ||||||||||||||||| ||||||||||||||||||    
T  7451962 ttgtttgtattctcagtttcaccggtctctgttcgt 7451927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 161
Target Start/End: Complemental strand, 31290722 - 31290687
Alignment:
Q  126 ttgtttgtattctcagtctcaccggtctctgttcgt 161  Q
    ||||||||||||||||||||||| ||||||||||||    
T  31290722 ttgtttgtattctcagtctcaccagtctctgttcgt 31290687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 33719343 - 33719380
Alignment:
Q  124 gtttgtttgtattctcagtctcaccggtctctgttcgt 161  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  33719343 gtttgtttgtattctcagtttcaccgatctctgttcgt 33719380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 6726121 - 6726085
Alignment:
Q  125 tttgtttgtattctcagtctcaccggtctctgttcgt 161  Q
    |||||||||||||||||| |||||| |||||||||||    
T  6726121 tttgtttgtattctcagtttcaccgatctctgttcgt 6726085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 37086 - 37122
Alignment:
Q  125 tttgtttgtattctcagtctcaccggtctctgttcgt 161  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  37086 tttgtttgtattatcagtttcaccggtctctgttcgt 37122  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 3880314 - 3880278
Alignment:
Q  125 tttgtttgtattctcagtctcaccggtctctgttcgt 161  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  3880314 tttgtttgtattttcagtttcaccggtctctgttcgt 3880278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 20701499 - 20701463
Alignment:
Q  125 tttgtttgtattctcagtctcaccggtctctgttcgt 161  Q
    |||||||||||||||||| |||||| |||||||||||    
T  20701499 tttgtttgtattctcagtttcaccgatctctgttcgt 20701463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 42719535 - 42719571
Alignment:
Q  125 tttgtttgtattctcagtctcaccggtctctgttcgt 161  Q
    |||||||||||||||||| |||||||||||| |||||    
T  42719535 tttgtttgtattctcagtttcaccggtctctattcgt 42719571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 13337629 - 13337665
Alignment:
Q  125 tttgtttgtattctcagtctcaccggtctctgttcgt 161  Q
    ||||||||||||||| || ||||||||||||||||||    
T  13337629 tttgtttgtattctctgtttcaccggtctctgttcgt 13337665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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