View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10401_12 (Length: 334)

Name: NF10401_12
Description: NF10401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10401_12
NF10401_12
[»] chr4 (3 HSPs)
chr4 (70-256)||(17232529-17232715)
chr4 (260-334)||(17328394-17328468)
chr4 (62-154)||(30861136-30861228)
[»] chr6 (2 HSPs)
chr6 (80-247)||(5028689-5028856)
chr6 (63-247)||(7595277-7595460)
[»] chr1 (3 HSPs)
chr1 (70-193)||(2869338-2869461)
chr1 (202-256)||(17978079-17978133)
chr1 (65-103)||(40741339-40741377)
[»] chr5 (1 HSPs)
chr5 (99-217)||(11930026-11930144)
[»] chr7 (1 HSPs)
chr7 (61-147)||(12265917-12266003)


Alignment Details
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 70 - 256
Target Start/End: Original strand, 17232529 - 17232715
Alignment:
Q  70 gatctcacgctgtaactgcgttaacgcagtaacagctacgggtcgttcaatcataaatgaaaggttgagattaaaactgtgtgaaactgcactatatgaa 169  Q
    |||| ||||| |||||| |||||||  ||||||||||||||  ||  | |||| |||||||| ||| |||||||||||||||||||||||||| | ||||    
T  17232529 gatcccacgccgtaactacgttaacatagtaacagctacggaccgaccgatcaaaaatgaaaagttaagattaaaactgtgtgaaactgcactgtgtgaa 17232628  T
Q  170 tttgaactgtaagattgtttttcaatggctatgattgtttactgcgtgaaattacgtggcgtagttacagcaggcaattctggtccg 256  Q
    ||| |||||| ||||| ||||||||||||| ||||||| || || || ||  | || || | |||||||||||||||| ||||||||    
T  17232629 tttaaactgttagattatttttcaatggctgtgattgtctattgtgtaaagctgcgcggagcagttacagcaggcaatcctggtccg 17232715  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 17328394 - 17328468
Alignment:
Q  260 ttagaacacattgtcttatctttcttgaagagtgatgagccaacacataaataaggaaggacattcctattggtt 334  Q
    |||||||||| | |||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  17328394 ttagaacacactatcttctctttcttgaagagcaatgagccaacacataaataaggaaggacattcctattggtt 17328468  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 62 - 154
Target Start/End: Complemental strand, 30861228 - 30861136
Alignment:
Q  62 tggaactagatctcacgctgtaactgcgttaacgcagtaacagctacgggtcgttcaatcataaatgaaaggttgagattaaaactgtgtgaa 154  Q
    ||||||| |||| |||| ||||| |||||||||||||||||| ||||||| |||   |||| ||||||||||||||||| |||||||||||||    
T  30861228 tggaactggatcccacgatgtaattgcgttaacgcagtaacaactacgggccgtcagatcaaaaatgaaaggttgagatcaaaactgtgtgaa 30861136  T

