View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10401_14 (Length: 318)

Name: NF10401_14
Description: NF10401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10401_14
NF10401_14
[»] scaffold1652 (2 HSPs)
scaffold1652 (30-274)||(187-416)
scaffold1652 (101-316)||(177-380)
[»] scaffold0902 (6 HSPs)
scaffold0902 (101-274)||(3459-3632)
scaffold0902 (30-163)||(3477-3622)
scaffold0902 (41-91)||(3468-3518)
scaffold0902 (201-316)||(3495-3625)
scaffold0902 (120-159)||(3298-3337)
scaffold0902 (270-307)||(3597-3634)
[»] scaffold1176 (5 HSPs)
scaffold1176 (50-163)||(69-179)
scaffold1176 (214-316)||(59-161)
scaffold1176 (108-267)||(46-190)
scaffold1176 (41-91)||(138-188)
scaffold1176 (120-159)||(313-352)
[»] scaffold0002 (4 HSPs)
scaffold0002 (201-316)||(165205-165320)
scaffold0002 (30-163)||(165208-165338)
scaffold0002 (106-267)||(165203-165349)
scaffold0002 (41-91)||(165297-165347)
[»] chr6 (13 HSPs)
chr6 (30-163)||(14248388-14248518)
chr6 (201-316)||(14248406-14248521)
chr6 (106-267)||(14248377-14248523)
chr6 (213-307)||(14316977-14317071)
chr6 (50-163)||(14316950-14317060)
chr6 (41-91)||(14351646-14351696)
chr6 (108-165)||(14317026-14317083)
chr6 (41-91)||(14248379-14248429)
chr6 (201-266)||(14351645-14351710)
chr6 (120-159)||(14248242-14248281)
chr6 (41-90)||(14316942-14316991)
chr6 (108-165)||(14351653-14351710)
chr6 (208-256)||(14316950-14316998)
[»] chr4 (7 HSPs)
chr4 (196-274)||(37245107-37245185)
chr4 (108-159)||(37245129-37245180)
chr4 (41-91)||(37245116-37245166)
chr4 (41-79)||(37241922-37241960)
chr4 (183-252)||(37242112-37242181)
chr4 (193-253)||(37241922-37241982)
chr4 (280-316)||(37245143-37245179)
[»] scaffold1801 (1 HSPs)
scaffold1801 (120-159)||(200-239)


Alignment Details
Target: scaffold1652 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 30 - 274
Target Start/End: Original strand, 187 - 416
Alignment:
Q  30 ctgctgtcgccccatcgtcaatctctactcctccatctcaagcaccatcgcctacgatttcttctgctcttgctgcttctcctgctgtcgctccatcgtc 129  Q
    |||||||| | |||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  187 ctgctgtctctccatcgtcgatctctactcctccatctcaagtaccatcgcctacgatttcttctcctcctgctgcttctcctgctgtcgctccatcgtc 286  T
Q  130 gatctctacccctccatctcaagcaccatcgcctaccatatttactccctctgctgctcctcttgctgccactcctgctgtgactccatcgtcgatctct 229  Q
    |||||||||||||||||||||||||||||||||||| ||               | |||||||||||||| ||||||||||||||||||||||||| |||    
T  287 gatctctacccctccatctcaagcaccatcgcctacgat---------------ttctcctcttgctgccgctcctgctgtgactccatcgtcgatatct 371  T
Q  230 acacctccatctcaaacaccatcgcctacaatttctccttccgct 274  Q
    || |||||||||||| |||||| |||| | |||||||| ||||||    
T  372 actcctccatctcaagcaccatagcctgcgatttctccctccgct 416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 101 - 316
Target Start/End: Original strand, 177 - 380
Alignment:
Q  101 gctgcttctcctgctgtcgctccatcgtcgatctctacccctccatctcaagcaccatcgcctaccatatttactccctctgctgctcctcttgctgcca 200  Q
    |||||| ||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||| || |            || |||||| ||||||      
T  177 gctgctgctcctgctgtctctccatcgtcgatctctactcctccatctcaagtaccatcgcctacgattt------------cttctcctcctgctgctt 264  T
Q  201 ctcctgctgtgactccatcgtcgatctctacacctccatctcaaacaccatcgcctacaatttctccttccgctgctgttcctgctgtgactccatcgtc 300  Q
    ||||||||||  ||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||   ||||| | |||||||||||||||||||||    
T  265 ctcctgctgtcgctccatcgtcgatctctacccctccatctcaagcaccatcgcctacgatttctcctcttgctgccgctcctgctgtgactccatcgtc 364  T
Q  301 gatctctgatcctcca 316  Q
    ||| |||  |||||||    
T  365 gatatctactcctcca 380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902 (Bit Score: 126; Significance: 6e-65; HSPs: 6)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 101 - 274
