View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10401_3 (Length: 635)
Name: NF10401_3
Description: NF10401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10401_3 |
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Alignment Details
Target: chr2 (Bit Score: 591; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 11 - 609
Target Start/End: Complemental strand, 24757436 - 24756838
Alignment:
| Q |
11 |
cacagagcaaagacatcatagtatggcaacaaccagatttaaggttgtttgcgaaattcggtcaaggagatggatctgtcaaagcactagcaacttttgg |
110 |
Q |
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| T |
24757436 |
cacagggcaaagacatcatagtatggcaacaaccagatttaaggttgtttgcgaaattcggtcaaggagatggatctgtcaaagcactagcaacttttgg |
24757337 |
T |
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| Q |
111 |
aaacaatgttttcactgctcatcaagatagcaagattcgtgtttggaaagtttctagaagttcagagaatgtgttcaagctcgtcgatacgcttccaaca |
210 |
Q |
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| T |
24757336 |
aaacaatgttttcactgctcatcaagatagcaagattcgtgtttggaaagtttctagaagttcagagaatgtgttcaagctcgtcgatacgcttccaaca |
24757237 |
T |
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| Q |
211 |
acaaaagactatttggggaagtttatgaaacaaagtaattatgttcaaactaggagacatcacaagaggttatggattgaacatgctgatagcatttctt |
310 |
Q |
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| T |
24757236 |
acaaaagactatttggggaagtttatgaaacaaagtaattatgttcaaactaggagacatcacaagaggttatggattgaacatgctgatagcatttctt |
24757137 |
T |
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| Q |
311 |
gtttggttgttcataatggtttgatttattcagggtcatgggataagacactaaaagtttggagtgtttctgatttgaagtgtttagaatccattaaggc |
410 |
Q |
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| T |
24757136 |
gtttggttgttcataatggtttgatttattcagggtcatgggataagacactaaaagtttggagtgtttctgatttgaagtgtttagaatccattaaggc |
24757037 |
T |
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| Q |
411 |
gcatgatgatgctatcaatgggttggtagcatgtaaaggggttgtttattctgcttctgcagatgggaaaattaaggcatggggaaaagaagggaaaaat |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24757036 |
gcatgatgatgctatcaatgggttggtagcatgtaaagggattgtttattctgcttctgcagatgggaaaattaaggcatggggaaaagaagggaaaaat |
24756937 |
T |
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| Q |
511 |
ttgcatactttgaaaggtgttttagagggtcatagagatgtttcttttaattctgttgttgtttctgatgatggtaaatgggtttatggaggtggttct |
609 |
Q |
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| T |
24756936 |
ttgcatactttgaaaggtgttttagagggtcatagagatgtttcttttaattctgttgttgtttctgatgatggtaaatgggtttatggaggtggttct |
24756838 |
T |
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