View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1039_low_3 (Length: 251)
Name: NF1039_low_3
Description: NF1039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1039_low_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 3607279 - 3607524
Alignment:
| Q |
10 |
ccacagaggcaaaatcgatttacactgtcgcagaagctactattcctagcttctattggaatccgattttaaaag----aattgatttttcaaaaaacac |
105 |
Q |
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| T |
3607279 |
ccacacaggcaaaatcgatttacactgccgcagaagctactattcctaacttctattggaatccgattttaaaagccagaattgatttttcaaaaaacac |
3607378 |
T |
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| Q |
106 |
ccgaacaaatatttggtaaagcaaactcacttttacacttgcaaacgtacgtctaccataacgtgcaaccaaacagccacttcattgcaaacgttccata |
205 |
Q |
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| T |
3607379 |
ccaaacaaatatttggtaaagcaaactcacttttacacttgcaaacgtacgtctaccataacgtgcaaccaaacggccacttcattgcaaacgttccata |
3607478 |
T |
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| Q |
206 |
ttgttaaacgcacgtcacaataatagacacagtagaaataaggtat |
251 |
Q |
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| T |
3607479 |
ttgttaaacgcacgtcacaataatagacacggtagaaatagggtat |
3607524 |
T |
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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 187
Target Start/End: Complemental strand, 7766371 - 7766264
Alignment:
| Q |
85 |
aattgatttttcaaaaaacacccgaacaaatatttggtaaagcaaactcacttttacacttgcaaacgtacgtctacca-----taacgtgcaaccaaac |
179 |
Q |
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||||||||||||||||||||||| |||| |||||| |||||| |||||||||||| | ||||||||||||||||||||| ||||| |||||||||| |
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| T |
7766371 |
aattgatttttcaaaaaacacccaaacacatatttagtaaagaaaactcacttttccccttgcaaacgtacgtctaccacattgtaacgggcaaccaaac |
7766272 |
T |
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| Q |
180 |
agccactt |
187 |
Q |
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| T |
7766271 |
agccactt |
7766264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 37037262 - 37037314
Alignment:
| Q |
19 |
caaaatcgatttacactgtcgcagaagctactattcctagcttctattggaat |
71 |
Q |
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| T |
37037262 |
caaaatcgatttacaccgtcgtagaagttactatttgtagcttcaattggaat |
37037314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 20672870 - 20672818
Alignment:
| Q |
19 |
caaaatcgatttacactgtcgcagaagctactattcctagcttctattggaat |
71 |
Q |
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| T |
20672870 |
caaaatcgatttacaccgtcgtagaagctactatttgtagcttcaattggaat |
20672818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 8384848 - 8384896
Alignment:
| Q |
19 |
caaaatcgatttacactgtcgcagaagctactattcctagcttctattg |
67 |
Q |
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| T |
8384848 |
caaaatcaatttacactgtcgtagaagctactatttgtagcttcaattg |
8384896 |
T |
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