View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10399_12 (Length: 311)
Name: NF10399_12
Description: NF10399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10399_12 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 311
Target Start/End: Complemental strand, 36512616 - 36512321
Alignment:
| Q |
16 |
atcgcccataaataaggggagaaatgggctgaatttggaacctgaacagagaatggaacagaaactgttgaaacaggaatcagggtcgggattggaacag |
115 |
Q |
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| T |
36512616 |
atcgcccataaataaggggagaaatgggctgaatttggaacctgaacagagaatggaacagaaactgttgaaacaggaatcaggatcgggattggaacag |
36512517 |
T |
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| Q |
116 |
aaatcagatggagatctcgtggaatcgaaaccggaacagaaagccgttgaagaagattttgtgaagtacttctctaagttccctaagtatgacgattccg |
215 |
Q |
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| T |
36512516 |
aaatcagatggagatctcgtggaatcgaaaccggaacagaaagccgttgaagaagattttgtgaagtacttctctaagttctctaagtatgacgattccg |
36512417 |
T |
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| Q |
216 |
actttccttatcacgtcaaaagtggtaattttgagtataagaatgaggcatataggctgcttgaggctcaaattcaaatctataaggagaagtctc |
311 |
Q |
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| T |
36512416 |
actttccttatcacgtcaaaagtggtaattttgagtataagaatgaggcatataggctgcttgaggctcaaattcaaatctataaggagaagtctc |
36512321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 198 - 311
Target Start/End: Original strand, 36808373 - 36808484
Alignment:
| Q |
198 |
ctaagtatgacgattccgactttccttatcacgtcaaaagtggtaattttgagtataagaatgaggcatataggctgcttgaggctcaaattcaaatcta |
297 |
Q |
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||||| ||||||||||||||||||| ||| ||| |||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||| || |
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| T |
36808373 |
ctaagcatgacgattccgactttccatattacggcaaacgtggtaattttgagtataagaatgaggcatataggaagc--aaggctcaaattcaaatata |
36808470 |
T |
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| Q |
298 |
taaggagaagtctc |
311 |
Q |
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|||||||||||||| |
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| T |
36808471 |
taaggagaagtctc |
36808484 |
T |
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