View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10400_4 (Length: 370)

Name: NF10400_4
Description: NF10400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10400_4
NF10400_4
[»] chr5 (15 HSPs)
chr5 (4-227)||(37439639-37439860)
chr5 (4-123)||(37434382-37434500)
chr5 (125-227)||(37701309-37701409)
chr5 (274-365)||(41966065-41966156)
chr5 (4-156)||(37402368-37402520)
chr5 (4-156)||(37531738-37531890)
chr5 (4-156)||(37592842-37592994)
chr5 (4-156)||(37695233-37695385)
chr5 (4-73)||(37701410-37701479)
chr5 (12-117)||(37394264-37394368)
chr5 (4-156)||(37638384-37638536)
chr5 (4-156)||(37710145-37710297)
chr5 (1-133)||(37427715-37427843)
chr5 (4-116)||(37822583-37822694)
chr5 (245-278)||(37701257-37701290)
[»] chr3 (1 HSPs)
chr3 (276-365)||(1227450-1227538)
[»] chr4 (1 HSPs)
chr4 (4-156)||(16844366-16844518)


Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 37439860 - 37439639
Alignment:
Q  4 caatattcgggttgctgttgggatataatgtattctttttcactggaaaacctcaatggcttcttagacttgttgagcatacatttaacattaagactga 103  Q
    |||||||||||||||| |||||||||||| ||||||| ||||||||||||||| |||| |||||||||||||||| ||||||||||||||| ||||||||    
T  37439860 caatattcgggttgctattgggatataatctattcttcttcactggaaaacctgaatgacttcttagacttgttg-gcatacatttaacat-aagactga 37439763  T
Q  104 aaagaacaaacaattgagtccgtgcaaatcgccgagaatgaattaatttgatgcaagtctttaaaaaatatagatacggttgcttgtactttgaacttct 203  Q
    |||||||||||||||||  || |||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  37439762 aaagaacaaacaattgatcccttgcaaatcacatagaatgaattaatttgatgcaagtctttaaaaaatatagatacggttgtttgtaatttgaacttct 37439663  T
Q  204 ctgtttaagtaatgtagtcttata 227  Q
    |||||| |||||||||||||||||    
T  37439662 ctgtttgagtaatgtagtcttata 37439639  T

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Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 4 - 123
Target Start/End: Complemental strand, 37434500 - 37434382
Alignment:
Q  4 caatattcgggttgctgttgggatataatgtattctttttcactggaaaacctcaatggcttcttagacttgttgagcatacatttaacattaagactga 103  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| |||    
T  37434500 caatatttgggttgctgttgggatataatgtattcttcttcactggaaaaccccaatggcttcttagacttgttgagcatacgtttaaca-taagaatga 37434402  T
Q  104 aaagaacaaacaattgagtc 123  Q
    ||||||||||||||||||||    
T  37434401 aaagaacaaacaattgagtc 37434382  T

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Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 125 - 227
Target Start/End: Complemental strand, 37701409 - 37701309
Alignment:
Q  125 gtgcaaatcgccgagaatgaattaatttgatgcaagtctttaaaaaatatagatacggttgcttgtactttgaacttctctgtttaagtaatgtagtctt 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||    
T  37701409 gtgcaaatcgccgagaatgaattaatttgatgcaagtctttaaaaaatatagatacggttgcttgtactttgaacttctc--tttgagtaatgtagtctt 37701312  T
Q  225 ata 227  Q
    |||    
T  37701311 ata 37701309  T

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Target: chr5; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 274 - 365
Target Start/End: Original strand, 41966065 - 41966156
Alignment:
Q  274 attataatcaagatactaaggattccataccacatcttagcaaaagaaatgaagtccattcaagccttattccttgtcttctctctgctcct 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41966065 attataatcaagatactaaggattccataccacatcttagcaaaagaaatgaagtccattcaagccttattccttgtcttctctcttctcct 41966156  T

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Target: chr5; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 4 - 156
Target Start/End: Original strand, 37402368 - 37402520
Alignment:
Q  4 caatattcgggttgctgttgggatataatgtattctttttcactggaaaacctcaatggcttcttagacttgttgagcatacatttaacattaagactga 103  Q
    |||||| |||||| || |||||||||||||||||||| |||||||| ||||||||||||||| ||||| |||||||  | |  ||||||| |||||||||    
T  37402368 caatatccgggttcctcttgggatataatgtattcttcttcactggtaaacctcaatggcttgttagaattgttgaaaacatgtttaaca-taagactga 37402466  T
Q  104 aaagaacaaacaattgagtccgtgcaaatcgccg-agaatgaattaatttgatg 156  Q
    |||||||||||||  ||  | ||||||||||| | |||||||||||||||||||    
T  37402467 aaagaacaaacaacagatactgtgcaaatcgcagaagaatgaattaatttgatg 37402520  T

