View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10399_13 (Length: 309)
Name: NF10399_13
Description: NF10399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10399_13 |
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Alignment Details
Target: chr7 (Bit Score: 124; Significance: 9e-64; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 135 - 283
Target Start/End: Complemental strand, 36905122 - 36904974
Alignment:
| Q |
135 |
gatcacgatgcaatacttcctnnnnnnntataatcttgttttttattctgaagtttaactctataagtacgtataaaccaacaaacaaagtaaaactctc |
234 |
Q |
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| T |
36905122 |
gatcacgatgcaatacttcctaaaaaaatataatcttgttttttattctgaagtttaactctataaatacgtataaaccaacaaacaaagtaaaactctc |
36905023 |
T |
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| Q |
235 |
caaagctaaacctaatttgtttgttttttcatataactctccaaaggga |
283 |
Q |
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| T |
36905022 |
caaagctaaacctaatttgtttgttttttcatataactctccaaaggga |
36904974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 135 - 261
Target Start/End: Original strand, 37072667 - 37072795
Alignment:
| Q |
135 |
gatcacgatgcaatacttcctnnnnnnnt-ataatcttgtttt-ttattctgaagtttaactctataagtacgtataaaccaacaaacaaagtaaaactc |
232 |
Q |
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||||||||||||||||||||| | ||||||||||||| ||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||| |
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| T |
37072667 |
gatcacgatgcaatacttccttaaaaaatgataatcttgtttttttattctgaagtttagctctataaatacgtataagccaacaaacaaagtaaaactc |
37072766 |
T |
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| Q |
233 |
tccaaagctaaacctaatttgtttgtttt |
261 |
Q |
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| T |
37072767 |
tccaaagctaaagctaatttgtttgtttt |
37072795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 36905239 - 36905175
Alignment:
| Q |
18 |
ctgtgtaactgaataccgcggattactgtacgctagtttgttaataacattggattttcagtttt |
82 |
Q |
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| T |
36905239 |
ctgtgtaactgaataccgcggattactgtacgctagtttgttaataacattggattttcagtttt |
36905175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 279
Target Start/End: Complemental strand, 41372116 - 41372051
Alignment:
| Q |
214 |
aacaaacaaagtaaaactctccaaagctaaacctaatttgtttgttttttcatataactctccaaa |
279 |
Q |
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|||||||||| || |||||||||||| ||||||||||| |||| |||| |||||| |||||||||| |
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| T |
41372116 |
aacaaacaaaatataactctccaaagttaaacctaattagtttcttttctcatatcactctccaaa |
41372051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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