View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10399_1 (Length: 624)
Name: NF10399_1
Description: NF10399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10399_1 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 366 - 613
Target Start/End: Original strand, 42205292 - 42205539
Alignment:
| Q |
366 |
ttatccattccttgcataaagggcacctttgtccagccatatatatggaagattgcaaacactttttgcaaaaactacaaaagtgtatattcttaattag |
465 |
Q |
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| T |
42205292 |
ttatccattccttgcataaagggcacctttgtccagccatatatatggaagattgcaaacactttttgcaaaaactacaaaagtgtatattcttaattag |
42205391 |
T |
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| Q |
466 |
aaaagttagaagttgatgcacaataaactaaattgagtatgagtcatgacaaatgtctaacatagatataaaatcaacaatatgatacttgaacattaat |
565 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205392 |
aaaagttagaagttgatgcacaataaactaaattgagtatgagtcatgacaaatgtctaacatagatataaaatcaacaatatgatacttgaacattaat |
42205491 |
T |
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| Q |
566 |
cgttttcatacactcattcaacaatgatcattatttttctatctctct |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205492 |
cgttttcatacactcattcaacaatgatcattatttttctatctctct |
42205539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 366 - 613
Target Start/End: Original strand, 42214160 - 42214407
Alignment:
| Q |
366 |
ttatccattccttgcataaagggcacctttgtccagccatatatatggaagattgcaaacactttttgcaaaaactacaaaagtgtatattcttaattag |
465 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214160 |
ttatccattccttgcataaagggcacctttgtccagccatatatatggaagattgcaaacactttttgcaaaaactacaaaagtgtatattcttaattag |
42214259 |
T |
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| Q |
466 |
aaaagttagaagttgatgcacaataaactaaattgagtatgagtcatgacaaatgtctaacatagatataaaatcaacaatatgatacttgaacattaat |
565 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214260 |
aaaagttagaagttgatgcacaataaactaaattgagtatgagtcatgacaaatgtctaacatagatataaaatcaacaatatgatacttgaacattaat |
42214359 |
T |
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| Q |
566 |
cgttttcatacactcattcaacaatgatcattatttttctatctctct |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214360 |
cgttttcatacactcattcaacaatgatcattatttttctatctctct |
42214407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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