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Target: chr5; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 4 - 156
Target Start/End: Complemental strand, 37531890 - 37531738
Alignment:
Q  4 caatattcgggttgctgttgggatataatgtattctttttcactggaaaacctcaatggcttcttagacttgttgagcatacatttaacattaagactga 103  Q
    |||||| |||||| || |||||||||||||||||||| |||||||| ||||||||||||||| ||||| |||||||  | |  ||||||| |||||||||    
T  37531890 caatatccgggttcctcttgggatataatgtattcttcttcactggtaaacctcaatggcttgttagaattgttgaaaacatgtttaaca-taagactga 37531792  T
Q  104 aaagaacaaacaattgagtccgtgcaaatcgccg-agaatgaattaatttgatg 156  Q
    |||||||||||||  ||  | ||||||||||| | |||||||||||||||||||    
T  37531791 aaagaacaaacaacagatactgtgcaaatcgcagaagaatgaattaatttgatg 37531738  T

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Target: chr5; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 4 - 156
Target Start/End: Complemental strand, 37592994 - 37592842
Alignment:
Q  4 caatattcgggttgctgttgggatataatgtattctttttcactggaaaacctcaatggcttcttagacttgttgagcatacatttaacattaagactga 103  Q
    |||||| |||||| || |||||||||||||||||||| |||||||| ||||||||||||||| ||||| |||||||  | |  ||||||| |||||||||    
T  37592994 caatatccgggttcctcttgggatataatgtattcttcttcactggtaaacctcaatggcttgttagaattgttgaaaacatgtttaaca-taagactga 37592896  T
Q  104 aaagaacaaacaattgagtccgtgcaaatcgccg-agaatgaattaatttgatg 156  Q
    |||||||||||||  ||  | ||||||||||| | |||||||||||||||||||    
T  37592895 aaagaacaaacaacagatactgtgcaaatcgcagaagaatgaattaatttgatg 37592842  T

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Target: chr5; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 4 - 156
Target Start/End: Complemental strand, 37695385 - 37695233
Alignment:
Q  4 caatattcgggttgctgttgggatataatgtattctttttcactggaaaacctcaatggcttcttagacttgttgagcatacatttaacattaagactga 103  Q
    |||||| |||||| || |||||||||||||||||||| |||||||| ||||||||||||||| ||||| |||||||  | |  ||||||| |||||||||    
T  37695385 caatatccgggttcctcttgggatataatgtattcttcttcactggtaaacctcaatggcttgttagaattgttgaaaacatgtttaaca-taagactga 37695287  T
Q  104 aaagaacaaacaattgagtccgtgcaaatcgccg-agaatgaattaatttgatg 156  Q
    |||||||||||||  ||  | ||||||||||| | |||||||||||||||||||    
T  37695286 aaagaacaaacaacagatactgtgcaaatcgcagaagaatgaattaatttgatg 37695233  T

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Target: chr5; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 37701479 - 37701410
Alignment:
Q  4 caatattcgggttgctgttgggatataatgtattctttttcactggaaaacctcaatggcttcttagact 73  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37701479 caatattcgggttgctcttgggatataatgtattcttcttcactggaaaacctcaatggcttcttagact 37701410  T

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Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 37394264 - 37394368
Alignment:
Q  12 gggttgctgttgggatataatgtattctttttcactggaaaacctcaatggcttcttagacttgttgagcatacatttaacattaagactgaaaagaaca 111  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||   |||| ||||||  |||  ||||||| ||||| |||||||| ||    
T  37394264 gggttgctgttgggatataatgtattcttcttcactggaaaaccccaatggcttgcaagacatgttgaaaatatgtttaaca-taagattgaaaagatca 37394362  T
Q  112 aacaat 117  Q
    ||||||    
T  37394363 aacaat 37394368  T