Target Start/End: Complemental strand, 3632 - 3459
Alignment:
Q  101 gctgcttctcctgctgtcgctccatcgtcgatctctacccctccatctcaagcaccatcgcctaccatatttactccctctgctgctcctcttgctgcca 200  Q
    |||||| ||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  3632 gctgctgctcctgctgtcactccatcgtcgatctctatccctccaactcaagcaccatcgcctacaatttttactccctctgctgctcctcttgctgcca 3533  T
Q  201 ctcctgctgtgactccatcgtcgatctctacacctccatctcaaacaccatcgcctacaatttctccttccgct 274  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||| | |||||||| ||||||    
T  3532 ctcctgctgtgactccatcgtcgatctctactcctccatctcaagcaccaacgcctgcgatttctccctccgct 3459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 3622 - 3477
Alignment:
Q  30 ctgctgtcgccccatcgtcaatctctactcctccatctcaagcaccatcgcctacgattt------------cttctgctcttgctgcttctcctgctgt 117  Q
    |||||||| | |||||||| |||||||  |||||| ||||||||||||||||||| ||||            || || ||||||||||  ||||||||||    
T  3622 ctgctgtcactccatcgtcgatctctatccctccaactcaagcaccatcgcctacaatttttactccctctgctgctcctcttgctgccactcctgctgt 3523  T
Q  118 cgctccatcgtcgatctctacccctccatctcaagcaccatcgcct 163  Q
      ||||||||||||||||||| |||||||||||||||||| |||||    
T  3522 gactccatcgtcgatctctactcctccatctcaagcaccaacgcct 3477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 3518 - 3468
Alignment:
Q  41 ccatcgtcaatctctactcctccatctcaagcaccatcgcctacgatttct 91  Q
    |||||||| ||||||||||||||||||||||||||| ||||| ||||||||    
T  3518 ccatcgtcgatctctactcctccatctcaagcaccaacgcctgcgatttct 3468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 316
Target Start/End: Complemental strand, 3625 - 3495
Alignment:
Q  201 ctcctgctgtgactccatcgtcgatctctacacctccatctcaaacaccatcgcctacaatttctccttccgctgctgttcct---------------gc 285  Q
    |||||||||| |||||||||||||||||||  |||||| ||||| |||||||||||||||||| | || || |||||| ||||               ||    
T  3625 ctcctgctgtcactccatcgtcgatctctatccctccaactcaagcaccatcgcctacaatttttactccctctgctgctcctcttgctgccactcctgc 3526  T
Q  286 tgtgactccatcgtcgatctctgatcctcca 316  Q
    ||||||||||||||||||||||  |||||||    
T  3525 tgtgactccatcgtcgatctctactcctcca 3495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 159
Target Start/End: Complemental strand, 3337 - 3298
Alignment:
Q  120 ctccatcgtcgatctctacccctccatctcaagcaccatc 159  Q
    |||||||| |||||||||||||||||||| ||||||||||    
T  3337 ctccatcggcgatctctacccctccatctaaagcaccatc 3298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 307
Target Start/End: Complemental strand, 3634 - 3597
Alignment:
Q  270 ccgctgctgttcctgctgtgactccatcgtcgatctct 307  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  3634 ccgctgctgctcctgctgtcactccatcgtcgatctct 3597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 163
Target Start/End: Original strand, 69 - 179
Alignment:
Q  50 atctctactcctccatctcaagcaccatcgcctacgatttcttctgctcttgctgcttctcctgctgtcgctccatcgtcgatctctacccctccatctc 149  Q
    |||||||| ||||||||||||| |||||||||||| |||||| || ||   |||||| ||||||||||  ||||||| ||||||||||| ||||||||||    
T  69 atctctacccctccatctcaaggaccatcgcctactatttctcctcct---gctgctgctcctgctgtgactccatcatcgatctctactcctccatctc 165  T
Q  150 aagcaccatcgcct 163  Q
    ||||||||||||||    
T  166 aagcaccatcgcct 179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 214 - 316
Target Start/End: Original strand, 59 - 161
Alignment:
Q  214 tccatcgtcgatctctacacctccatctcaaacaccatcgcctacaatttctccttccgctgctgttcctgctgtgactccatcgtcgatctctgatcct 313  Q
    |||||| | ||||||||| ||||||||||||  |||||||||||| ||||||||| | ||||||| |||||||||||||||||| |||||||||  ||||    
T  59 tccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcctcctgctgctgctcctgctgtgactccatcatcgatctctactcct 158  T
Q  314 cca 316  Q
    |||    
T  159 cca 161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 267
