View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10398_8 (Length: 304)

Name: NF10398_8
Description: NF10398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10398_8
NF10398_8
[»] chr1 (15 HSPs)
chr1 (11-300)||(6852099-6852394)
chr1 (230-304)||(47216173-47216249)
chr1 (185-304)||(27930833-27930961)
chr1 (231-304)||(15357484-15357559)
chr1 (245-304)||(28044612-28044671)
chr1 (230-304)||(7307461-7307537)
chr1 (242-304)||(45738130-45738193)
chr1 (230-304)||(2275207-2275284)
chr1 (230-304)||(43320458-43320535)
chr1 (230-304)||(45559645-45559722)
chr1 (230-304)||(46683225-46683302)
chr1 (230-304)||(50143501-50143578)
chr1 (230-304)||(831383-831459)
chr1 (230-304)||(9997909-9997985)
chr1 (230-304)||(10012333-10012409)
[»] chr2 (6 HSPs)
chr2 (185-304)||(4437860-4437988)
chr2 (230-303)||(28167656-28167732)
chr2 (230-304)||(11796691-11796768)
chr2 (230-304)||(11942131-11942208)
chr2 (230-304)||(33146151-33146228)
chr2 (230-304)||(34830866-34830943)
[»] chr4 (8 HSPs)
chr4 (185-304)||(55068908-55069036)
chr4 (231-304)||(49702924-49702999)
chr4 (230-304)||(36422178-36422253)
chr4 (230-304)||(16192197-16192273)
chr4 (230-304)||(4950051-4950128)
chr4 (242-303)||(35666083-35666145)
chr4 (230-304)||(37709450-37709527)
chr4 (231-304)||(12268073-12268148)
[»] chr3 (8 HSPs)
chr3 (230-304)||(45241291-45241366)
chr3 (242-304)||(16067357-16067420)
chr3 (230-304)||(3090299-3090376)
chr3 (231-304)||(50383516-50383590)
chr3 (244-304)||(18364765-18364826)
chr3 (232-304)||(11345240-11345315)
chr3 (228-304)||(40036276-40036355)
chr3 (228-304)||(54403676-54403755)
[»] chr8 (7 HSPs)
chr8 (231-304)||(4855816-4855891)
chr8 (230-303)||(37266024-37266099)
chr8 (230-304)||(3940098-3940175)
chr8 (230-304)||(34925286-34925363)
chr8 (230-303)||(17496379-17496455)
chr8 (231-304)||(44746294-44746370)
chr8 (230-304)||(17564787-17564863)
[»] chr7 (6 HSPs)
chr7 (243-304)||(1573635-1573696)
chr7 (228-304)||(45941567-45941646)
chr7 (202-304)||(5227934-5228046)
chr7 (242-304)||(22711765-22711828)
chr7 (242-304)||(23742129-23742191)
chr7 (231-304)||(46011000-46011076)
[»] chr5 (5 HSPs)
chr5 (230-304)||(40956872-40956948)
chr5 (231-304)||(19500884-19500959)
chr5 (230-304)||(5138845-5138922)
chr5 (230-304)||(4876827-4876904)
chr5 (241-304)||(15144959-15145023)
[»] chr6 (2 HSPs)
chr6 (185-304)||(32114288-32114417)
chr6 (228-304)||(30461555-30461634)
[»] scaffold0695 (1 HSPs)
scaffold0695 (231-304)||(2341-2416)
[»] scaffold0712 (1 HSPs)
scaffold0712 (230-304)||(4200-4277)
[»] scaffold0709 (1 HSPs)
scaffold0709 (230-304)||(4220-4297)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 300
Target Start/End: Complemental strand, 6852394 - 6852099
Alignment:
Q  11 cagagaaagcttactgagtcactggataaacaagcttctggtgcggttgccggaatgactcacaacgcggcggcttgaggatagggcaacggtggaggcg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6852394 cagagaaagcttactgagtcactggataaacaagcttctggtgcggttgccggaatgactcacaacgcggcggcttgaggatagggcaagggtggaggcg 6852295  T
Q  111 cgtgagtgtgaaagtggctgcgtgttatttgttaa---tattatttagagtaaattacactc---tcctcatgcaattacacactcctcttccctgtaaa 204  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||   ||||| ||||||||||||||       ||| ||||    
T  6852294 cgtgagtgtgaaagtggctgcgtgttatttgttaatagtattatttagagtaaattacactctcatcctcgtgcaattacacact-------cctttaaa 6852202  T
