View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10399_2 (Length: 527)
Name: NF10399_2
Description: NF10399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10399_2 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 2 - 518
Target Start/End: Original strand, 36205210 - 36205727
Alignment:
| Q |
2 |
tttgctatctattttctttatcaaattaacataatctcaaataacctgtttaattaatttggtagcatcttttattataaattgtggaaatattgaaaca |
101 |
Q |
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|||||| | |||| ||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36205210 |
tttgctctatattctctttatcaaattaacataatatcaaataacccgtttaattaattaggtagcatcttttattataaattgtggaaatattgaaaca |
36205309 |
T |
|
| Q |
102 |
taaataacagaaagtctcaatcaattatctaaaagtacacaccagggatttcaaactactttttctcctccagagaatttacgttttcaatcattctcag |
201 |
Q |
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| T |
36205310 |
taaataacataaagtctcaatcaattattttcaagtacacaccagggatttcaaactactttttctcctccagagaatttacgttttcaatcattctctg |
36205409 |
T |
|
| Q |
202 |
tactagtagctagtttaattatttaagtagtatccatgaagtaaacttattcaatcattaaagaaaagatgtttcttatcacacca--------gggata |
293 |
Q |
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| T |
36205410 |
ta------gctagtttaattatt-aagtagtatccatgaagtaaacttattcaatcaataaagaaaagatgtttcttatcacaccaccctcaaagggata |
36205502 |
T |
|
| Q |
294 |
agaaaaagtacaatcatttgcataatttcaagcatccattactcttccaattctcaaatatacttgaaacttggcagtcttttggccaccttcaccccaa |
393 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| | | |
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| T |
36205503 |
agaagaagtacaatcatttgcataatttcaagcatccattactcttccaattctcaaatatacttgaaacttgacagtcttttggccatcttcaccacga |
36205602 |
T |
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| Q |
394 |
gcaagtttgaatttttcaataacatcctccttaagcagttcaacccctttattctttgatgtctggtatgctgaccttgatcttatataagtcaagaaat |
493 |
Q |
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| T |
36205603 |
gcaagtttaaaattttcaataacatcctccttaagcagttcaaccccgttattctttgatgtctgatatgatgaccttgatcttatataagtcaagaaat |
36205702 |
T |
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| Q |
494 |
catcaaaatccatcacagtctctgc |
518 |
Q |
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| T |
36205703 |
catcaaaatccatcacagtctctgc |
36205727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 287 - 515
Target Start/End: Original strand, 36208583 - 36208811
Alignment:
| Q |
287 |
agggataagaaaaagtacaatcatttgcataatttcaagcatccattactcttccaattctcaaatatacttgaaacttggcagtcttttggccaccttc |
386 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||| ||| |||| |
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| T |
36208583 |
agggataagaaaaagtacaatcatttgcatattttcaagcatcccttactcttccaattctcagatatacttgaaacttggcaatcttttttccatcttc |
36208682 |
T |
|
| Q |
387 |
accccaagcaagtttgaatttttcaataacatcctccttaagcagttcaacccctttattctttgatgtctggtatgctgaccttgatcttatataagtc |
486 |
Q |
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|||||||||||||||||||||||||||||||| || |||| || |||||||||||||||||||||| ||| || ||||||||||||||||||||| || |
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| T |
36208683 |
tccccaagcaagtttgaatttttcaataacatcatcagtaagaagctcaacccctttattctttgatgactgataagctgaccttgatcttatataattc |
36208782 |
T |
|
| Q |
487 |
aagaaatcatcaaaatccatcacagtctc |
515 |
Q |
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| T |
36208783 |
aagaagtcatccaaatccatcacagtctc |
36208811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 334 - 501
Target Start/End: Complemental strand, 35400147 - 35399980
Alignment:
| Q |
334 |
actcttccaattctcaaatatacttgaaacttggcagtcttttggccaccttcaccccaagcaagtttgaatttttcaataacatcctccttaagcagtt |
433 |
Q |
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|||||||||||||||| ||| ||| ||||||||||||| || |||||| |||||||||||||||| || |||||||||| || ||||| ||| || | |
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| T |
35400147 |
actcttccaattctcagataaactggaaacttggcagttttgtggccatcttcaccccaagcaagcttaaatttttcaactacgtcctcaccaagaagct |
35400048 |
T |
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| Q |
434 |
caacccctttattctttgatgtctggtatgctgaccttgatcttatataagtcaagaaatcatcaaaa |
501 |
Q |
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| || || || ||||||| |||||| || ||||||| |||| ||||||| || || ||| |||||||| |
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| T |
35400047 |
ccacacccttcttctttgctgtctgataagctgaccatgattttatatatgttaacaaaccatcaaaa |
35399980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 334 - 501
Target Start/End: Complemental strand, 35405076 - 35404909
Alignment:
| Q |
334 |
actcttccaattctcaaatatacttgaaacttggcagtcttttggccaccttcaccccaagcaagtttgaatttttcaataacatcctccttaagcagtt |
433 |
Q |
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|||||||||||||||| ||| ||| ||||||||||||| || |||||| |||||||||||||||| || |||||||||| || ||||| ||| || | |
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| T |
35405076 |
actcttccaattctcagataaactggaaacttggcagttttgtggccatcttcaccccaagcaagcttaaatttttcaactacgtcctcaccaagaagct |
35404977 |
T |
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| Q |
434 |
caacccctttattctttgatgtctggtatgctgaccttgatcttatataagtcaagaaatcatcaaaa |
501 |
Q |
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| T |
35404976 |
ccacacccttctcctttgctgtctgataagctgaccatgattttatataagttaacaaaccatcaaaa |
35404909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 36208431 - 36208492
Alignment:
| Q |
110 |
agaaagtctcaatcaattatctaaaagtacacaccagggatttcaaactactttttctcctc |
171 |
Q |
| |
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|||||| |||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| |
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| T |
36208431 |
agaaaggctcaatcaattatctacaagtacacaccaggggtttcaaactagtttttctcctc |
36208492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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