Target Start/End: Original strand, 46 - 190
Alignment:
Q  108 ctcctgctgtcgctccatcgtcgatctctacccctccatctcaagcaccatcgcctaccatatttactccctctgctgctcctcttgctgccactcctgc 207  Q
    |||||| ||||| |||||| | ||||||||||||||||||||||| ||||||||||||  |||||             |||||| ||||||  |||||||    
T  46 ctcctgttgtcgatccatcctggatctctacccctccatctcaaggaccatcgcctac--tattt-------------ctcctcctgctgctgctcctgc 130  T
Q  208 tgtgactccatcgtcgatctctacacctccatctcaaacaccatcgcctacaatttctcc 267  Q
    |||||||||||| ||||||||||| |||||||||||| ||||||||||| | ||||||||    
T  131 tgtgactccatcatcgatctctactcctccatctcaagcaccatcgcctgcgatttctcc 190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 138 - 188
Alignment:
Q  41 ccatcgtcaatctctactcctccatctcaagcaccatcgcctacgatttct 91  Q
    ||||| || ||||||||||||||||||||||||||||||||| ||||||||    
T  138 ccatcatcgatctctactcctccatctcaagcaccatcgcctgcgatttct 188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 159
Target Start/End: Original strand, 313 - 352
Alignment:
Q  120 ctccatcgtcgatctctacccctccatctcaagcaccatc 159  Q
    |||||||||| |||||||||||||||||| ||||||||||    
T  313 ctccatcgtccatctctacccctccatctaaagcaccatc 352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 201 - 316
Target Start/End: Original strand, 165205 - 165320
Alignment:
Q  201 ctcctgctgtgactccatcgtcgatctctacacctccatctcaaacaccatcgcctacaatttctccttccgctgctgttcctgctgtgactccatcgtc 300  Q
    ||||||||||  ||||||| | ||||||||| ||||||||||||  |||||||||||| ||||||||| | ||||||| ||||||||||||||||| |||    
T  165205 ctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcctcctgctgctgctcctgctgtgactccatggtc 165304  T
Q  301 gatctctgatcctcca 316  Q
    |||||||  |||||||    
T  165305 gatctctactcctcca 165320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 163
Target Start/End: Original strand, 165208 - 165338
Alignment:
Q  30 ctgctgtcgccccatcgtcaatctctactcctccatctcaagcaccatcgcctacgatttcttctgctcttgctgcttctcctgctgtcgctccatcgtc 129  Q
    |||||||||| ||||| |  |||||||| ||||||||||||| |||||||||||| |||||| || ||   |||||| ||||||||||  |||||| |||    
T  165208 ctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcctcct---gctgctgctcctgctgtgactccatggtc 165304  T
Q  130 gatctctacccctccatctcaagcaccatcgcct 163  Q
    ||||||||| ||||||||||||| ||||||||||    
T  165305 gatctctactcctccatctcaaggaccatcgcct 165338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 106 - 267
Target Start/End: Original strand, 165203 - 165349
Alignment:
Q  106 ttctcctgctgtcgctccatcgtcgatctctacccctccatctcaagcaccatcgcctaccatatttactccctctgctgctcctcttgctgccactcct 205  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||  |||||             |||||| ||||||  |||||    
T  165203 ttctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctac--tattt-------------ctcctcctgctgctgctcct 165287  T
Q  206 gctgtgactccatcgtcgatctctacacctccatctcaaacaccatcgcctacaatttctcc 267  Q
    ||||||||||||| |||||||||||| ||||||||||||  |||||||||| | ||||||||    
T  165288 gctgtgactccatggtcgatctctactcctccatctcaaggaccatcgcctgcgatttctcc 165349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 165297 - 165347
Alignment:
Q  41 ccatcgtcaatctctactcctccatctcaagcaccatcgcctacgatttct 91  Q
    |||| ||| |||||||||||||||||||||| |||||||||| ||||||||    
T  165297 ccatggtcgatctctactcctccatctcaaggaccatcgcctgcgatttct 165347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 14248518 - 14248388
Alignment:
Q  30 ctgctgtcgccccatcgtcaatctctactcctccatctcaagcaccatcgcctacgatttcttctgctcttgctgcttctcctgctgtcgctccatcgtc 129  Q
    |||||||||| ||||| |  |||||||| ||||||||||||| |||||||||||| |||||| || ||   |||||| ||||||||||  |||||| |||    
T  14248518 ctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcctcct---gctgctgctcctgctgtgactccatggtc 14248422  T
