View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10399_low_3 (Length: 256)
Name: NF10399_low_3
Description: NF10399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10399_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 36512557 - 36512321
Alignment:
| Q |
1 |
agaaactgttgaaacaggaatcagggtcgggattggaacagaaatcagatggagatctcgtggaatcgaaaccggaacagaaagccgttgaagaagattt |
100 |
Q |
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| T |
36512557 |
agaaactgttgaaacaggaatcaggatcgggattggaacagaaatcagatggagatctcgtggaatcgaaaccggaacagaaagccgttgaagaagattt |
36512458 |
T |
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| Q |
101 |
tgtgaagtacttctctaagttctctaagtatgacgattccgactttccttatcacgtcaaaagtggtaattttgagtataagaatgaggcatataggctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36512457 |
tgtgaagtacttctctaagttctctaagtatgacgattccgactttccttatcacgtcaaaagtggtaattttgagtataagaatgaggcatataggctg |
36512358 |
T |
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| Q |
201 |
cttgaggctcaaattcaaatctataaggagaagtctc |
237 |
Q |
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| T |
36512357 |
cttgaggctcaaattcaaatctataaggagaagtctc |
36512321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 120 - 237
Target Start/End: Original strand, 36808369 - 36808484
Alignment:
| Q |
120 |
ttctctaagtatgacgattccgactttccttatcacgtcaaaagtggtaattttgagtataagaatgaggcatataggctgcttgaggctcaaattcaaa |
219 |
Q |
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||||||||| ||||||||||||||||||| ||| ||| |||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
36808369 |
ttctctaagcatgacgattccgactttccatattacggcaaacgtggtaattttgagtataagaatgaggcatataggaagc--aaggctcaaattcaaa |
36808466 |
T |
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| Q |
220 |
tctataaggagaagtctc |
237 |
Q |
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| T |
36808467 |
tatataaggagaagtctc |
36808484 |
T |
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