View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10397_low_9 (Length: 250)
Name: NF10397_low_9
Description: NF10397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10397_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 7038958 - 7038716
Alignment:
| Q |
1 |
acaacaaagcaaaggaactgaacagtatttatatcgattgaagctttagtgaaggacaaacaaaaactgtgaataagattgaaaataaattggatttgtt |
100 |
Q |
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| T |
7038958 |
acaacaaagcaaaggaactgaacagtatttatatcgattgaagctttagtgaaggacaaacaaaaactgtgaataagattgaaaataaattggatttgtt |
7038859 |
T |
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| Q |
101 |
gattaaaaaaggtcatgatgattaacgattgnnnnnnngtgtacggaagaagaaggttacacgagagatgaaggaagagtctggattggaaatcgaagga |
200 |
Q |
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| T |
7038858 |
gattaaaaaaggtcatgatgattaacgattgaaaaaaagtgtacggaagaagaaggttacacgagagatgaaggaagagtctggattggaaatcgaagga |
7038759 |
T |
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| Q |
201 |
gggtaaagaaaataacatgcatgctgatgataagcctatgcta |
243 |
Q |
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| T |
7038758 |
gggtaaagaaaataacatgcatgctgatgataagcctatgcta |
7038716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 39466383 - 39466273
Alignment:
| Q |
1 |
acaacaaagcaaaggaactgaacagtatttatatcgattgaagctttagtgaaggacaaacaaaaactgtgaataa--gatt-gaaaataaattggattt |
97 |
Q |
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| T |
39466383 |
acaacaaagcaaaggaactgaacagtatttgtatcgattgaagctatagtaaaggacaaacaaaaactattaataagcgattaaaaaaaaaattggattt |
39466284 |
T |
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| Q |
98 |
gttgattaaaa |
108 |
Q |
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| T |
39466283 |
gttgattaaaa |
39466273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 38270193 - 38270259
Alignment:
| Q |
146 |
gaagaagaaggttacacgagagatgaaggaagagtctggattggaaatcgaaggagggtaaagaaaataa |
215 |
Q |
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| T |
38270193 |
gaagaagaaggttacacaaaagatggaggagg---ctgggttgggaatcgaaggagggtaaagaaaataa |
38270259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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