View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10397_high_5 (Length: 253)
Name: NF10397_high_5
Description: NF10397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10397_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 36161735 - 36161972
Alignment:
| Q |
1 |
aatatgttggctaaagccacagacaacatgaatgttgaaagatgattacaatttctattattgttagttagttaaaagtggttgatttgttggttcttga |
100 |
Q |
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| T |
36161735 |
aatatgttggctaaagccatacacaacatgaatgttgaaagatgattacaatttctattattgttagttagttaaaagtggttggtttgttggttcttga |
36161834 |
T |
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| Q |
101 |
gttagttacaaattgaatgagcctaataattagatcgatgtgggactcaacaagatgcatgccaatatacaaggatattttcaatattgttcttctttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||| |
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| T |
36161835 |
gttagttacaaattgaatgagcctaataattagatcgatgtgggactcaacaagatgcatgccaatatacaaggatattttcaatagtattcttc--tgt |
36161932 |
T |
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| Q |
201 |
gtataaagagagtgtgtgtgcaaaccac-attgttcttaa |
239 |
Q |
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| T |
36161933 |
gtataaagagagtgtgtgtgcaaaccactattgttcttaa |
36161972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 36152916 - 36153144
Alignment:
| Q |
1 |
aatatgttggctaaagccacagacaacatgaatgttgaaagatgattacaatttctattattgttagttagt---taaaagtggttgatttgttggttct |
97 |
Q |
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|||| ||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||| ||||| |
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| T |
36152916 |
aatacgttggttaaagccacaaacaacatgaatgttgaaagatgattgcaatttctattattgttagttagtagttaaaagcggttgatttgtcagttct |
36153015 |
T |
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| Q |
98 |
tgagtta----gttacaaattgaatgagcctaataattagatcgatgtgggactcaacaagatgcatgccaatatacaag-gatattttcaatattgttc |
192 |
Q |
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||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||| | ||| |
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| T |
36153016 |
tgagttacttagttacaaattgaatgagcctaataattagattgatgtgggattcaacaagatgcatgccaatatacaagagatattttcaataatattc |
36153115 |
T |
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| Q |
193 |
ttctttgtgtataaagagagtgtgtgtgc |
221 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
36153116 |
ttctttgtgtataaagagagtgtgtgtgc |
36153144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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