View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10401_11 (Length: 334)

Name: NF10401_11
Description: NF10401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10401_11
NF10401_11
[»] chr7 (3 HSPs)
chr7 (13-151)||(39321475-39321613)
chr7 (235-292)||(46152238-46152295)
chr7 (215-267)||(35116922-35116974)
[»] chr1 (1 HSPs)
chr1 (215-271)||(32161579-32161635)
[»] chr6 (1 HSPs)
chr6 (213-292)||(342984-343066)
[»] chr8 (3 HSPs)
chr8 (260-334)||(38813716-38813790)
chr8 (206-292)||(13244707-13244795)
chr8 (240-330)||(36178448-36178540)
[»] chr3 (2 HSPs)
chr3 (217-292)||(15985279-15985356)
chr3 (223-292)||(31752692-31752763)
[»] chr4 (1 HSPs)
chr4 (215-292)||(4197196-4197275)
[»] chr2 (1 HSPs)
chr2 (215-292)||(12880121-12880200)


Alignment Details
Target: chr7 (Bit Score: 119; Significance: 9e-61; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 39321475 - 39321613
Alignment:
Q  13 aatatcacaaatgtcaccaacattgaggatatgtggcttgcaacatattaatcatgtgtagaacaatacaaaatatgttaaataatttgggttgcatata 112  Q
    ||||||| |||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39321475 aatatcataaatgtcaccaacattaaggatatgtggctcgcagcatattaatcatgtgtagaacaatacaaaatatgttaaataatttgggttgcatata 39321574  T
Q  113 aatttataggaaaatgtaatggtatattttttccgtctc 151  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  39321575 aatttataggaaaatgtaatggtatactttttccgtctc 39321613  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 46152238 - 46152295
Alignment:
Q  235 gaaagaattgataaattttatgcagaaaaatttatttttatatttcaatgtgttgaat 292  Q
    |||| |||||||||| |||||| ||||||||| ||||| | |||||||||||||||||    
T  46152238 gaaataattgataaactttatgtagaaaaattcattttcaaatttcaatgtgttgaat 46152295  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 35116974 - 35116922
Alignment:
Q  215 ttgttaatgattcaaaacacgaaagaattgataaattttatgcagaaaaattt 267  Q
    ||||||| ||||||||| | |||| |||| |||||||||||| ||||||||||    
T  35116974 ttgttaaggattcaaaaaaggaaataatttataaattttatgtagaaaaattt 35116922  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 32161635 - 32161579
Alignment:
Q  215 ttgttaatgattcaaaacacgaaagaattgataaattttatgcagaaaaatttattt 271  Q
    |||||||||||||||||   |||| ||||||||||||||||| ||||||| ||||||    
T  32161635 ttgttaatgattcaaaaatagaaataattgataaattttatgtagaaaaagttattt 32161579  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 343066 - 342984
Alignment:
Q  213 atttgttaatgattcaaaacac-gaaagaattgataaattttatgcagaaaaatttattttt--atatttcaatgtgttgaat 292  Q
    ||||||||| ||||||||| |  |||| ||||||||| ||||||||| ||||| ||||||||  || ||||||||||||||||    
T  343066 atttgttaaagattcaaaaaatagaaacaattgataacttttatgcataaaaagttattttttaatgtttcaatgtgttgaat 342984  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 38813790 - 38813716
Alignment:
Q  260 aaaaatttatttttatatttcaatgtgttgaattcacgattctcaagattcaattttcattttgaacttcttaac 334  Q
    |||||||  |||| || ||||||| |||||||| ||| |||| ||||||  | ||||||||||||||||||||||    
T  38813790 aaaaattctttttaatgtttcaatatgttgaatacacaattcccaagataaatttttcattttgaacttcttaac 38813716  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 292
Target Start/End: Complemental strand, 13244795 - 13244707
Alignment:
Q  206 taaagatatttgttaatgattcaaaacacgaaagaattgataaattttatgcagaaaaatttattttt--atatttcaatgtgttgaat 292  Q
    |||||||| |||||||||||||||||   |||| ||||||||| ||||||| ||| ||| || |||||  |||||||||| | ||||||    
T  13244795 taaagatacttgttaatgattcaaaaatagaaacaattgataacttttatgtagacaaaattgttttttgatatttcaatatattgaat 13244707  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 330
Target Start/End: Complemental strand, 36178540 - 36178448
Alignment:
Q  240 aattgataaattttatgcagaaaaatttattttt--atatttcaatgtgttgaattcacgattctcaagattcaattttcattttgaacttct 330  Q
    |||||||||||||||||||||||||  |||||||   | ||||||||| |||||| ||| ||| | |||||  |||||||| ||| |||||||    
T  36178540 aattgataaattttatgcagaaaaaaatattttttgttgtttcaatgtcttgaatgcacaatttttaagataaaattttcactttaaacttct 36178448  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 292
Target Start/End: Complemental strand, 15985356 - 15985279
Alignment:
Q  217 gttaatgattcaaaacacgaaagaattgataaattttatgcagaaaaattta--tttttatatttcaatgtgttgaat 292  Q
    ||||| ||||||||| | |||| |||||||||||||||||   ||||| |||  |||| |||||||||||||||||||    
T  15985356 gttaaagattcaaaaaaggaaataattgataaattttatgttaaaaaaattactttttaatatttcaatgtgttgaat 15985279  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 292
Target Start/End: Original strand, 31752692 - 31752763
Alignment:
Q  223 gattcaaaacacgaaagaattgataaattttatgcagaaaaattta--tttttatatttcaatgtgttgaat 292  Q
    ||||||||| | |||| |||||||||||||||||  ||||||| ||  |||| |||||| ||||||||||||    
T  31752692 gattcaaaaaaggaaataattgataaattttatgttgaaaaatgtactttttaatattttaatgtgttgaat 31752763  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 292
Target Start/End: Original strand, 4197196 - 4197275
Alignment:
Q  215 ttgttaatgattcaaaacacgaaagaattgataaattttatgcagaaaaatttatttttata--tttcaatgtgttgaat 292  Q
    ||||||| ||||||||| | ||||  ||| |||||||||||| ||||||| |||||||| ||  |||||| |||||||||    
T  4197196 ttgttaaggattcaaaagaggaaatgatttataaattttatgtagaaaaagttatttttttaagtttcaaggtgttgaat 4197275  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 292
Target Start/End: Complemental strand, 12880200 - 12880121
Alignment:
Q  215 ttgttaatgattcaaaacacgaaagaattgataaattttatgcagaaaaatttattttt--atatttcaatgtgttgaat 292  Q
    ||||||| |||||||||   |||| ||||||||| ||||||| ||||||| ||| ||||  | |||||||||||||||||    
T  12880200 ttgttaaggattcaaaaatggaaataattgataagttttatgtagaaaaaattactttttaaaatttcaatgtgttgaat 12880121  T

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