View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10397_low_2 (Length: 453)
Name: NF10397_low_2
Description: NF10397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10397_low_2 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 7 - 453
Target Start/End: Original strand, 2002900 - 2003345
Alignment:
| Q |
7 |
ggagcagagaggagagagcgatgaatgggttcctcctttgttgtgtgattgattattgggctgggcctgtaaaagtaacaattttgtaaagaattgttat |
106 |
Q |
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| T |
2002900 |
ggagcagagaggagagagcgatgaatgggttcctcctttgttgtgtgattgattattgggctgggcctgtaaaagtaacaattttgttaagaattgttat |
2002999 |
T |
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| Q |
107 |
atgtgccccataaattgcttaacttgtgaaataagccagtttagaagatgcgttctgatccnnnnnnntgtttatcggatcgtaactcatgataggtttt |
206 |
Q |
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| T |
2003000 |
atgtgccgcataaattgcttaacttgtgaaataagccggtttagaagatgcgttctgatccaaaaaa-tgtttatcggatcgtaactcatgataggtttt |
2003098 |
T |
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| Q |
207 |
atacgattgagagttatgatccgataaattcaagggaattttgagaaatccacaaggtgtatagatcatttatttttctacttgttatagttttggttcc |
306 |
Q |
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| T |
2003099 |
atacgattgagagttatgatccgataaattcaagggaattttgagaaatccacaaggtgtatagatcatttatttttctacttgttatagttttggttcc |
2003198 |
T |
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| Q |
307 |
tctattttaagttattcatgtaattaaccctatgttttaaaatcactcagattgttcctgtgagtttagcttagtcgattcatggatcggatactgattt |
406 |
Q |
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| T |
2003199 |
tctattttaagttattcatgtaattaaccctatgttttaaaaccactcagattgttcctgtgagtttagcttagtcgattcatggatcggatactgagtt |
2003298 |
T |
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| Q |
407 |
ttcgagnnnnnnntagcttagctggtataggcattgcataatatatg |
453 |
Q |
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| T |
2003299 |
ttcgaaaaaaaaatagtttagttggtataggcattgcataatatatg |
2003345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 7 - 292
Target Start/End: Original strand, 2008936 - 2009219
Alignment:
| Q |
7 |
ggagcagagaggagagagcgatgaatgggttcctcctttgttgtgtgattgattattgggctgggcctgtaaaagtaacaattttg--taaagaattgtt |
104 |
Q |
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| T |
2008936 |
ggagcagagaggagagagcgatgaatgggat--tcctttgttgtgtgattgattattgggctgggcctg-aaaattaacaatttttaatatagaattatt |
2009032 |
T |
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| Q |
105 |
atatgtgccccataaattgcttaacttgtgaaataagccagtttagaagatgcgttctgatccnnnnnnntgtttatcggatcgtaactcatgataggtt |
204 |
Q |
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| T |
2009033 |
atatgtgccccataaattgcttaattcgtaaaataagccgatttaaaagttgcgttctgat--taaaaaatgttcatcggatcgtaacttatgatagatt |
2009130 |
T |
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| Q |
205 |
ttatacgattgagagttatgatccgataaa-ttcaagggaattttgagaaatccacaaggtgtatagatcatttatttttctacttgtt |
292 |
Q |
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| T |
2009131 |
ttatacaattgagaattacgttctgataaatttcaacggacttttgaaaaatccacgaggtgcattgattttttttttttctacttgtt |
2009219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 359
Target Start/End: Original strand, 2009290 - 2009358
Alignment:
| Q |
291 |
ttatagttttggttcctctattttaagttattcatgtaattaaccctatgttttaaaatcactcagatt |
359 |
Q |
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| T |
2009290 |
ttatagttttgatccctctattttaacttattcatgtaattaaccctctattttaaaaccactgagatt |
2009358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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