View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10398_5 (Length: 322)
Name: NF10398_5
Description: NF10398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10398_5 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 13449257 - 13448947
Alignment:
| Q |
1 |
ggaagatccacactggcgcgatgctccttaaagaacctattggggatttcattgagaatgatccaccggattgtatcatctccgactccacgtatccatg |
100 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13449257 |
ggaagatccatactggcgcgatgctccttaaagaacctattggggatttcattgagaatgatccaccggattgtatcatctccgactccacgtacccatg |
13449158 |
T |
|
| Q |
101 |
ggttaatgacttggccgataagtttcagatcccaaacatcacattcaatggattgtgcctttttgctgtctccctcgtgcagaccctcaaaacaaacaat |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
13449157 |
ggttaatgacttggccgataagtttcagatcccaaacatcacattcaatggattgtgcctttttgctgtctccctcgtggaaaccctcaaaacaaacaat |
13449058 |
T |
|
| Q |
201 |
ttacttatgtctcagacagattctgattcggattcaagttcctttgttgttccaaattttcctcatcatatcaccttgtgtggaaaaccaccaaaggtaa |
300 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
13449057 |
ttacttaagtctcagacagattctgattcggattcaagttcctttgttgttccaaattttcctcaccatatcaccttgtgtggaaaaccgccaaaggtaa |
13448958 |
T |
|
| Q |
301 |
tcggtatattc |
311 |
Q |
| |
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||||||||||| |
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| T |
13448957 |
tcggtatattc |
13448947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 57 - 302
Target Start/End: Complemental strand, 13455672 - 13455427
Alignment:
| Q |
57 |
aatgatccaccggattgtatcatctccgactccacgtatccatgggttaatgacttggccgataagtttcagatcccaaacatcacattcaatggattgt |
156 |
Q |
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|||||||| || |||||||||||||||||| | | || ||||||||||||||||||||| ||||||||||||| || ||||||||||| || ||| ||| |
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| T |
13455672 |
aatgatcccccagattgtatcatctccgacgctgcatacccatgggttaatgacttggcccataagtttcagattcctaacatcacatttaacggaatgt |
13455573 |
T |
|
| Q |
157 |
gcctttttgctgtctccctcgtgcagaccctcaaaacaaacaatttacttatgtctcagacagattctgattcggattcaagttcctttgttgttccaaa |
256 |
Q |
| |
|
|||||||||| |||||||| || |||||||||||||||||||||||||| ||| | ||| ||| |||||||||||||||| |||||||||||||||| |
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| T |
13455572 |
gcctttttgccgtctccctaatggagaccctcaaaacaaacaatttacttcattctgatacaaattttgattcggattcaagtacctttgttgttccaaa |
13455473 |
T |
|
| Q |
257 |
ttttcctcatcatatcaccttgtgtggaaaaccaccaaaggtaatc |
302 |
Q |
| |
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||||||||||||||||||||| |||| |||||| |||||| ||||| |
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| T |
13455472 |
ttttcctcatcatatcaccttatgtgaaaaaccgccaaagttaatc |
13455427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 13441094 - 13440794
Alignment:
| Q |
1 |
ggaagatccacactggcgcgatgctccttaaagaacctattggggatttcattgagaatgatccaccggattgtatcatctccgactccacgtatccatg |
100 |
Q |
| |
|
||||||||||| |||||| |||||||| | | | | |||| ||||||||| ||||| |||||||| ||||||||||||||||||||| | || ||||| |
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| T |
13441094 |
ggaagatccaccgtggcgcaatgctcctccatggatccattgaggatttcatggagaaagatccaccagattgtatcatctccgactccgcatacccatg |
13440995 |
T |
|
| Q |
101 |
ggttaatgacttggccgataagtttcagatcccaaacatcacattcaatggattgtgcctttttgctgtctccctcgtgcagaccctcaaaacaaacaat |
200 |
Q |
| |
|
|| |||||||||||| ||||| |||||||||||||| |||||||||||||||||| |||||| | ||||| |||||| | ||||| || ||||||| |
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| T |
13440994 |
ggctaatgacttggcgcataagcttcagatcccaaacctcacattcaatggattgtcactttttaccgtctctctcgtggaatccctccaagcaaacaac |
13440895 |
T |
|
| Q |
201 |
ttacttatgtctcagacagattctgattcggattcaagttcctttgttgttccaaattttcctcatcatatcaccttgtgtggaaaaccaccaaaggtaa |
300 |
Q |
| |
|
|||||| ||| | || ||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||| |||||||||| |
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| T |
13440894 |
