View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10399_9 (Length: 334)
Name: NF10399_9
Description: NF10399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10399_9 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 112 - 334
Target Start/End: Complemental strand, 9661320 - 9661097
Alignment:
| Q |
112 |
tcaatatgaaaaatttcttcccatgattttattacaaaatttaaattgcgtgtatataccagtataatgttttgatttagaaatacattttatatgaacg |
211 |
Q |
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| T |
9661320 |
tcaatatgaaaaatttcttcccatgattttattacaaaatttaaattgcgtgtatataccagtataatattttgatttagaaatacattttatacgaacc |
9661221 |
T |
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| Q |
212 |
gatatttatatgatcatcattgttgtaattgaaag-nnnnnnnttaaaacattgaatttgaaaacaatgaagttgaatttggatattttacttggcaatt |
310 |
Q |
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| T |
9661220 |
gatatttatatgatcatcattgttgtaattgaaagaaagaaaattaaaacattgaatttgaaaacaatcaagttgaatttggatattttacttggcaatt |
9661121 |
T |
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| Q |
311 |
aggacattagaaaaaaggaaatag |
334 |
Q |
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| T |
9661120 |
aggacattagaaaaaaggaaatag |
9661097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 112 - 235
Target Start/End: Complemental strand, 9650289 - 9650168
Alignment:
| Q |
112 |
tcaatatgaaaaatttcttcccatgattttattacaaaatttaaattgcgtgtatataccagtataatgttttgatttagaaatacattttatatgaacg |
211 |
Q |
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|||||||||||||| ||| | |||||||| |||| ||||||| ||||| |||| || || | ||| ||||||||| ||||||||||||||| ||| | |
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| T |
9650289 |
tcaatatgaaaaatctctgcacatgatttcattagaaaatttgaattgtgtgtttaa--caaaaaaatattttgattttgaaatacattttatacgaatg |
9650192 |
T |
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| Q |
212 |
gatatttatatgatcatcattgtt |
235 |
Q |
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| T |
9650191 |
gatatttatatgatcatcattgtt |
9650168 |
T |
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