View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1039_low_1 (Length: 466)
Name: NF1039_low_1
Description: NF1039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1039_low_1 |
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| [»] scaffold1341 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 30 - 460
Target Start/End: Original strand, 10581567 - 10582004
Alignment:
| Q |
30 |
tttcttagtcgtagaaaaatgaagggttcatctcacgctttcttctaaaattattgataaacatatgtgtatctgagtctttggtaaattctttcacatt |
129 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10581567 |
tttcttagtcgtagaaaaatgaagggttcatctcacgctttcttctaaaattatcgataaacatatgtgtatctgagtctttggtaaattctttcacatt |
10581666 |
T |
|
| Q |
130 |
ccttgaataattttggagatccctttgtgtgcatcctatattttcataacctccaacttgttctttctactattggaaaacaacattttcatagaagatg |
229 |
Q |
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|
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10581667 |
ccttgaataattttggagatccctttgagtgcatcgtatattttcataacctccaacttgttctttctactattggaaaacaacattttcatagaagatg |
10581766 |
T |
|
| Q |
230 |
cctctttctaggtgtgac---cagtgcatgagtatgaccttcataaaaattttcaacttca----tatttaccctattctgtcctcttaaaagcaatatt |
322 |
Q |
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| |||||||||||||||| |||||||||||||||||||||||| || ||| |||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
10581767 |
cttctttctaggtgtgaccagcagtgcatgagtatgaccttcatagaattttgcaacttcatatttatttaccctcttctgtcctcttaaaagcaatatt |
10581866 |
T |
|
| Q |
323 |
ggcattgcatccctcccttgtcaatcttccttttctagctttaggcaaactattttcattaacaaccaattcaggcaaggctatttgtctttctactttg |
422 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
10581867 |
ggcattgcatccctcccttgtcaatcttctttttctagctttaggcaaactattttcattaacaaccaattcaggcaaggctatttgtctttctacttcg |
10581966 |
T |
|
| Q |
423 |
aaaccttcttttgaacataaaaaatactttcatctcac |
460 |
Q |
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||||||||||||||||||||||||||||| ||| |||| |
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| T |
10581967 |
aaaccttcttttgaacataaaaaatacttccatttcac |
10582004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 179
Target Start/End: Original strand, 28655048 - 28655186
Alignment:
| Q |
41 |
tagaaaaatgaagggttcatctcacgctttcttctaaaattattgataaacatatgtgtatctgagtctttggtaaattctttcacattccttgaataat |
140 |
Q |
| |
|
|||||||||||| | ||||||| | | ||||||||||| |||| |||| ||||| | ||| ||||||||| | |||| ||| | || | ||||||||| |
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| T |
28655048 |
tagaaaaatgaatgtttcatcttatgttttcttctaaacttatcaataagcatatttacatcagagtctttgatcaatttttttaaatacattgaataat |
28655147 |
T |
|
| Q |
141 |
tttggagatccctttgtgtgcatcctatattttcataac |
179 |
Q |
| |
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|||| | ||| ||||||||||||| ||||| ||||||| |
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| T |
28655148 |
tttgaaaatctctttgtgtgcatcatatatcgtcataac |
28655186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 33485911 - 33485851
Alignment:
| Q |
136 |
ataattttggagatccctttgtgtgcatcctatattttcataacctccaacttgttctttc |
196 |
Q |
| |
|
||||||||| |||||| |||| |||||||| | |||||||||||| |||| |||||||||| |
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|
| T |
33485911 |
ataattttgaagatccttttgcgtgcatccaacattttcataacccccaaattgttctttc |
33485851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 41 - 179
Target Start/End: Original strand, 15898121 - 15898259
Alignment:
| Q |
41 |
tagaaaaatgaagggttcatctcacgctttcttctaaaattattgataaacatatgtgtatctgagtctttggtaaattctttcacattccttgaataat |
140 |
Q |
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|
||||| ||||||||||| ||||| || |||||||||||||||| || ||||||| || ||| ||||||||| | |||||||||| ||| |||||||| | |
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| T |
15898121 |
tagaagaatgaagggtttatctctcgttttcttctaaaattatcaatgaacatatctgcatcagagtctttgatcaattctttcaaatttcttgaatagt |
15898220 |
T |
|
| Q |
141 |
tttggagatccctttgtgtgcatcctatattttcataac |
179 |
Q |
| |
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|||| | ||| |||||||||||||||||||||||||||| |
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| T |
15898221 |
tttgcaaatctctttgtgtgcatcctatattttcataac |
15898259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 41 - 179
Target Start/End: Complemental strand, 2202904 - 2202766
Alignment:
| Q |
41 |
tagaaaaatgaagggttcatctcacgctttcttctaaaattattgataaacatatgtgtatctgagtctttggtaaattctttcacattccttgaataat |