Q  205 gtaaaatttatactccattccctta-------cttgaattacaaccctcccttaatcattaaatatgatttacagttgaatctatttaacataaattaat 297  Q
    ||||||||||||| ||| |||||||        ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6852201 gtaaaatttataccccactcccttataacatgtttgaattacaaccctcccttaatcattaaatatgatttacacttgaatctatttaacataaattaat 6852102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 47216173 - 47216249
Alignment:
Q  230 cttgaattacaac--cctcccttaatcattaaatatgatttacagttgaatctatttaacataaattaatattttta 304  Q
    |||||||||||||  ||||||||||| |||||||||||| |||| || |||||||||||||||||| ||||||||||    
T  47216173 cttgaattacaactccctcccttaataattaaatatgatctacactttaatctatttaacataaataaatattttta 47216249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 185 - 304
Target Start/End: Original strand, 27930833 - 27930961
Alignment:
Q  185 acactcctcttccctgtaaagtaaaatttatactccattccctta-------cttgaattacaaccc--tcccttaatcattaaatatgatttacagttg 275  Q
    ||||||| || || ||||||||||||||||||||||  |||||||       |||||||||||||||  ||||||||| ||||||||||||  ||| ||     
T  27930833 acactcccctcccttgtaaagtaaaatttatactcctctcccttataagatgcttgaattacaaccccctcccttaataattaaatatgatacacacttt 27930932  T
Q  276 aatctatttaacataaattaatattttta 304  Q
    ||| |||||||||||||| ||||||||||    
T  27930933 aatatatttaacataaataaatattttta 27930961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 304
Target Start/End: Complemental strand, 15357559 - 15357484
Alignment:
Q  231 ttgaattacaaccc--tcccttaatcattaaatatgatttacagttgaatctatttaacataaattaatattttta 304  Q
    ||||||||||||||  ||||||||| ||||||||||||  ||| || |||||||||||||||||| ||||||||||    
T  15357559 ttgaattacaaccccctcccttaataattaaatatgatcaacactttaatctatttaacataaataaatattttta 15357484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 28044612 - 28044671
Alignment:
Q  245 tcccttaatcattaaatatgatttacagttgaatctatttaacataaattaatattttta 304  Q
    ||||||||| |||||||||||| |||| || |||||||||||||||||| ||||||||||    
T  28044612 tcccttaataattaaatatgatctacactttaatctatttaacataaataaatattttta 28044671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 7307537 - 7307461
Alignment:
Q  230 cttgaattacaaccct-cccttaatcattaaatatgatttacagttgaatctattt-aacataaattaatattttta 304  Q
    |||||||| ||||||| |||||||| ||||||||||  ||||| || ||||||||| ||||||||| ||||||||||    
T  7307537 cttgaattgcaacccttcccttaataattaaatatgtcttacactttaatctattttaacataaataaatattttta 7307461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 45738130 - 45738193
Alignment:
Q  242 ccctcccttaatcattaaatatgatttacagttgaatcta-tttaacataaattaatattttta 304  Q
    |||||||||||| ||||||||||   ||||||| |||||| |||||||||||| ||||||||||    
T  45738130 ccctcccttaataattaaatatggactacagtttaatctattttaacataaataaatattttta 45738193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 2275207 - 2275284
Alignment:
Q  230 cttgaattacaaccc--tcccttaatcattaaatatgatttacagttgaatcta-tttaacataaattaatattttta 304  Q
    |||||||||||||||  ||||||||| |||||||||||   ||| || |||||| |||||||||||| ||||||||||    
T  2275207 cttgaattacaaccccctcccttaataattaaatatgaacaacactttaatctattttaacataaataaatattttta 2275284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 43320535 - 43320458
Alignment:
Q  230 cttgaattacaa--ccctcccttaatcattaaatatgatttacagttgaatcta-tttaacataaattaatattttta 304  Q
    ||||||||||||  |||||||||||| |||||||||||  |||| || |||||| |||||||| ||| ||||||||||    
