View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10398_3 (Length: 345)
Name: NF10398_3
Description: NF10398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10398_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 40103327 - 40102983
Alignment:
| Q |
1 |
aactaaatcttgccacattccacaccattccctgttgccaatgcgcttctccactcgaactaaacaccgctaacatgtgtgtcaaatgtttacgctcaaa |
100 |
Q |
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| T |
40103327 |
aactaaatcttgccacattccacaccattccctgttgccaatgcgcatctccactcgaactaaacaccgctaacatgtgtgtcaaatgtttacgctcaaa |
40103228 |
T |
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| Q |
101 |
aaccaatatcacagaaggtttactcaagaaacttagactaacacattgcaccgaatgcgaatgctatttacaaccccccacttggatcaaactaatacca |
200 |
Q |
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| T |
40103227 |
aaccaatatcacagaaggtttactcaagaaacttagactaacacattgcaccgaatgcgaatgctatttacaaccccccacttggatcaaactaatacca |
40103128 |
T |
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| Q |
201 |
caatcaaaacagtttcttgcattttgtttgaagaaactagaacagaatatgaaattcaagagagttaggttagtacatgctgaaacccttccaactgaac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40103127 |
caatcaaaacagtttcttgcattttgtttgaagaaactagaacagaatatgaaattcaagagagttaggttagtacatgctgaaacccttccatctgaac |
40103028 |
T |
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| Q |
301 |
cccactcgaaaattatcaaaatcaaggtttttgttcagaaagagg |
345 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
40103027 |
ccgactcgaaaattatcaaaatcaaggtttttgttcagaaagagg |
40102983 |
T |
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