Q  130 gatctctacccctccatctcaagcaccatcgcct 163  Q
    ||||||||| ||||||||||||| ||||||||||    
T  14248421 gatctctactcctccatctcaaggaccatcgcct 14248388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 201 - 316
Target Start/End: Complemental strand, 14248521 - 14248406
Alignment:
Q  201 ctcctgctgtgactccatcgtcgatctctacacctccatctcaaacaccatcgcctacaatttctccttccgctgctgttcctgctgtgactccatcgtc 300  Q
    ||||||||||  ||||||| | ||||||||| ||||||||||||  |||||||||||| ||||||||| | ||||||| ||||||||||||||||| |||    
T  14248521 ctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcctcctgctgctgctcctgctgtgactccatggtc 14248422  T
Q  301 gatctctgatcctcca 316  Q
    |||||||  |||||||    
T  14248421 gatctctactcctcca 14248406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 106 - 267
Target Start/End: Complemental strand, 14248523 - 14248377
Alignment:
Q  106 ttctcctgctgtcgctccatcgtcgatctctacccctccatctcaagcaccatcgcctaccatatttactccctctgctgctcctcttgctgccactcct 205  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||| || | | ||||  |||||||               ||||    
T  14248523 ttctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcctcctgctgctgc---------------tcct 14248439  T
Q  206 gctgtgactccatcgtcgatctctacacctccatctcaaacaccatcgcctacaatttctcc 267  Q
    ||||||||||||| |||||||||||| ||||||||||||  |||||||||| | ||||||||    
T  14248438 gctgtgactccatggtcgatctctactcctccatctcaaggaccatcgcctgcgatttctcc 14248377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 213 - 307
Target Start/End: Complemental strand, 14317071 - 14316977
Alignment:
Q  213 ctccatcgtcgatctctacacctccatctcaaacaccatcgcctacaatttctccttccgctgctgttcctgctgtgactccatcgtcgatctct 307  Q
    ||||||| | ||||||||| || |||||||||  |||||||||||| ||||||||||| ||||||| ||||| |||||||||||| |||||||||    
T  14317071 ctccatcatggatctctaccccaccatctcaaggaccatcgcctactatttctccttctgctgctgctcctgatgtgactccatcatcgatctct 14316977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 14317060 - 14316950
Alignment:
Q  50 atctctactcctccatctcaagcaccatcgcctacgatttcttctgctcttgctgcttctcctgctgtcgctccatcgtcgatctctacccctccatctc 149  Q
    |||||||| || |||||||||| |||||||||||| |||||| || ||   |||||| |||||| |||  ||||||| ||||||||||| ||||| ||||    
T  14317060 atctctaccccaccatctcaaggaccatcgcctactatttctccttct---gctgctgctcctgatgtgactccatcatcgatctctactcctccgtctc 14316964  T
Q  150 aagcaccatcgcct 163  Q
    ||||||| ||||||    
T  14316963 aagcaccctcgcct 14316950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 14351696 - 14351646
Alignment:
Q  41 ccatcgtcaatctctactcctccatctcaagcaccatcgcctacgatttct 91  Q
    ||||| ||| |||||||||| ||||||||||||||||||||||||||||||    
T  14351696 ccatcatcagtctctactccaccatctcaagcaccatcgcctacgatttct 14351646  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 14317083 - 14317026
Alignment:
Q  108 ctcctgctgtcgctccatcgtcgatctctacccctccatctcaagcaccatcgcctac 165  Q
    |||||| |||||||||||| | |||||||||||| |||||||||| ||||||||||||    
T  14317083 ctcctgttgtcgctccatcatggatctctaccccaccatctcaaggaccatcgcctac 14317026  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 14248429 - 14248379
Alignment:
Q  41 ccatcgtcaatctctactcctccatctcaagcaccatcgcctacgatttct 91  Q
    |||| ||| |||||||||||||||||||||| |||||||||| ||||||||    
T  14248429 ccatggtcgatctctactcctccatctcaaggaccatcgcctgcgatttct 14248379  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 266
Target Start/End: Complemental strand, 14351710 - 14351645
Alignment:
Q  201 ctcctgctgtgactccatcgtcgatctctacacctccatctcaaacaccatcgcctacaatttctc 266  Q
    |||||||||| |||||||| ||  ||||||| || ||||||||| ||||||||||||| |||||||    
T  14351710 ctcctgctgttactccatcatcagtctctactccaccatctcaagcaccatcgcctacgatttctc 14351645  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 159
Target Start/End: Complemental strand, 14248281 - 14248242