T  43320535 cttgaattacaatcccctcccttaataattaaatatgaactacactttaatctattttaacattaataaatattttta 43320458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 45559722 - 45559645
Alignment:
Q  230 cttgaattacaa--ccctcccttaatcattaaatatgatttacagttgaatctattt-aacataaattaatattttta 304  Q
    ||||||||||||  |||||||||||| ||||||||||   |||| || ||||||||| ||||||||| ||||||||||    
T  45559722 cttgaattacaaatccctcccttaataattaaatatgcactacactttaatctattttaacataaataaatattttta 45559645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 46683302 - 46683225
Alignment:
Q  230 cttgaattacaaccc--tcccttaatcattaaatatgatttacagttgaatctattt-aacataaattaatattttta 304  Q
    |||||||||||||||  ||||||||| ||||||||||   |||| || ||||||||| ||||||||| ||||||||||    
T  46683302 cttgaattacaaccccctcccttaataattaaatatggactacactttaatctattttaacataaataaatattttta 46683225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 50143501 - 50143578
Alignment:
Q  230 cttgaattacaa--ccctcccttaatcattaaatatgatttacagttgaatcta-tttaacataaattaatattttta 304  Q
    ||||||||||||  |||||||||||| ||||||||||   |||| || |||||| |||||||||||| ||||||||||    
T  50143501 cttgaattacaaacccctcccttaataattaaatatggactacactttaatctattttaacataaataaatattttta 50143578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 831383 - 831459
Alignment:
Q  230 cttgaattacaac-cctcccttaatcattaaatatgatttacagttgaatctattt-aacataaattaatattttta 304  Q
    ||||||||||||| ||||||||||| |||||| |||   |||| || ||||||||| ||||||||| ||||||||||    
T  831383 cttgaattacaactcctcccttaataattaaaaatgcactacactttaatctattttaacataaataaatattttta 831459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 9997985 - 9997909
Alignment:
Q  230 cttgaattacaac-cctcccttaatcattaaatatgatttacagttgaatctattt-aacataaattaatattttta 304  Q
    ||||||||||||| ||||||||||| | ||||||||   |||| || ||||||||| ||||||||| ||||||||||    
T  9997985 cttgaattacaactcctcccttaataactaaatatgcactacactttaatctattttaacataaataaatattttta 9997909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 10012409 - 10012333
Alignment:
Q  230 cttgaattacaac-cctcccttaatcattaaatatgatttacagttgaatctattt-aacataaattaatattttta 304  Q
    ||||||||||||| ||||||||||| | ||||||||   |||| || ||||||||| ||||||||| ||||||||||    
T  10012409 cttgaattacaactcctcccttaataactaaatatgcactacactttaatctattttaacataaataaatattttta 10012333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 185 - 304
Target Start/End: Complemental strand, 4437988 - 4437860
Alignment:
Q  185 acactcctcttccctgtaaagtaaaatttatactccattccctta-------cttgaattacaaccctc--ccttaatcattaaatatgatttacagttg 275  Q
    ||||||| ||||| ||||||||||||||||||||||  |||||||       |||||||||||||||||  ||||||| |||||||||||| |||| ||     
T  4437988 acactccccttccttgtaaagtaaaatttatactcccctcccttataagatgcttgaattacaaccctctcccttaataattaaatatgatctacacttt 4437889  T
Q  276 aatctatttaacataaattaatattttta 304  Q
    |||||||||||||||||| ||||||||||    
T  4437888 aatctatttaacataaataaatattttta 4437860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 303
Target Start/End: Original strand, 28167656 - 28167732
Alignment:
Q  230 cttgaattacaaccc--tcccttaatcattaaatatgatttacagttgaatctattt-aacataaattaatattttt 303  Q
    |||||||||||||||  |||| |||| ||||||||||  |||||||| ||||||||| ||||||||| |||||||||    
T  28167656 cttgaattacaaccccctcccataataattaaatatgcattacagtttaatctattttaacataaataaatattttt 28167732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 11796768 - 11796691
Alignment:
Q  230 cttgaattacaaccc--tcccttaatcattaaatatgatttacagttgaatctattt-aacataaattaatattttta 304  Q
