View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10401_15 (Length: 300)
Name: NF10401_15
Description: NF10401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10401_15 |
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| [»] scaffold0504 (3 HSPs) |
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Alignment Details
Target: scaffold0504 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: scaffold0504
Description:
Target: scaffold0504; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 24 - 272
Target Start/End: Original strand, 7241 - 7507
Alignment:
| Q |
24 |
tcatcagaccatttcccaagaacacgcatttacaacactctcacccaactcatcagagaaactcaaccatcacc------accaccaccgcagcatgtca |
117 |
Q |
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| T |
7241 |
tcatcagaccatttcccaagaacacgcctttacaacactctcaccccactcatcagcgaaactcaaccatcaccaccaccaccaccaccgcaacatgtca |
7340 |
T |
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| Q |
118 |
tctcaggttaactccgatatcccaccctcctccgctcccgtcgtcatgctctctgctcccgacacccag------------gatgtctttcacactccgc |
205 |
Q |
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| T |
7341 |
tctcaggttaactccgatatcccaccctcctccactcccgtcgtcatgctctctgctcccgacacccaggacaacccccaagaagcctttcacactccgc |
7440 |
T |
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| Q |
206 |
cagagcaagcctcacttcactcttccgacgtcaatgttgttcgtcactctgctgggtcccaggtgtt |
272 |
Q |
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| T |
7441 |
cggagcaagcctcacttcactcttccgacgtcaatgttgttcctccctctgctgggtcccaggtgtt |
7507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0504; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 272
Target Start/End: Original strand, 7622 - 7657
Alignment:
| Q |
237 |
caatgttgttcgtcactctgctgggtcccaggtgtt |
272 |
Q |
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| T |
7622 |
caatgttgttcgtcactctgctgggtcccaggtgtt |
7657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0504; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 7199 - 7236
Alignment:
| Q |
32 |
ccatttcccaagaacacgcatttacaacactctcaccc |
69 |
Q |
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| T |
7199 |
ccatttcccaagaacacgcctttacaacactctcaccc |
7236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 32 - 272
Target Start/End: Complemental strand, 12027206 - 12026945
Alignment:
| Q |
32 |
ccatttcccaagaacacgcatttacaacactctcacccaactca-tca--gagaaactcaaccatcaccaccaccacc------gcagcatgtcatctca |
122 |
Q |
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| T |
12027206 |
ccatttcccaagaacacgcctttacaacactctcaccccactcactcatagagaaactcaaccatcaccaccaccaccaccaccgcaacatgtcatctca |
12027107 |
T |
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| Q |
123 |
ggttaactccgatatcccaccctcctccgctcccgtcgtcatgctctctgctcccgacacccag------------gatgtctttcacactccgccagag |
210 |
Q |
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| T |
12027106 |
ggttaactccgatatcccaccctcctccactcccgtcgtcatgctctctgctcccgacacccaggacaacccccaagaagcctttcacactccgccggag |
12027007 |
T |
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| Q |
211 |
caagcctcacttcactcttccgacgtcaatgttgttcgtcactctgctgggtcccaggtgtt |
272 |
Q |
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| T |
12027006 |
caagcctcacttcactcttccgacgtcaatgttgttcgtcactctgctgggtcccaggtgtt |
12026945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 272
Target Start/End: Complemental strand, 12026926 - 12026891
Alignment:
| Q |
237 |
caatgttgttcgtcactctgctgggtcccaggtgtt |
272 |
Q |
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| T |
12026926 |
caatgttgttcgtcactctgctgggtcccaggtgtt |
12026891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 116 - 243
Target Start/End: Original strand, 18188581 - 18188720
Alignment:
| Q |
116 |
catctcaggttaactccgatatcccaccctcctccgctcccgtcgtcatgctctctgctcccgacacc------------caggatgtctttcacactcc |
203 |
Q |
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| T |
18188581 |
catctcaggctaactctgacatcccagcctcctctgcttccgtcgtcatgctctccgctcccgacacccaagacaaccctcaagacgtctttcacactcc |
18188680 |
T |
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| Q |
204 |
gccagagcaagcctcacttcactcttccgacgtcaatgtt |
243 |
Q |
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| T |
18188681 |
gccggaggaagcttcacttcactcttccgacgtcgatgtt |
18188720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 52894863 - 52894915
Alignment:
| Q |
211 |
caagcctcacttcactcttccgacgtcaatgttgttcgtcactctgctgggtcc |
264 |
Q |
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| T |
52894863 |
caagcttcacttcactcttccaacgtcaatg-tgttcctcactctgctgggtcc |
52894915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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