View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10400_3 (Length: 460)
Name: NF10400_3
Description: NF10400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10400_3 |
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Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 40958182 - 40957737
Alignment:
| Q |
1 |
agttcacccaaacgttgaatggttttctgaacaagctcatcaatttctttttgtttatcgtccttgtagtccttatcagttagattccacaatttcattg |
100 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40958182 |
agttcacccaaacgttgaatggttttcagaacaagctcatcaatttctttttgtttatcgtccttgtagtccttatcagttagattccacaatttcattg |
40958083 |
T |
|
| Q |
101 |
tttctatgtcataaaccttctgcaccacaaacccgggatgctgcttacgatttggaagttgtttgtgtatgggaacaaaatgcaccacacacgtatgctt |
200 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40958082 |
tttctatgtcatacaccttctgcaccacaaacccgggatgctgcttacgatttggaagttgtttgtgtatgggaacaaaatgcaccacacacgtatgctt |
40957983 |
T |
|
| Q |
201 |
aacagattctgcaggaacagcgtcttggtggaaactataatataactctctcgtctcatttgattgccaggtaccacctccttttttctctgctcctcca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
40957982 |
aacagattctgcaggaacagcgtcttggtggaaactataatataactctctcgtctcatttgattgccaggtaccacctccttttttctctg---cttca |
40957886 |
T |
|
| Q |
301 |
tcatggacggtaaaaccactgccctgtgatcattaaggtgtcattcggggattgtgtaatgtcctgacagaaaaacatctccggaatcagaaaattgaaa |
400 |
Q |
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| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40957885 |
t-atggacggtaaaaccactgacctgtgatcattaaggtgtcattgggggattgtgtaatgtcctgacagaaaaacatctccggaatcagaaaattgaaa |
40957787 |
T |
|
| Q |
401 |
agcataaaactctatgtttcatgaaagaggaagaaatagcaccctctctg |
450 |
Q |
| |
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| T |
40957786 |
agcataaaactctatgtttcatgaaagaggaagaaatagcaccctctctg |
40957737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 40945189 - 40944861
Alignment:
| Q |
1 |
agttcacccaaacgttgaatggttttctgaacaagctcatcaatttctttttgtttatcgtccttgtagtccttatcagttagattccacaatttcattg |
100 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||||||||| ||| |||| ||| | |||||||||||||||| ||||||| ||||| | |
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| T |
40945189 |
agttcacccaaccgttgacgagttttctgaacaagctcatcaatttcttgttgattattgtcttgatagtccttatcagttaatttccacagtttcaatt |
40945090 |
T |
|
| Q |
101 |
tttctatgtcataaaccttctgcaccacaaacccgggatgctgcttacgatttggaagttgtttgtgtatgggaacaaaatgcaccacacacgtatgctt |
200 |
Q |
| |
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||| ||||||| ||||||||||| | ||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||| ||||| | |
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| T |
40945089 |
catctgtgtcatacaccttctgcactatgaacccgggatgtaccttacgatttggaagctgtttgtgtatggggacaaaatgcaccacacacttatgcat |
40944990 |
T |
|
| Q |
201 |
aacagattctgcaggaacagcgtcttggtggaaactataatataactctctcgtctcatttgattgccaggtaccacctccttttttctctgctcctcca |
300 |
Q |
| |
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|||||||||||||||||| | ||| |||||||||||||| | | |||||| || ||| ||||||||| |||||||||| ||||| |||||| | | |
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| T |
40944989 |
aacagattctgcaggaacctcatctcggtggaaactataaaacagctctctggtgtcaacggattgccagctaccacctccctttttttctgcttc---a |
40944893 |
T |
|
| Q |
301 |
tcatggacggtaaaaccactgccctgtgatcat |
333 |
Q |
| |
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|| ||||||||| |||||||||||||||||||| |
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| T |
40944892 |
tc-tggacggtagaaccactgccctgtgatcat |
40944861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 3 - 252
Target Start/End: Original strand, 22508020 - 22508269
Alignment:
| Q |
3 |
ttcacccaaacgttgaatggttttctgaacaagctcatcaatttctttttgtttatcgtccttgtagtccttatcagttagattccacaatttcattgtt |
102 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | ||| ||||||| ||| | || ||| | |||| |||||||||||| ||||| |||||| || | |
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| T |
22508020 |
ttcacccaaacgttgaatagttttctgaacaaggttatccatttcttgttgctgattgtcgtcgtagaccttatcagttaaattccttaatttcttttct |
22508119 |
T |
|
| Q |
103 |
tctatgtcataaaccttctgcaccacaaacccgggatgctgcttacgatttggaagttgtttgtgtatgggaacaaaatgcaccacacacgtatgcttaa |
202 |
Q |
| |
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| | ||| ||| ||||| ||||| | ||||| ||| || ||||| ||||||||| |||||||| |||| ||||| ||| |||| |||||| ||| |
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| T |
22508120 |
tttgtgttatacaccttttgcacaatgaacccaggaacctccttacttgttggaagttttttgtgtaccggaatgaaatgaaccgcacatgtatgcataa |
22508219 |
T |
|
| Q |
203 |
cagattctgcaggaacagcgtcttggtggaaactataatataactctctc |
252 |
Q |
| |
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|| |||||| |||||| | | |||||||||||||||| ||||||||||| |
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| T |
22508220 |
cattttctgccggaacaacatattggtggaaactataaaataactctctc |
22508269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 2665327 - 2665409
Alignment:
| Q |
136 |
ggatgctgcttacgatttggaagttgtttgtgtatgggaacaaaatgcaccacacacgtatgcttaacagattctgcaggaac |
218 |
Q |
| |
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||||| |||||||| || |||| ||||||| | ||| |||||||||||||| ||| ||||| ||||||| ||||||||||| |
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| T |
2665327 |
ggatgttgcttacgtttcggaaactgtttgttcaagggcacaaaatgcaccacgcacttatgcataacagactctgcaggaac |
2665409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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