    |||||||||||||||  ||||||||| ||||||||||   |||| || ||||||||| ||||||||| ||||||||||    
T  11796768 cttgaattacaaccccctcccttaataattaaatatggactacactttaatctattttaacataaataaatattttta 11796691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 11942131 - 11942208
Alignment:
Q  230 cttgaattacaacc--ctcccttaatcattaaatatgatttacagttgaatctattt-aacataaattaatattttta 304  Q
    ||||||||||||||  |||||||||| ||||||||||   |||| || ||||||||| ||||||||| ||||||||||    
T  11942131 cttgaattacaacctcctcccttaataattaaatatgcactacactttaatctattttaacataaataaatattttta 11942208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 33146151 - 33146228
Alignment:
Q  230 cttgaattacaaccc--tcccttaatcattaaatatgatttacagttgaatcta-tttaacataaattaatattttta 304  Q
    |||||||||||||||  ||||||||| ||||||||||   |||| || |||||| |||||||||||| ||||||||||    
T  33146151 cttgaattacaaccccctcccttaataattaaatatggactacactttaatctattttaacataaataaatattttta 33146228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 34830866 - 34830943
Alignment:
Q  230 cttgaattacaacc--ctcccttaatcattaaatatgatttacagttgaatctattt-aacataaattaatattttta 304  Q
    ||||||||||||||  |||||||||| ||||||||||   |||| || ||||||||| ||||||||| ||||||||||    
T  34830866 cttgaattacaacctcctcccttaataattaaatatgcactacactttaatctattttaacataaataaatattttta 34830943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 304
Target Start/End: Original strand, 55068908 - 55069036
Alignment:
Q  185 acactcctcttccctgtaaagtaaaatttatactccattccctta-------cttgaattacaac--cctcccttaatcattaaatatgatttacagttg 275  Q
    ||||||| || || |||||||||||||||||||||   |||||||       |||||||||||||  ||||||||||| |||||||||||| |||| ||     
T  55068908 acactcccctcccttgtaaagtaaaatttatactctcatcccttataagatgcttgaattacaactccctcccttaataattaaatatgatctacacttt 55069007  T
Q  276 aatctatttaacataaattaatattttta 304  Q
    |||||||||||||||||| ||||||||||    
T  55069008 aatctatttaacataaataaatattttta 55069036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 231 - 304
Target Start/End: Complemental strand, 49702999 - 49702924
Alignment:
Q  231 ttgaattacaaccc--tcccttaatcattaaatatgatttacagttgaatctatttaacataaattaatattttta 304  Q
    ||||||||||||||  ||||||||| |||||||||||| |||| || |||||||||||||||||| ||||||||||    
T  49702999 ttgaattacaaccccctcccttaataattaaatatgatctacattttaatctatttaacataaataaatattttta 49702924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 36422178 - 36422253
Alignment:
Q  230 cttgaattacaacc-ctcccttaatcattaaatatgatttacagttgaatctatttaacataaattaatattttta 304  Q
    |||||||||||||  |||||||||| |||||| ||| | |||| || |||||||||||||||||| ||||||||||    
T  36422178 cttgaattacaacttctcccttaataattaaaaatgctctacactttaatctatttaacataaataaatattttta 36422253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 16192273 - 16192197
Alignment:
Q  230 cttgaattacaaccc--tcccttaatcattaaatatgatttacagttgaatctatttaacataaattaatattttta 304  Q
    |||||||||||||||  ||||||||| |||||| ||| | |||| || |||||||||||||||||| ||||| ||||    
T  16192273 cttgaattacaaccccctcccttaatgattaaaaatgctctacactttaatctatttaacataaataaatatgttta 16192197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 4950051 - 4950128
Alignment:
Q  230 cttgaattacaacc--ctcccttaatcattaaatatgatttacagttgaatctattt-aacataaattaatattttta 304  Q
    ||||||||||||||  |||||||||| ||||||||||   |||| || ||||||||| |||||||| |||||||||||    
