View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10399_5 (Length: 369)
Name: NF10399_5
Description: NF10399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10399_5 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 13 - 369
Target Start/End: Complemental strand, 15867100 - 15866744
Alignment:
| Q |
13 |
cagaccctgatcaaattaaggaagtctttaacaagatcgaagacttccccaaaccaatattaaaatccatcgccaagtatttgagcgttggtatagtaca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15867100 |
cagaccctgatcaaattaaggaagtctttaacaagatcgaggacttccccaaaccaatattaaaatccatcgccaagtatttgagcgttggtataataca |
15867001 |
T |
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| Q |
113 |
ttatgagggtaagaaatgggctaaacataggaagatcgccaatccggcattccacctagagaaattgaaagtaaggttattgctttaataattcttgcaa |
212 |
Q |
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| T |
15867000 |
ttatgagggtaagaaatgggctaaacataggaagatcgccaatccggcattccacctagaaaaattgaaagtaaggttattgctttaataattcttgcaa |
15866901 |
T |
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| Q |
213 |
tttggtaaattaaatttctaatttttattcttataatatgatttatttcaaactataggttatgctgcctgcattttctcacagttgcaatgaaatgata |
312 |
Q |
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| T |
15866900 |
ttttgcaaattaaatttctaatttttattcttataatatgatttacttcaaactatagggtatgctacctgcattttcttacagttgcaatgaaatgatt |
15866801 |
T |
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| Q |
313 |
agcaaatggaaggaattattgtcatcagatggaacatgtgagcttgatgtttggcct |
369 |
Q |
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| T |
15866800 |
agtaaatggaaggaactattgtcatcagatggaacatgtgaggttgatgtttggcct |
15866744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 11 - 369
Target Start/End: Complemental strand, 15860716 - 15860357
Alignment:
| Q |
11 |
cacagaccctgatcaaattaaggaagtctttaacaagatcgaagacttccccaaaccaatattaaaatccatcgccaagtatttgagcgttggtatagta |
110 |
Q |
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| T |
15860716 |
cacagaccctgatcaaattaaggatgtctttaacaagattgatgacttccccaaaccaaaactaagatccatcgccaagtatttgaacgttggtatacta |
15860617 |
T |
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| Q |
111 |
cattatgagggtaagaaatgggctaaacataggaagatcgccaatccggcattccacctagagaaattgaaagtaaggttattgctttaat-aattcttg |
209 |
Q |
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| T |
15860616 |
gatcatgagggtaagaaatgggctaaacataggaagatcgccaatccagcattccacctagaaaaattgaaagtaaggttattgctttaattaattcttg |
15860517 |
T |
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| Q |
210 |
caatttggtaaattaaatttctaatttttattcttataatatgatttatttcaaactataggttatgctgcctgcattttctcacagttgcaatgaaatg |
309 |
Q |
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| T |
15860516 |
caattttgtaaattaaatttctaatttttattcttataatatgatttacttcaaactataggttatgctgcctgcattttctcacagttgcaatgaaatg |
15860417 |
T |
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| Q |
310 |
ataagcaaatggaaggaattattgtcatcagatggaacatgtgagcttgatgtttggcct |
369 |
Q |
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| T |
15860416 |
ataagcaaatggaagggattattgtcatcagatggaacatgtgagattgatgtttggcct |
15860357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 369
Target Start/End: Complemental strand, 15853354 - 15852996
Alignment:
| Q |
11 |
cacagaccctgatcaaattaaggaagtctttaacaagatcgaagacttccccaaaccaatattaaaatccatcgccaagtatttgagcgttggtatagta |
110 |
Q |
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|||||||||||||||||||||||| ||||||||||||| || ||||||||||||| || |||| | |||| ||| ||||||||| |||||||||||| |
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| T |
15853354 |
cacagaccctgatcaaattaaggatgtctttaacaagactgaggacttccccaaacaaaagttaagacccattgccttgtatttgagtgttggtatagta |
15853255 |
T |
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| Q |
111 |
cattatgagggtaagaaatgggctaaacataggaagatcgccaatccggcattccacctagagaaattgaaagtaaggttattgctttaataattcttgc |
210 |
Q |
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|| |||||||| |||||||||||| |||| | ||||| | ||||||||||||||| |||| |||||||||||||||||||| ||| ||||| || | |
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| T |
15853254 |
caccatgagggtgagaaatgggctacacatcgaaagatagtcaatccggcattccatatagaaaaattgaaagtaaggttattacttagctaattatttc |
15853155 |
T |
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| Q |
211 |
aatttggtaaattaaatttctaatttttattcttataatatgatttatttcaaactataggttatgctgcctgcattttctcacagttgcaatgaaatga |
310 |
Q |
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||||| | ||||| ||||||||| |||| ||||||| |||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
15853154 |
aattttgcaaattgaatttctaacttttcttcttattatatgatttacttcatactatagggtatgctgcctgcattttctcacagttgcaatgaaatga |
15853055 |
T |
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| Q |
311 |
taagcaaatggaaggaattattgtcatcagatggaacatgtgagcttgatgtttggcct |
369 |
Q |
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| T |
15853054 |
taagcaaatggaatggtttattgtcatcagatggaacatgtgagattgatgtttggcct |
15852996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 11 - 369
Target Start/End: Complemental strand, 15846526 - 15846168
Alignment:
| Q |
11 |
cacagaccctgatcaaattaaggaagtctttaacaagatcgaagacttccccaaaccaatattaaaatccatcgccaagtatttgagcgttggtatagta |
110 |
Q |
| |
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||||||||||||||||||||||||| ||||||||| ||| || |||||||||||| ||| || | ||||| |||||||||| | |||||||||| | |
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| T |
15846526 |
cacagaccctgatcaaattaaggaaatctttaacaggatggaggacttccccaaatcaaagttcatctccatttccaagtatttcggtgttggtatagca |
15846427 |
T |
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| Q |
111 |
cattatgagggtaagaaatgggctaaacataggaagatcgccaatccggcattccacctagagaaattgaaagtaaggttattgctttaa-taattcttg |
209 |
Q |
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| T |
15846426 |
caccaagagggtgagaaatgggctaaacatcgaaagatagtcaatccggcattccacatagaaaaattgaaagtaaggttattgctctagctaattattt |
15846327 |
T |
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| Q |
210 |
caatttggtaaattaaatttctaatttttattcttataatatgatttatttcaaactataggttatgctgcctgcattttctcacagttgcaatgaaatg |
309 |
Q |
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|||||| |||| || ||||||||| |||| |||||||||||||||||| || | ||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
15846326 |
caattttgtaa-ttgaatttctaaattttcttcttataatatgatttactttatactgtagggtatgctgcctgcattttctcacagttgcaatgaaatg |
15846228 |
T |
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| Q |
310 |
ataagcaaatggaaggaattattgtcatcagatggaacatgtgagcttgatgtttggcct |
369 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15846227 |
ataagcaaatggaagggattattgtcatcagatggaacatgtgagcttgatgtttggcct |
15846168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 353
Target Start/End: Original strand, 30394070 - 30394128
Alignment:
| Q |
295 |
agttgcaatgaaatgataagcaaatggaaggaattattgtcatcagatggaacatgtga |
353 |
Q |
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| T |
30394070 |
agttgcaatgatatgattagcaaatgggaggaaatgttgtcttcagatggatcatgtga |
30394128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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