140 |
Q |
| |
|
||||| ||||||||||| ||||| || |||||||||||||||| || ||||||| || ||| ||||||||| | |||||||||| ||| |||||||| | |
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| T |
2202904 |
tagaagaatgaagggtttatctcccgttttcttctaaaattatcaatgaacatatctgcatcagagtctttgatcaattctttcaaatttcttgaatagt |
2202805 |
T |
|
| Q |
141 |
tttggagatccctttgtgtgcatcctatattttcataac |
179 |
Q |
| |
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|||| | ||| |||||||||||||||||||||||||||| |
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| T |
2202804 |
tttgcaaatctctttgtgtgcatcctatattttcataac |
2202766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 41 - 179
Target Start/End: Complemental strand, 18860011 - 18859872
Alignment:
| Q |
41 |
tagaaaaatgaagggttcatctcacgctttcttctaaaattattgataaacatatgtgtatctgagtctttgg-taaattctttcacattccttgaataa |
139 |
Q |
| |
|
||||| ||||||||||| ||||| || |||||||||||||||| || ||||||| || ||| |||||||||| | |||||||||| ||| |||||||| |
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| T |
18860011 |
tagaagaatgaagggtttatctcccgttttcttctaaaattatcaatgaacatatttgcatcagagtctttggatcaattctttcaaatttcttgaatag |
18859912 |
T |
|
| Q |
140 |
ttttggagatccctttgtgtgcatcctatattttcataac |
179 |
Q |
| |
|
||||| | ||| |||||||||||||||||||||||||||| |
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| T |
18859911 |
ttttgcaaatctctttgtgtgcatcctatattttcataac |
18859872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 31020668 - 31020728
Alignment:
| Q |
136 |
ataattttggagatccctttgtgtgcatcctatattttcataacctccaacttgttctttc |
196 |
Q |
| |
|
||||||||| |||||| |||| |||||||| | |||||||||||| |||| |||||||||| |
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|
| T |
31020668 |
ataattttgaagatccttttgcgtgcatccaacattttcataacccccaaattgttctttc |
31020728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 41 - 179
Target Start/End: Complemental strand, 24319075 - 24318936
Alignment:
| Q |
41 |
tagaaaaatgaagggttcatctcacgctttcttctaaaattattgataaacatatgtgtatctgagtctttgg-taaattctttcacattccttgaataa |
139 |
Q |
| |
|
||||| ||||||||||| ||||| || |||||||||||||||| || ||||||| || ||| |||||||||| | |||||||||| ||| |||||||| |
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|
| T |
24319075 |
tagaagaatgaagggtttatctcccgttttcttctaaaattatcaatgaacatatttgcatcagagtctttggatcaattctttcaaatttcttgaatag |
24318976 |
T |
|
| Q |
140 |
ttttggagatccctttgtgtgcatcctatattttcataac |
179 |
Q |
| |
|
||||| | ||| |||||||||||||||||||||||||||| |
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|
| T |
24318975 |
ttttgcaaatctctttgtgtgcatcctatattttcataac |
24318936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 68 - 188
Target Start/End: Original strand, 12298873 - 12298993
Alignment:
| Q |
68 |
tttcttctaaaattattgataaacatatgtgtatctgagtctttggtaaattctttcacattccttgaataattttggagatccctttgtgtgcatccta |
167 |
Q |
| |
|
|||||| ||||||| | || ||||||| || || ||| |||||| | |||||||||| |||||||||| | ||||| | ||| |||||||||||||||| |
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|
| T |
12298873 |
tttcttttaaaattttcaatgaacatatttgcatttgaatctttgatcaattctttcatattccttgaaaatttttgtaaatctctttgtgtgcatccta |
12298972 |
T |
|
| Q |
168 |
tattttcataacctccaactt |
188 |
Q |
| |
|
|||||||||||| ||||||| |
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|
| T |
12298973 |
tattttcataactcccaactt |
12298993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 25904483 - 25904563
Alignment:
| Q |
31 |
ttcttagtcgtagaaaaatgaagggttcatctcacgctttcttctaaaattattgataaacatatgtgtatctgagtcttt |
111 |
Q |
| |
|
|||||| || ||||||||||||||||| ||||| || |||||||||||||||| |||||||||| || ||| |||||||| |
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|
| T |
25904483 |
ttcttaatcatagaaaaatgaagggtttatctcccgttttcttctaaaattatcaataaacatatctgcatcagagtcttt |
25904563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1341 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1341
Description:
Target: scaffold1341; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 1497 - 1557
Alignment:
| Q |
136 |
ataattttggagatccctttgtgtgcatcctatattttcataacctccaacttgttctttc |
196 |
Q |
| |
|
||||||||| |||||| |||| |||||||| | |||||||||||| |||| |||||||||| |
|
|
| T |
1497 |
ataattttgaagatccttttgcgtgcatccaacattttcataacccccaaattgttctttc |
1557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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