T  4950051 cttgaattacaacctcctcccttaataattaaatatggactacactttaatctattttaacataaagtaatattttta 4950128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 303
Target Start/End: Original strand, 35666083 - 35666145
Alignment:
Q  242 ccctcccttaatcattaaatatgatttacagttgaatcta-tttaacataaattaatattttt 303  Q
    |||||||||||| |||||||||||  |||| || |||||| |||||||||||| |||||||||    
T  35666083 ccctcccttaataattaaatatgaactacactttaatctattttaacataaataaatattttt 35666145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 37709527 - 37709450
Alignment:
Q  230 cttgaattacaaccc--tcccttaatcattaaatatgatttacagttgaatctattt-aacataaattaatattttta 304  Q
    |||||||||||||||  ||||||||| ||||||||||   |||| || ||||||||| ||||||||| ||||||||||    
T  37709527 cttgaattacaaccccctcccttaataattaaatatgcactacactttaatctattttaacataaataaatattttta 37709450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 304
Target Start/End: Complemental strand, 12268148 - 12268073
Alignment:
Q  231 ttgaattacaaccc--tcccttaatcattaaatatgatttacagttgaatctatttaacataaattaatattttta 304  Q
    ||||||||||||||  | | ||||| |||||| |||||||| | || ||||||||||| |||||| ||||||||||    
T  12268148 ttgaattacaaccccattctttaataattaaacatgatttagactttaatctatttaatataaataaatattttta 12268073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 45241291 - 45241366
Alignment:
Q  230 cttgaattacaaccc-tcccttaatcattaaatatgatttacagttgaatctatttaacataaattaatattttta 304  Q
    ||||||||||||||| ||||||||| |||||||||||| |||| || |||||||||||||||||| ||||||||||    
T  45241291 cttgaattacaacccctcccttaataattaaatatgatctacactttaatctatttaacataaataaatattttta 45241366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 16067357 - 16067420
Alignment:
Q  242 ccctcccttaatcattaaatatgatttacagttgaatcta-tttaacataaattaatattttta 304  Q
    |||||||||||| |||||||||||  |||| || |||||| |||||||||||| ||||||||||    
T  16067357 ccctcccttaataattaaatatgaactacactttaatctattttaacataaataaatattttta 16067420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 3090376 - 3090299
Alignment:
Q  230 cttgaattacaaccc--tcccttaatcattaaatatgatttacagttgaatctattt-aacataaattaatattttta 304  Q
    |||||||||||||||  ||||||||| ||||||||||   |||| || ||||||||| ||||||||| ||||||||||    
T  3090376 cttgaattacaaccccctcccttaataattaaatatggactacactttaatctattttaacataaataaatattttta 3090299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 304
Target Start/End: Original strand, 50383516 - 50383590
Alignment:
Q  231 ttgaattacaaccctcccttaatcattaaatatgatttacagttgaatctattt-aacataaattaatattttta 304  Q
    |||||||||||| |||||||||| ||||||||||   | || || ||||||||| ||||||||| ||||||||||    
T  50383516 ttgaattacaactctcccttaataattaaatatgcactgcactttaatctatttgaacataaataaatattttta 50383590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 18364765 - 18364826
Alignment:
Q  244 ctcccttaatcattaaatatgatttacagttgaatctat-ttaacataaattaatattttta 304  Q
    |||||||||| |||||||||||  |||| || ||||||| ||||||||||| ||||||||||    
T  18364765 ctcccttaataattaaatatgaactacactttaatctatgttaacataaataaatattttta 18364826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 304
Target Start/End: Complemental strand, 11345315 - 11345240
Alignment:
Q  232 tgaattacaaccc--tcccttaatcattaaatatgatttacagttgaatctattt-aacataaattaatattttta 304  Q
    |||||||||||||  ||||||||| ||||||||||   |||| || ||||||||| ||||||||| ||||||||||    
