View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10397_low_7 (Length: 259)
Name: NF10397_low_7
Description: NF10397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10397_low_7 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0632 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 6 - 259
Target Start/End: Complemental strand, 957250 - 956997
Alignment:
| Q |
6 |
gtgatatacaatcttaactacagggtgagaaaacataccctaattaacaatggataaagataaatcaaccctggaagcagccgatatatagaatgtttat |
105 |
Q |
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| T |
957250 |
gtgatatacaatcttaactacagggtgagaaaacagaccctaattaacaatggataaagataattcaaccctggaagcagccgatatatagaatgtttat |
957151 |
T |
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| Q |
106 |
tattaacagaactagtccattttcatgaagatataaactagataactgatcaaattttttgtaagttgtagtgaaattaagctcatgaataaacgaaaaa |
205 |
Q |
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| T |
957150 |
tattaacagaactagtccattttcatgaagatataaactagataactgatcaaattttttgtaagttgtagtgaaattaagctcatgaataaacgaaaaa |
957051 |
T |
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| Q |
206 |
agaccttgaaacaggagtgaagaagagcctcaagttggagatggtggctgatgt |
259 |
Q |
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| T |
957050 |
agaccttgaaacaggagtgaagaagagcctcaagttggagatggtggctgatgt |
956997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0632 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0632
Description:
Target: scaffold0632; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 29 - 259
Target Start/End: Complemental strand, 2760 - 2525
Alignment:
| Q |
29 |
ggtgagaaaacataccctaattaacaatggataaagataaatcaaccctggaagcagccgatatatagaatgtttattattaacagaactagtccatttt |
128 |
Q |
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| T |
2760 |
ggtgagaaaacagaccctaactaacaatgggtaaagataaatcaaccctagaagcaggcgatatatagtatgtttattagttacagaactagtccatttt |
2661 |
T |
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| Q |
129 |
catgaagatataaactagataactgatcaaattttttgtaagttgtagtgaaattaagctcatg----aataaacg-aaaaaagaccttgaaacaggagt |
223 |
Q |
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| T |
2660 |
catgaagatatatactatataactgatcaaacgttttgtaagttgtagtgaaattaagctcatgaattaataaatgaaaaaaagaccttgaaacatgagt |
2561 |
T |
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| Q |
224 |
gaagaagagcctcaagttggagatggtggctgatgt |
259 |
Q |
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| T |
2560 |
gaagaagatcctcaagttggaaatggtggctgatgt |
2525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 117 - 259
Target Start/End: Complemental strand, 36486172 - 36486026
Alignment:
| Q |
117 |
ctagtccattttcatgaagatataaactagataactgatcaaattttttgtaagttgtagtgaaattaagctcatg----aataaacgaaaaaagacctt |
212 |
Q |
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| T |
36486172 |
ctagtccattttcatgaagatatatactatataactgatcaaacgttttgtaagttgtagtgaaattaagctcatgaattaataaatgaaaaaagacctt |
36486073 |
T |
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| Q |
213 |
gaaacaggagtgaagaagagcctcaagttggagatggtggctgatgt |
259 |
Q |
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| T |
36486072 |
gaaacatgagtgaagaagattctcaagttggagatggtggctgatgt |
36486026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 117 - 259
Target Start/End: Complemental strand, 28539524 - 28539378
Alignment:
| Q |
117 |
ctagtccattttcatgaagatataaactagataactgatcaaattttttgtaagttgtagtgaaattaagctcatg----aataaacgaaaaaagacctt |
212 |
Q |
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| T |
28539524 |
ctagtccattttcatgaagatatatactatataactgatcaaacgttttgtaagttgtagtgaaattaagctcatgaattaataaatgaaaaaagatctt |
28539425 |
T |
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| Q |
213 |
gaaacaggagtgaagaagagcctcaagttggagatggtggctgatgt |
259 |
Q |
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| T |
28539424 |
gaaacatgagtgaagaagattctcaagttggagatggtggctgatgt |
28539378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 117 - 259
Target Start/End: Original strand, 31600210 - 31600356
Alignment:
| Q |
117 |
ctagtccattttcatgaagatataaactagataactgatcaaattttttgtaagttgtagtgaaattaagctcatg----aataaacgaaaaaagacctt |
212 |
Q |
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|||||||||||||||||||||||| |||| ||||||||||||| || |||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
31600210 |
ctagtccattttcatgaagatatatactatataactgatcaaacgttctgtaagttgtagtgaaattaagctcatgaattaataaatgaaaaaagacctt |
31600309 |
T |
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| Q |
213 |
gaaacaggagtgaagaagagcctcaagttggagatggtggctgatgt |
259 |
Q |
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| T |
31600310 |
gaaacatgagtgaagaagattctcaagttggagatggtggctgatgt |
31600356 |
T |
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