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Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 80 - 247
Target Start/End: Original strand, 5028689 - 5028856
Alignment:
Q  80 tgtaactgcgttaacgcagtaacagctacgggtcgttcaatcataaatgaaaggttgagattaaaactgtgtgaaactgcactatatgaatttgaactgt 179  Q
    ||||||||||||| |||||||||||||||| | ||| | || | ||||||||||||| ||||| || ||||||| |||| ||| | ||||||||||||||    
T  5028689 tgtaactgcgttagcgcagtaacagctacgagccgtccgataagaaatgaaaggttgggattagaaatgtgtgatactgtactgtgtgaatttgaactgt 5028788  T
Q  180 aagattgtttttcaatggctatgattgtttactgcgtgaaattacgtggcgtagttacagcaggcaat 247  Q
     ||||||||||||| ||  | ||||||| |||||||||||  | | ||| | ||||||||||||||||    
T  5028789 tagattgtttttcagtgattgtgattgtctactgcgtgaacctgcatggagcagttacagcaggcaat 5028856  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 63 - 247
Target Start/End: Original strand, 7595277 - 7595460
Alignment:
Q  63 ggaactagatctcacgctgtaactgcgttaacgcagtaacagctacgggtcgttcaatcataaatgaaaggttgagattaaaactgtgtgaaactgcact 162  Q
    |||||| |||| |||||| ||||||||| |||||||||||| ||||    ||||| |||| |||||||||||||| ||||||| ||||||||| || |||    
T  7595277 ggaactggatcccacgctataactgcgtcaacgcagtaacaactactaaccgttcgatcaaaaatgaaaggttgaaattaaaaatgtgtgaaattg-act 7595375  T
Q  163 atatgaatttgaactgtaagattgtttttcaatggctatgattgtttactgcgtgaaattacgtggcgtagttacagcaggcaat 247  Q
     | |||||||||||| | | |||| |||||||||| | ||||||| |||||| |||||||| |||| | | ||||| ||||||||    
T  7595376 gtgtgaatttgaactattaaattggttttcaatggttgtgattgtctactgcatgaaattatgtggagcaattacaacaggcaat 7595460  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 70 - 193
Target Start/End: Complemental strand, 2869461 - 2869338
Alignment:
Q  70 gatctcacgctgtaactgcgttaacgcagtaacagctacgggtcgttcaatcataaatgaaaggttgagattaaaactgtgtgaaactgcactatatgaa 169  Q
    |||| |||| ||||||| |||||||||||||| ||||| |   ||| | |||| |||||||||||||||||||||||||||||||| ||||||||  | |    
T  2869461 gatcccacgttgtaactacgttaacgcagtaatagctatgaaccgtccgatcagaaatgaaaggttgagattaaaactgtgtgaaaatgcactatgagta 2869362  T
Q  170 tttgaactgtaagattgtttttca 193  Q
    |||||||||| |||||||||||||    
T  2869361 tttgaactgttagattgtttttca 2869338  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 256
Target Start/End: Complemental strand, 17978133 - 17978079
Alignment:
Q  202 gattgtttactgcgtgaaattacgtggcgtagttacagcaggcaattctggtccg 256  Q
    |||||| |||||||||||||| ||||| | |||||||||||| ||||| ||||||    
T  17978133 gattgtgtactgcgtgaaattgcgtggagcagttacagcaggaaattcaggtccg 17978079  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 103
Target Start/End: Original strand, 40741339 - 40741377
Alignment:
Q  65 aactagatctcacgctgtaactgcgttaacgcagtaaca 103  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  40741339 aactggatcccacgctgtaactgcgttaacgcagtaaca 40741377  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 217
Target Start/End: Original strand, 11930026 - 11930144
Alignment:
Q  99 taacagctacgggtcgttcaatcataaatgaaaggttgagattaaaactgtgtgaaactgcactatatgaatttgaactgtaagattgtttttcaatggc 198  Q
    ||||||||||||| ||| | ||   |||||||||||||||||||||| ||||| |||||||||| | |||||||||||||| ||||||||||| | ||||    
T  11930026 taacagctacgggccgtccgatatgaaatgaaaggttgagattaaaattgtgtcaaactgcactgtgtgaatttgaactgttagattgtttttgagtggc 11930125  T
Q  199 tatgattgtttactgcgtg 217  Q
    |  |||| | |||||||||    
T  11930126 tgagattttctactgcgtg 11930144  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 147
Target Start/End: Original strand, 12265917 - 12266003
Alignment:
Q  61 atggaactagatctcacgctgtaactgcgttaacgcagtaacagctacgggtcgttcaatcataaatgaaaggttgagattaaaact 147  Q
    |||||||| |||| |||| ||||||||||||||||||||| | |||| ||| ||| | |||| |||| || ||||||||| ||||||    
T  12265917 atggaactggatcccacgttgtaactgcgttaacgcagtacctgctatgggacgtccgatcagaaattaacggttgagatcaaaact 12266003  T

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