T  11345315 tgaattacaaccccctcccttaataattaaatatggactacactttaatctattttaacataaataaatattttta 11345240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 40036355 - 40036276
Alignment:
Q  228 tacttgaattacaaccc--tcccttaatcattaaatatgatttacagttgaatctattt-aacataaattaatattttta 304  Q
    |||||||||||||||||  ||||||||| ||||||||||   ||||  | ||||||||| ||||||||| ||||||||||    
T  40036355 tacttgaattacaacccgatcccttaataattaaatatgtactacacgttaatctattttaacataaataaatattttta 40036276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 54403676 - 54403755
Alignment:
Q  228 tacttgaattacaa--ccctcccttaatcattaaatatgatttacagttgaatctattt-aacataaattaatattttta 304  Q
    ||||||||||||||  ||||||||| || ||||||||||   |||| || ||||||||| ||||||||| ||||||||||    
T  54403676 tacttgaattacaatcccctcccttgatgattaaatatgcactacactttaatctattttaacataaataaatattttta 54403755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 304
Target Start/End: Complemental strand, 4855891 - 4855816
Alignment:
Q  231 ttgaattacaaccc--tcccttaatcattaaatatgatttacagttgaatctatttaacataaattaatattttta 304  Q
    ||||||||||||||  ||||||||| |||||||||||| |||| || |||||||||||||||||| |||| |||||    
T  4855891 ttgaattacaaccccctcccttaataattaaatatgatctacactttaatctatttaacataaataaatagtttta 4855816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 303
Target Start/End: Complemental strand, 37266099 - 37266024
Alignment:
Q  230 cttgaattacaaccc-tcccttaatcattaaatatgatttacagttgaatcta-tttaacataaattaatattttt 303  Q
    ||||||||||||||| ||||||||| |||||||||||   ||| || |||||| |||||||||||| |||||||||    
T  37266099 cttgaattacaacccctcccttaataattaaatatgaccaacactttaatctattttaacataaataaatattttt 37266024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 3940175 - 3940098
Alignment:
Q  230 cttgaattacaaccc--tcccttaatcattaaatatgatttacagttgaatctattt-aacataaattaatattttta 304  Q
    |||||||||||||||  ||||||||| ||||||||||   |||| || ||||||||| ||||||||| ||||||||||    
T  3940175 cttgaattacaaccccctcccttaataattaaatatgcactacactttaatctattttaacataaataaatattttta 3940098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 34925363 - 34925286
Alignment:
Q  230 cttgaattacaacc--ctcccttaatcattaaatatgatttacagttgaatctattt-aacataaattaatattttta 304  Q
    ||||||||||||||  |||||||||| ||||||||||   |||| || ||||||||| ||||||||| ||||||||||    
T  34925363 cttgaattacaacctcctcccttaataattaaatatgtactacactttaatctattttaacataaataaatattttta 34925286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 303
Target Start/End: Original strand, 17496379 - 17496455
Alignment:
Q  230 cttgaattacaaccc--tcccttaatcattaaatatgatttacagttgaatcta-tttaacataaattaatattttt 303  Q
    |||||||||||||||  ||||||||| |||||||||||   ||| || |||||| |||||||||||| |||||||||    
T  17496379 cttgaattacaaccccctcccttaataattaaatatgaacaacactttaatctattttaacataaataaatattttt 17496455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 304
Target Start/End: Original strand, 44746294 - 44746370
Alignment:
Q  231 ttgaattacaaccc--tcccttaatcattaaatatgatttacagttgaatcta-tttaacataaattaatattttta 304  Q
    ||||||||||||||  ||||||||| ||||||||||   |||| || |||||| |||||||||||| ||||||||||    
T  44746294 ttgaattacaaccccctcccttaataattaaatatggactacactttaatctattttaacataaataaatattttta 44746370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 17564787 - 17564863
Alignment:
Q  230 cttgaattacaacc-ctcccttaatcattaaatatgatttacagttgaatctattt-aacataaattaatattttta 304  Q
    |||||||||||||| |||||||||| | ||||||||   |||| || ||||||||| ||||||||| ||||||||||    
