View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10397_low_3 (Length: 336)
Name: NF10397_low_3
Description: NF10397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10397_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 39524164 - 39523846
Alignment:
| Q |
1 |
taagttaatgtgacccatttatgaaataataaagattttatgttaactcctgttaatgtaaaatctttttgcacatgcatcaaatcaaatctcatcatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39524164 |
taagttaatgtgacccatttatgaaataataaagattttatgttaactcctgttaatgtaaaatctttttgcacatgcatcaaatcaaatctcatcatat |
39524065 |
T |
|
| Q |
101 |
actaaattcatatagacaaaaaactaagataaaatgtataaggtcgtgtggatagctatgattttatgtcaagcttttagtgtttgatttgctgtgactt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39524064 |
actaaattcatatagacaaaaaactaagataaaatgtataaggtcgtgtggatagctatgattttatgtcaagcttttagtgtttgatttgctgtgactt |
39523965 |
T |
|
| Q |
201 |
acaatattgaaaacagaagagcaacttttctggaatcgaatgaggtagagcgcttatatcttctccatttgttactcggcaaatcatgtaacttttcagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39523964 |
acaatattgaaaacagaagagcaacttttctggaatcgaatgaggtagagcgcttatatcttctccatttgttactcggcaaatcatgtaacttttcagt |
39523865 |
T |
|
| Q |
301 |
gactggcttatctgttaat |
319 |
Q |
| |
|
||||||||||||||||||| |
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| T |
39523864 |
gactggcttatctgttaat |
39523846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 23260722 - 23260403
Alignment:
| Q |
1 |
taagttaatgtgacccatttatgaaataataaagattttatgttaactcctgttaatgtaaaatcttttt-gcacatgcatcaaatcaaatctcatcata |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||| ||||||||||| ||||||||||||| || |
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| T |
23260722 |
taagttaatgtgacccatttatgaaataatgaagattttatgttatctcccgttaatgtaaaatcttttttgcacatgcatcctatcaaatctcatcgta |
23260623 |
T |
|
| Q |
100 |
tactaaattcatatagacaaaaaactaagataaaatgtataaggtcgtgtggatagctatgattttatgtcaagcttttagtgtttgatttgctgtgact |
199 |
Q |
| |
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|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
23260622 |
tagtaaattcatatagacaaaatactaagataaaatgtataaggtcgtgtggatagctatgattttatgtcaagcttttagtgtttgatctgctgtaact |
23260523 |
T |
|
| Q |
200 |
tacaatattgaaaacagaagagcaacttttctggaatcgaatgaggtagagcgcttatatcttctccatttgttactcggcaaatcatgtaacttttcag |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
23260522 |
tacaatattgaaaacagaagagcaacttttctggaatcgaatgaggtagagcgcttgtatcttctccatttgttactcagcagatcatgtaacttttcag |
23260423 |
T |
|
| Q |
300 |
tgactggcttatctgttaat |
319 |
Q |
| |
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|||||||||||||||||||| |
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|
| T |
23260422 |
tgactggcttatctgttaat |
23260403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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