Alignment:
Q  120 ctccatcgtcgatctctacccctccatctcaagcaccatc 159  Q
    |||||||| |||||||||||||||||||| ||||||||||    
T  14248281 ctccatcggcgatctctacccctccatctaaagcaccatc 14248242  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 14316991 - 14316942
Alignment:
Q  41 ccatcgtcaatctctactcctccatctcaagcaccatcgcctacgatttc 90  Q
    ||||| || |||||||||||||| ||||||||||| |||||| |||||||    
T  14316991 ccatcatcgatctctactcctccgtctcaagcaccctcgcctgcgatttc 14316942  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 14351710 - 14351653
Alignment:
Q  108 ctcctgctgtcgctccatcgtcgatctctacccctccatctcaagcaccatcgcctac 165  Q
    ||||||||||  ||||||| ||  ||||||| || |||||||||||||||||||||||    
T  14351710 ctcctgctgttactccatcatcagtctctactccaccatctcaagcaccatcgcctac 14351653  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 14316998 - 14316950
Alignment:
Q  208 tgtgactccatcgtcgatctctacacctccatctcaaacaccatcgcct 256  Q
    |||||||||||| ||||||||||| ||||| |||||| |||| ||||||    
T  14316998 tgtgactccatcatcgatctctactcctccgtctcaagcaccctcgcct 14316950  T

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Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 196 - 274
Target Start/End: Complemental strand, 37245185 - 37245107
Alignment:
Q  196 tgccactcctgctgtgactccatcgtcgatctctacacctccatctcaaacaccatcgcctacaatttctccttccgct 274  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||  | |||||||| ||||||    
T  37245185 tgccgctcctgctgtgactccatcgtcgatctctactcctccatctcaagcaccatcaccagcgatttctccctccgct 37245107  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 37245180 - 37245129
Alignment:
Q  108 ctcctgctgtcgctccatcgtcgatctctacccctccatctcaagcaccatc 159  Q
    ||||||||||  ||||||||||||||||||| ||||||||||||||||||||    
T  37245180 ctcctgctgtgactccatcgtcgatctctactcctccatctcaagcaccatc 37245129  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 37245166 - 37245116
Alignment:
Q  41 ccatcgtcaatctctactcctccatctcaagcaccatcgcctacgatttct 91  Q
    |||||||| ||||||||||||||||||||||||||||| ||  ||||||||    
T  37245166 ccatcgtcgatctctactcctccatctcaagcaccatcaccagcgatttct 37245116  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 37241960 - 37241922
Alignment:
Q  41 ccatcgtcaatctctactcctccatctcaagcaccatcg 79  Q
    |||||||||||||||||||||||| || |||||||||||    
T  37241960 ccatcgtcaatctctactcctccaactaaagcaccatcg 37241922  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 37242181 - 37242112
Alignment:
Q  183 ctgctcctcttgctgccactcctgctgtgactccatcgtcgatctctacacctccatctcaaacaccatc 252  Q
    ||||| ||| || |||| ||||||| || ||||||| ||||||||| || |||||||||||| |||||||    
T  37242181 ctgcttctcctgttgccgctcctgcagttactccattgtcgatctcaactcctccatctcaagcaccatc 37242112  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 37241982 - 37241922
Alignment:
Q  193 tgctgccactcctgctgtgactccatcgtcgatctctacacctccatctcaaacaccatcg 253  Q
    ||||||| |||||||| | ||||||||||| |||||||| |||||| || || ||||||||    
T  37241982 tgctgccgctcctgctattactccatcgtcaatctctactcctccaactaaagcaccatcg 37241922  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 37245179 - 37245143
Alignment:
Q  280 tcctgctgtgactccatcgtcgatctctgatcctcca 316  Q
    ||||||||||||||||||||||||||||  |||||||    
T  37245179 tcctgctgtgactccatcgtcgatctctactcctcca 37245143  T

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Target: scaffold1801 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 159
Target Start/End: Original strand, 200 - 239
Alignment:
Q  120 ctccatcgtcgatctctacccctccatctcaagcaccatc 159  Q
    ||||||||||||||||||||||||||||| ||||| ||||    
T  200 ctccatcgtcgatctctacccctccatctaaagcatcatc 239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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