T  17564787 cttgaattacaacctctcccttaataactaaatatggactacactttaatctattttaacataaataaatattttta 17564863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 304
Target Start/End: Complemental strand, 1573696 - 1573635
Alignment:
Q  243 cctcccttaatcattaaatatgatttacagttgaatctatttaacataaattaatattttta 304  Q
    ||||||||||| |||||||||| | |||| || |||||||||||||||||| ||||||||||    
T  1573696 cctcccttaataattaaatatgttctacactttaatctatttaacataaataaatattttta 1573635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 45941567 - 45941646
Alignment:
Q  228 tacttgaattacaac--cctcccttaatcattaaatatgatttacagttgaatcta-tttaacataaattaatattttta 304  Q
    |||||||||||||||  ||||||||||| ||||||||||   |||| || |||||| |||||||||||| ||||||||||    
T  45941567 tacttgaattacaactccctcccttaataattaaatatgcactacactttaatctattttaacataaataaatattttta 45941646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 304
Target Start/End: Original strand, 5227934 - 5228046
Alignment:
Q  202 aaagtaaaatttatactccattccctta-------cttgaattacaaccc--tcccttaatcattaaatatgatttacagttgaatcta-tttaacataa 291  Q
    |||||||||||||||||||  |||||||       |||||||||||||||  ||||||||| ||||||||||   |||| || |||||| ||||||||||    
T  5227934 aaagtaaaatttatactcccctcccttataagatgcttgaattacaaccccctcccttaataattaaatatgcagtacactttaatctattttaacataa 5228033  T
Q  292 attaatattttta 304  Q
    || ||||||||||    
T  5228034 ataaatattttta 5228046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 22711765 - 22711828
Alignment:
Q  242 ccctcccttaatcattaaatatgatttacagttgaatcta-tttaacataaattaatattttta 304  Q
    |||||||||||| |||||||||||  |||| || |||||| |||||||||||| ||||||||||    
T  22711765 ccctcccttaataattaaatatgaactacactttaatctattttaacataaataaatattttta 22711828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 23742129 - 23742191
Alignment:
Q  242 ccctcccttaatcattaaatatgatttacagttgaatctatttaacataaattaatattttta 304  Q
    |||||||||||| |||||| ||| | |||| || ||||||||||||||||||  |||||||||    
T  23742129 ccctcccttaataattaaaaatgctctacactttaatctatttaacataaatacatattttta 23742191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 304
Target Start/End: Complemental strand, 46011076 - 46011000
Alignment:
Q  231 ttgaattacaaccc--tcccttaatcattaaatatgatttacagttgaatctattt-aacataaattaatattttta 304  Q
    ||||||||||||||  ||||||||| ||||||||||   |||| || ||||||||| ||||||||| ||||||||||    
T  46011076 ttgaattacaaccccctcccttaataattaaatatgggctacattttaatctattttaacataaataaatattttta 46011000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 40956872 - 40956948
Alignment:
Q  230 cttgaattacaaccc--tcccttaatcattaaatatgatttacagttgaatctatttaacataaattaatattttta 304  Q
    |||||||||||||||  ||||||||| |||||| ||| | |||| || |||||||||||||||||| ||||||||||    
T  40956872 cttgaattacaaccccctcccttaataattaaaaatgctctacactttaatctatttaacataaataaatattttta 40956948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 231 - 304
Target Start/End: Original strand, 19500884 - 19500959
Alignment:
Q  231 ttgaattacaacc--ctcccttaatcattaaatatgatttacagttgaatctatttaacataaattaatattttta 304  Q
    |||||||||||||  |||||||||  |||||||||| | |||| || |||||||||||||||||| ||||||||||    
T  19500884 ttgaattacaacctcctcccttaacaattaaatatgctctacacttcaatctatttaacataaataaatattttta 19500959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 5138922 - 5138845
Alignment:
Q  230 cttgaattacaaccctc--ccttaatcattaaatatgatttacagttgaatctattt-aacataaattaatattttta 304  Q