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Target: chr5; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 4 - 156
Target Start/End: Complemental strand, 37638536 - 37638384
Alignment:
Q  4 caatattcgggttgctgttgggatataatgtattctttttcactggaaaacctcaatggcttcttagacttgttgagcatacatttaacattaagactga 103  Q
    |||||||||||||||| |||||||||||||||||||| |||||||| |||||  ||||||||   |||| |||||| ||||  ||| ||| ||||| |||    
T  37638536 caatattcgggttgctattgggatataatgtattcttcttcactggtaaacccgaatggcttgcaagacatgttgaacatatgtttgaca-taagattga 37638438  T
Q  104 aaagaacaaacaattgagtccgtgcaaatcgccg-agaatgaattaatttgatg 156  Q
    ||||||| |||||  ||| |   ||||||||| | |||||||||||||| ||||    
T  37638437 aaagaacgaacaacagagccatcgcaaatcgcagaagaatgaattaattggatg 37638384  T

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Target: chr5; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 4 - 156
Target Start/End: Complemental strand, 37710297 - 37710145
Alignment:
Q  4 caatattcgggttgctgttgggatataatgtattctttttcactggaaaacctcaatggcttcttagacttgttgagcatacatttaacattaagactga 103  Q
    |||||||||||||||| || ||||||||||||||||| ||||| || |||||  |||||||| | |||| |||||| ||||  ||| ||| ||||| |||    
T  37710297 caatattcgggttgctattcggatataatgtattcttcttcaccggtaaacccgaatggcttgtaagacatgttgaacatatgtttgaca-taagattga 37710199  T
Q  104 aaagaacaaacaattgagtccgtgcaaatcgccg-agaatgaattaatttgatg 156  Q
    |||||||||||||  ||| |   ||||||||| | |||||||||||||| ||||    
T  37710198 aaagaacaaacaacagagccatcgcaaatcgcagaagaatgaattaattggatg 37710145  T

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Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 37427843 - 37427715
Alignment:
Q  1 ggacaatattcgggttgctgttgggatataatgtattctttttcactggaaaacctcaatggcttcttagacttgttgagcatacatttaacattaagac 100  Q
    |||||||||| ||| || | |||||||||| |||| ||||   || ||| |||||  ||||| || |||||||| ||||||| ||||||||||| ||||     
T  37427843 ggacaatatttgggatgatcttgggatatattgtactctt---cattgggaaaccataatggtttgttagactttttgagcaaacatttaacat-aagat 37427748  T
Q  101 tgaaaagaacaaacaattgagtccgtgcaaatc 133  Q
    ||||||||||||||| | ||| |||||||||||    
T  37427747 tgaaaagaacaaacactagagcccgtgcaaatc 37427715  T

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Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 37822694 - 37822583
Alignment:
Q  4 caatattcgggttgctgttgggatataatgtattctttttcactggaaaacctcaatggcttcttagacttgttgagcatacatttaacattaagactga 103  Q
    |||| ||||||||||| || ||||||||||||||||| |||||||| |||||  ||||||||   |||| |||||| ||||  ||| ||| ||||| |||    
T  37822694 caatcttcgggttgctattcggatataatgtattcttcttcactggtaaacccgaatggcttgcaagacatgttgaacatatgtttgaca-taagattga 37822596  T
Q  104 aaagaacaaacaa 116  Q
    ||||||| |||||    
T  37822595 aaagaacgaacaa 37822583  T

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Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 37701290 - 37701257
Alignment:
Q  245 gacagagtagtcttatatcttttaaaattattat 278  Q
    ||||||||||||||||||||||||||||||||||    
T  37701290 gacagagtagtcttatatcttttaaaattattat 37701257  T

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Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 276 - 365
Target Start/End: Original strand, 1227450 - 1227538
Alignment:
Q  276 tataatcaagatactaaggattccataccacatcttagcaaaagaaatgaagtccattcaagccttattccttgtcttctctctgctcct 365  Q
    ||||||| ||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1227450 tataatctagatactaagg-ttcaacaccacatcttagcaaaagaaatgaagtccattcaagccttattccttgtcttctctcttctcct 1227538  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 156
Target Start/End: Original strand, 16844366 - 16844518
Alignment:
Q  4 caatattcgggttgctgttgggatataatgtattctttttcactggaaaacctcaatggcttcttagacttgttgagcatacatttaacattaagactga 103  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| |||   |||| |||||| | ||  ||||||| ||||| |||    
T  16844366 caatattcgggttgctcttgggatataatgtattcttcttcactggaaaaccccaatgccttgcaagacatgttgaacgtatgtttaaca-taagattga 16844464  T
Q  104 aaagaacaaacaattgagtccgtgcaaatcgccg-agaatgaattaatttgatg 156  Q
    ||||||||| |||  |||     ||||||||||| |||||||||||||| ||||    
T  16844465 aaagaacaatcaacagagcaaccgcaaatcgccgaagaatgaattaattggatg 16844518  T

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