View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10399_3 (Length: 488)
Name: NF10399_3
Description: NF10399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10399_3 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 11959459 - 11959694
Alignment:
| Q |
13 |
tttaaattgtctcctattaaagtgtctgtctacacttcttgtcaacttagaaaaaattcatttcccctatgtaacttgtaagattaaatgaatgtatgta |
112 |
Q |
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| T |
11959459 |
tttaaattgtctcctattaaagtgtctgtctacacttcttgtcaacttagaaaaaattcatttcccctatgtaacttgtaagattaaatgaatgtatgta |
11959558 |
T |
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| Q |
113 |
actaattaaatttaacgaacttattttttactaaattttaaccgtacttataaatgctaaataaataaaacatgaagtagactagaattcaacttgagtg |
212 |
Q |
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| T |
11959559 |
actaattaaatttaacgaacttatttcttactaaattttaaccgtacttataaatgctaaataaataaaacatgaagtagactagaattcaacttgagtg |
11959658 |
T |
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| Q |
213 |
gaaagaagaagnnnnnnngtaaacttcaacacgtgg |
248 |
Q |
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| T |
11959659 |
gaaagaagaagaaaaaaagtaaacttcaacacgtgg |
11959694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 316 - 483
Target Start/End: Original strand, 11961397 - 11961564
Alignment:
| Q |
316 |
ccgggctcttgaatactactagcattgtcataccacttaatccatgtagcacgtctctcatcctcccatggactagcataaaccactgtaagtaaacata |
415 |
Q |
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| T |
11961397 |
ccgggctcttgaatactactagcattgtcataccacttaatccatgtagcacgtctctcattctcccgtggactagcataaaccactgtaagtaaccata |
11961496 |
T |
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| Q |
416 |
tctccctttgtgctttcattagcaagtggtgactgatgttcaccacccaattcgttattcatctcact |
483 |
Q |
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| T |
11961497 |
tctccctttgtgttttcattagcaagtggtgactgatgttcaccacccaattcgttattgatgtcact |
11961564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 11853807 - 11853885
Alignment:
| Q |
122 |
atttaacgaacttattttttactaaattttaaccgtacttataaatgctaaataaataaaacatgaagtagactagaat |
200 |
Q |
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| T |
11853807 |
atttaaccaatttattttttactaaattttaaccatacttataaatgccaaataaataaaacatgaagtaaactggaat |
11853885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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