View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10400_6 (Length: 340)
Name: NF10400_6
Description: NF10400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10400_6 |
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Alignment Details
Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 195 - 335
Target Start/End: Complemental strand, 7686686 - 7686546
Alignment:
| Q |
195 |
tatttctgtagaggaaaatactatctgcaaagtggaacattgatttcattcacgtaaactagccataataattatttcagatttcatatatatcctttga |
294 |
Q |
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| T |
7686686 |
tatttctgtagaggaaaatactatctgcaaagtggaacattgatttcattcacgtagactagccataataattatttcagattccatatatatcctttga |
7686587 |
T |
|
| Q |
295 |
aatcaataatggtgtatatttttcttatgattcatctcact |
335 |
Q |
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| T |
7686586 |
aatcaataatggtgtatatttttcttatgattcatttcact |
7686546 |
T |
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Target: chr7; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 7686903 - 7686720
Alignment:
| Q |
1 |
ataatatagttaacaaaaaaggacaatacattgtagacgctggccatctagaaattataaatttataataannnnnnnnnngtttaaataagttttagtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||| |
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| T |
7686903 |
ataatatagttaacaaaaaaggacaatacattgtagacgctggcaatctagaaattataa--------taattttttttttgtttaaataagttttagtc |
7686812 |
T |
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| Q |
101 |
tatatacaattacgatctttcaagtttaaacctttattaaattctattcgctttaattttagtccattatttgcttttcacgtccttaaata |
192 |
Q |
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| T |
7686811 |
tatatacaattacgatctttcaagtttaaacctttaataaattctattcactttaattttagtccattatttgcttttcacgtccttaaata |
7686720 |
T |
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