ttacttcattctgatactaattctgatttggattcaagttcctttgttgttccaaattttcctcatcgtataaccttgtgcggaaaaccgccaaaggtaa |
13440795 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
|
| |
|
|
| T |
13440794 |
t |
13440794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 3416821 - 3417112
Alignment:
| Q |
1 |
ggaagatccacactggcgcgatgctccttaaagaacctattggggatttcattgagaatgatccaccggattgtatcatctccgactccacgtatccatg |
100 |
Q |
| |
|
|||||||| ||| |||||| |||||||| | ||| |||| |||||||||| | || |||||||| |||||||||||||||||||| | || ||||| |
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| T |
3416821 |
ggaagatcaacaatggcgcaatgctcctccatcgacccattgaggatttcattaaaaacgatccaccagattgtatcatctccgactctgcatacccatg |
3416920 |
T |
|
| Q |
101 |
ggttaatgacttggccgataagtttcagatcccaaacatcacattcaatggattgtgcctttttgctgtctccctcgtgcagaccctcaaaacaaacaat |
200 |
Q |
| |
|
|||||||||||||||| | ||| |||| ||||| || |||||| ||||| |||| | ||||| | |||| ||| || | |||| | |||||| ||| |
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| T |
3416921 |
ggttaatgacttggcccagaagcttcaaatccctaatttcacatacaatgttttgtccgtttttccagtcttgctcatggaatcccttagaacaaataat |
3417020 |
T |
|
| Q |
201 |
ttacttatgtctcagacagattctgattcggattcaagttcctttgttgttccaaattttcctcatcatatcaccttgtgtggaaaaccaccaaaggt |
298 |
Q |
| |
|
|||||| | || ||||||||||||||||||||||||| | | |||||||| ||||||| || ||||||| |||| | |||||||||||||| |
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|
| T |
3417021 |
ttactttt------tacggattctgattcggattcaagttcctatatcgttccaaactttcctcttcctatcaccatgtgcagtaaaccaccaaaggt |
3417112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 219 - 280
Target Start/End: Complemental strand, 12541361 - 12541300
Alignment:
| Q |
219 |
gattctgattcggattcaagttcctttgttgttccaaattttcctcatcatatcaccttgtg |
280 |
Q |
| |
|
||||||||||||||||||||||| | ||| ||||||||||||||||||| ||||||| |||| |
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| T |
12541361 |
gattctgattcggattcaagttcgtatgtcgttccaaattttcctcatcgtatcaccatgtg |
12541300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 28386231 - 28386099
Alignment:
| Q |
1 |
ggaagatccacactggcgcgatgctccttaaagaacctattggggatttcattgagaatgatccaccggattgtatcatctccgactccacgtatccatg |
100 |
Q |
| |
|
|||||||||| | |||||| |||||||| || ||| | ||||||||||| ||||||| |||||||||||||||| || | |||||| | | |||| |
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|
| T |
28386231 |
ggaagatccataatggcgcaatgctcctcaatgaagcggttggggatttcgttgagaagaatccaccggattgtattattgctgactccgcattctcatg |
28386132 |
T |
|
| Q |
101 |
ggttaatgacttggccgataagtttcagatccc |
133 |
Q |
| |
|
|| ||||||||||||| | ||| |||| ||||| |
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| T |
28386131 |
ggctaatgacttggcccacaagcttcaaatccc |
28386099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 296
Target Start/End: Original strand, 12482964 - 12483041
Alignment:
| Q |
219 |
gattctgattcggattcaagttcctttgttgttccaaattttcctcatcatatcaccttgtgtggaaaaccaccaaag |
296 |
Q |
| |
|
||||| |||| ||||||| ||| || |||||||||||||||||||| |||||||||||||| ||||||||||||| |
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|
| T |
12482964 |
gattccgatttggattcacattctttcgttgttccaaattttcctcaccatatcaccttgtgcacaaaaccaccaaag |
12483041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 277
Target Start/End: Original strand, 12589688 - 12589727
Alignment:
| Q |
238 |
gttcctttgttgttccaaattttcctcatcatatcacctt |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12589688 |
gttcctttgttgttccaaattttcctcatcgtatcacctt |
12589727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 285
Target Start/End: Complemental strand, 48966005 - 48965939
Alignment:
| Q |
219 |
gattctgattcggattcaagttcctttgttgttccaaattttcctcatcatatcaccttgtgtggaa |
285 |
Q |
| |
|
||||||||||| ||||| |||| |||||||||| |||||| ||||| | ||||||||||| ||||| |
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|
| T |
48966005 |
gattctgattcagattcgggttcatttgttgttcgaaatttacctcaccctatcaccttgtctggaa |
48965939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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