View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10399_low_2 (Length: 374)
Name: NF10399_low_2
Description: NF10399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10399_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 15867096 - 15866743
Alignment:
| Q |
1 |
ccctgatcaaattaaggaagtctttaacaagatcgaagacttccccaaaccaatattaaaatccatcgccaagtatttgagcgttggtatagtacattat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
15867096 |
ccctgatcaaattaaggaagtctttaacaagatcgaggacttccccaaaccaatattaaaatccatcgccaagtatttgagcgttggtataatacattat |
15866997 |
T |
|
| Q |
101 |
gagggtaagaaatgggctaaacataggaagatcgccaatccggcattccacctagaaaaattgaaagtaaggttattgctttaataattcttgcaatttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15866996 |
gagggtaagaaatgggctaaacataggaagatcgccaatccggcattccacctagaaaaattgaaagtaaggttattgctttaataattcttgcaatttt |
15866897 |
T |
|
| Q |
201 |
gtaaattaaatttctaatttttattcttataatatgatttatttcaaactataggttatgctgcctgcattttctcacagttgcaatgaaatgataagca |
300 |
Q |
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| T |
15866896 |
gcaaattaaatttctaatttttattcttataatatgatttacttcaaactatagggtatgctacctgcattttcttacagttgcaatgaaatgattagta |
15866797 |
T |
|
| Q |
301 |
aatggaaggaattattgtcatcagatggaacatgtgagcttgatgtttggcctt |
354 |
Q |
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| T |
15866796 |
aatggaaggaactattgtcatcagatggaacatgtgaggttgatgtttggcctt |
15866743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 15860710 - 15860356
Alignment:
| Q |
1 |
ccctgatcaaattaaggaagtctttaacaagatcgaagacttccccaaaccaatattaaaatccatcgccaagtatttgagcgttggtatagtacattat |
100 |
Q |
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|||||||||||||||||| |||||||||||||| || |||||||||||||||| | ||| |||||||||||||||||||| |||||||||| || || || |
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| T |
15860710 |
ccctgatcaaattaaggatgtctttaacaagattgatgacttccccaaaccaaaactaagatccatcgccaagtatttgaacgttggtatactagatcat |
15860611 |
T |
|
| Q |
101 |
gagggtaagaaatgggctaaacataggaagatcgccaatccggcattccacctagaaaaattgaaagtaaggttattgctttaat-aattcttgcaattt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
15860610 |
gagggtaagaaatgggctaaacataggaagatcgccaatccagcattccacctagaaaaattgaaagtaaggttattgctttaattaattcttgcaattt |
15860511 |
T |
|
| Q |
200 |
ggtaaattaaatttctaatttttattcttataatatgatttatttcaaactataggttatgctgcctgcattttctcacagttgcaatgaaatgataagc |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15860510 |
tgtaaattaaatttctaatttttattcttataatatgatttacttcaaactataggttatgctgcctgcattttctcacagttgcaatgaaatgataagc |
15860411 |
T |
|
| Q |
300 |
aaatggaaggaattattgtcatcagatggaacatgtgagcttgatgtttggcctt |
354 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
15860410 |
aaatggaagggattattgtcatcagatggaacatgtgagattgatgtttggcctt |
15860356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 15853348 - 15852995
Alignment:
| Q |
1 |
ccctgatcaaattaaggaagtctttaacaagatcgaagacttccccaaaccaatattaaaatccatcgccaagtatttgagcgttggtatagtacattat |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| || ||||||||||||| || |||| | |||| ||| ||||||||| |||||||||||||| || |
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| T |
15853348 |
ccctgatcaaattaaggatgtctttaacaagactgaggacttccccaaacaaaagttaagacccattgccttgtatttgagtgttggtatagtacaccat |
15853249 |
T |
|
| Q |
101 |
gagggtaagaaatgggctaaacataggaagatcgccaatccggcattccacctagaaaaattgaaagtaaggttattgctttaataattcttgcaatttg |
200 |
Q |
| |
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|||||| |||||||||||| |||| | ||||| | ||||||||||||||| ||||||||||||||||||||||||| ||| ||||| || |||||| |
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| T |
15853248 |
gagggtgagaaatgggctacacatcgaaagatagtcaatccggcattccatatagaaaaattgaaagtaaggttattacttagctaattatttcaatttt |
15853149 |
T |
|
| Q |
201 |
gtaaattaaatttctaatttttattcttataatatgatttatttcaaactataggttatgctgcctgcattttctcacagttgcaatgaaatgataagca |
300 |
Q |
| |
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| ||||| ||||||||| |||| ||||||| |||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15853148 |
gcaaattgaatttctaacttttcttcttattatatgatttacttcatactatagggtatgctgcctgcattttctcacagttgcaatgaaatgataagca |
15853049 |
T |
|
| Q |
301 |
aatggaaggaattattgtcatcagatggaacatgtgagcttgatgtttggcctt |
354 |
Q |
| |
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||||||| | ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
15853048 |
aatggaatggtttattgtcatcagatggaacatgtgagattgatgtttggcctt |
15852995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 15846520 - 15846167
Alignment:
| Q |
1 |
ccctgatcaaattaaggaagtctttaacaagatcgaagacttccccaaaccaatattaaaatccatcgccaagtatttgagcgttggtatagtacattat |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||| || |||||||||||| ||| || | ||||| |||||||||| | |||||||||| ||| | |
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| T |
15846520 |
ccctgatcaaattaaggaaatctttaacaggatggaggacttccccaaatcaaagttcatctccatttccaagtatttcggtgttggtatagcacaccaa |
15846421 |
T |
|
| Q |
101 |
gagggtaagaaatgggctaaacataggaagatcgccaatccggcattccacctagaaaaattgaaagtaaggttattgctttaa-taattcttgcaattt |
199 |
Q |
| |
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|||||| ||||||||||||||||| | ||||| | |||||||||||||||| |||||||||||||||||||||||||||| || ||||| || |||||| |
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| T |
15846420 |
gagggtgagaaatgggctaaacatcgaaagatagtcaatccggcattccacatagaaaaattgaaagtaaggttattgctctagctaattatttcaattt |
15846321 |
T |
|
| Q |
200 |
ggtaaattaaatttctaatttttattcttataatatgatttatttcaaactataggttatgctgcctgcattttctcacagttgcaatgaaatgataagc |
299 |
Q |
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|||| || ||||||||| |||| |||||||||||||||||| || | ||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15846320 |
tgtaa-ttgaatttctaaattttcttcttataatatgatttactttatactgtagggtatgctgcctgcattttctcacagttgcaatgaaatgataagc |
15846222 |
T |
|
| Q |
300 |
aaatggaaggaattattgtcatcagatggaacatgtgagcttgatgtttggcctt |
354 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15846221 |
aaatggaagggattattgtcatcagatggaacatgtgagcttgatgtttggcctt |
15846167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 337
Target Start/End: Original strand, 30394070 - 30394128
Alignment:
| Q |
279 |
agttgcaatgaaatgataagcaaatggaaggaattattgtcatcagatggaacatgtga |
337 |
Q |
| |
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||||||||||| ||||| ||||||||| ||||| | ||||| ||||||||| ||||||| |
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| T |
30394070 |
agttgcaatgatatgattagcaaatgggaggaaatgttgtcttcagatggatcatgtga |
30394128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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