View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10400_7 (Length: 326)
Name: NF10400_7
Description: NF10400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10400_7 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 315
Target Start/End: Original strand, 11343424 - 11343726
Alignment:
| Q |
16 |
atagtaagaataaacaataatttaacaacttcgaagcttcaatttcatagatttttgcatctcatctctttcatacttaatttgttatcaaaattaataa |
115 |
Q |
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| T |
11343424 |
atagtaagaataaacaataatttaacaacttagaagcttcaatttcatagatttttgcatctcatctctttcatacttaatttgttatcaaaattaataa |
11343523 |
T |
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| Q |
116 |
ttttaagactcaactccgattgttaaaactcaacaacatcctataatttgagagaaggaattatggaagagagaaggaaaggacaaggcaataatttgag |
215 |
Q |
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| T |
11343524 |
ttttaagactcaactccgattgttaaaactcaacatcattctataatttgagagaaggaattatggaagagagaaggaaaggacaagccaataatttgag |
11343623 |
T |
|
| Q |
216 |
agatattataagtggatgaaaaacaaggggaagttgcaga---aagaagaagaagaataggtgtagttgttggaggctgatggtgaaaagaagagaaatg |
312 |
Q |
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| T |
11343624 |
agatattataagtggatgaaaaacaaggggaagttgcagaaagaagaagaagaagaataggtgtagttgttggaggctgatggtgaaaagaagagaaatg |
11343723 |
T |
|
| Q |
313 |
ctg |
315 |
Q |
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||| |
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| T |
11343724 |
ctg |
11343726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 20 - 311
Target Start/End: Original strand, 38677296 - 38677584
Alignment:
| Q |
20 |
taagaataaacaataatttaacaacttcgaagcttcaatttcatagatttttgcatctcatctctttcatacttaatttgttatcaaaattaataatttt |
119 |
Q |
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|||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38677296 |
taagaataaataataatttaacaatttagaagcttcaatttcatagatttttgcatctcatctctttcatacttaatttgttatcaaaattaataatttt |
38677395 |
T |
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| Q |
120 |
aagactcaactccgattgttaaaactcaacaacatcctataatttgagagaaggaattatggaagagagaaggaaaggacaaggcaataatttgagagat |
219 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38677396 |
aagactcaactccgattgttaaaactcaacaacattctataatttgagagaaggaattatggaagagagaaggaaaggacaagccaataatttgagagat |
38677495 |
T |
|
| Q |
220 |
attataagtggatgaaaaacaaggggaagttgcagaaagaagaagaagaataggtgtagttgttggaggctgatggtgaaaagaagagaaat |
311 |
Q |
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| T |
38677496 |
attataagtggatgaaaaacaaggggaagttgc---aaaaagaagaagaataggtgtagttgttggtagctgatggtaaaaagaagagaaat |
38677584 |
T |
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