View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10398_1 (Length: 488)
Name: NF10398_1
Description: NF10398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10398_1 |
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Alignment Details
Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 131 - 254
Target Start/End: Original strand, 40103455 - 40103576
Alignment:
| Q |
131 |
aacctgtgaaggaggaggttgttgtcgttgcgagttgcttactgcggcgccgtaaggcggtgttttgccactccattgttgggggcctctccagggtttc |
230 |
Q |
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| T |
40103455 |
aacctgtgaaggaggaggttgttgtcgttgcgagttgcttactgcggcgccgtaaggtggtg--ttgccactccattgttgggggcctctccagggtttc |
40103552 |
T |
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| Q |
231 |
tgatgcggctttgtgcattttata |
254 |
Q |
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| T |
40103553 |
tgatgcggctttgtgcattttata |
40103576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 271 - 484
Target Start/End: Original strand, 40103622 - 40103829
Alignment:
| Q |
271 |
aaataaattatattaaaacatataattcgaaatcgagaggatttcgacccaagcccaggtaaaaatatttggacatgcaaacaaa-ctnnnnnnnntatt |
369 |
Q |
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| T |
40103622 |
aaataaattatattaaaatatataattcgaaatcgagaggattt--------gcccaagtaaaaatacttggacatacaaacaaaactaaaaaaaaaatt |
40103713 |
T |
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| Q |
370 |
aaaagagaagaagaattaaatgatattagttggtgtgactta-ttatttttgtctaattttgttgattttatgtgaacgtgttcaaataatattaattta |
468 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||| | ||||| |||||||||||||||||||| |||| ||||||| ||||||||||||||||| |
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| T |
40103714 |
aaaagagaagaaaaattaaatgatatcagttggtgtgactgaattattgttgtctaattttgttgatttcatgtcaacgtgtccaaataatattaattta |
40103813 |
T |
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| Q |
469 |
gatatgtatctatcaa |
484 |
Q |
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| T |
40103814 |
ggtatgtatctatcaa |
40103829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 8682744 - 8682843
Alignment:
| Q |
30 |
gtgatgacaacaaaacggccaatgaaggcggtggtaaaaatgcaggtggtggcacaaaagtagaggaagtgaagccagcaccacagccagtgaacgagca |
129 |
Q |
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| T |
8682744 |
gtgatgacaacaaaacggccaatgaaggcggtggtaaaaatgcaggtggtggctcaaaagtagaggaagtgaagccagcaccacagccagtgaaagagca |
8682843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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