    |||||||||||||||||  ||||||| ||||||||||  ||||| || ||||||||| ||||||||| ||||||||||    
T  5138922 cttgaattacaaccctctcccttaataattaaatatggattacactttaatctattttaacataaataaatattttta 5138845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 4876827 - 4876904
Alignment:
Q  230 cttgaattacaaccctc--ccttaatcattaaatatgatttacagttgaatctattt-aacataaattaatattttta 304  Q
    |||||||||||||||||  ||||||| ||||||||||   |||| || ||||||||| ||||||||| ||||||||||    
T  4876827 cttgaattacaaccctctcccttaataattaaatatgcactacactttaatctattttaacataaataaatattttta 4876904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 304
Target Start/End: Complemental strand, 15145023 - 15144959
Alignment:
Q  241 accctcccttaatcattaaatatgatttacagttgaatcta-tttaacataaattaatattttta 304  Q
    ||||||||||||| ||||||||||  ||||| || |||||| |||||||||||  ||||||||||    
T  15145023 accctcccttaataattaaatatggattacactttaatctattttaacataaacaaatattttta 15144959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 304
Target Start/End: Complemental strand, 32114417 - 32114288
Alignment:
Q  185 acactcctcttccctgtaaagtaaaatttatactccattccctta-------cttgaattacaaccc--tcccttaatcattaaatatgatttacagttg 275  Q
    |||||||||| || || |||||||||| |||||||| ||||||||       |||||||||||||||  ||||||||| ||||||||||   |||| ||     
T  32114417 acactcctctcccttgaaaagtaaaatgtatactcccttcccttataagatgcttgaattacaaccccctcccttaataattaaatatgcactacacttt 32114318  T
Q  276 aatctattt-aacataaattaatattttta 304  Q
    ||||||||| ||||||||| ||||||||||    
T  32114317 aatctattttaacataaataaatattttta 32114288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 30461555 - 30461634
Alignment:
Q  228 tacttgaattacaacc--ctcccttaatcattaaatatgatttacagttgaatctattt-aacataaattaatattttta 304  Q
    ||||||||||||||||  |||||||||| ||||||||||   |||| || ||||||||| ||||||||| ||||||||||    
T  30461555 tacttgaattacaacctcctcccttaataattaaatatgcactacactttaatctattttaacataaataaatattttta 30461634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0695 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0695
Description:

Target: scaffold0695; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 304
Target Start/End: Original strand, 2341 - 2416
Alignment:
Q  231 ttgaattacaacc--ctcccttaatcattaaatatgatttacagttgaatctatttaacataaattaatattttta 304  Q
    |||||||||||||  |||||||||| ||||||||||   |||| || |||||||||||| ||||| ||||||||||    
T  2341 ttgaattacaaccgcctcccttaataattaaatatgcactacactttaatctatttaacttaaataaatattttta 2416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0712 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 4277 - 4200
Alignment:
Q  230 cttgaattacaacc--ctcccttaatcattaaatatgatttacagttgaatctattt-aacataaattaatattttta 304  Q
    ||||||||||||||  |||||||||| |||||||||||  |||| || || |||||| ||||||||| ||||||||||    
T  4277 cttgaattacaaccatctcccttaataattaaatatgaactacactttaacctattttaacataaataaatattttta 4200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0709 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 4297 - 4220
Alignment:
Q  230 cttgaattacaacc--ctcccttaatcattaaatatgatttacagttgaatctattt-aacataaattaatattttta 304  Q
    ||||||||||||||  |||||||||| |||||||||||  |||| || || |||||| ||||||||| ||||||||||    
T  4297 cttgaattacaaccatctcccttaataattaaatatgaactacactttaacctattttaacataaataaatattttta 4220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University