View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10401_4 (Length: 591)

Name: NF10401_4
Description: NF10401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10401_4
NF10401_4
[»] chr4 (4 HSPs)
chr4 (283-587)||(27538387-27538683)
chr4 (48-190)||(27538771-27538913)
chr4 (88-187)||(43398701-43398799)
chr4 (26-54)||(27539325-27539353)
[»] chr8 (2 HSPs)
chr8 (312-478)||(34541097-34541263)
chr8 (363-477)||(3641055-3641169)
[»] chr7 (1 HSPs)
chr7 (351-481)||(20276633-20276763)
[»] chr5 (2 HSPs)
chr5 (88-187)||(29304381-29304479)
chr5 (142-190)||(12379745-12379793)
[»] chr3 (1 HSPs)
chr3 (88-187)||(25343473-25343571)
[»] chr6 (1 HSPs)
chr6 (88-187)||(2090248-2090346)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 283 - 587
Target Start/End: Complemental strand, 27538683 - 27538387
Alignment:
Q  283 caccatcattgtcaatgttgcacctatagaaagaatcagaacacataaagatgctccaaatccatgttttaaacttaactcattataagatcatgtgcca 382  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27538683 caccatcattgtcaatgttgcaccgatagaaagaatcagaacacataaagatgctccaaatccatgttttaaacttaactcattataagatcaagtgcca 27538584  T
Q  383 aatgccaaagaaatactctctaacaagattaattacaaggaagaatggatcgtgcaatttcaacaaaattttttgttgtggcttttagcattttccttta 482  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||    
T  27538583 aatgccaaagaaatactctctaacaagattaattacaaggaagaatggatcgtgcaatttcaacgaaattttttggtgtagcttttagcattttccttta 27538484  T
Q  483 gtgatattcttcgacatgcgttgggttggagtaatattgagtccttataatatactttccaaaatataaacttggaaagttgcaatgattatataaactt 582  Q
    ||  | || |     | | ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  27538483 gtatttttgt-----aggtgttgggttggag---tattgagtccttataatatactttccaaaatataaacttggaaagttgcaatgattatataagctt 27538392  T

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Target: chr4; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 48 - 190
Target Start/End: Complemental strand, 27538913 - 27538771
Alignment:
Q  48 taagttatatgtacacccgaggctcatttagtggtgagtcttgctatatggtacgagagatttgttgccggactcatgcacgacatactcctaaacacac 147  Q
    ||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||  |||||||||||||||||||| |||||||||    
T  27538913 taagttatatgtacacccgaggcccatttagcggtgagtcttgccatatggtacgagagatttgttgcacgactcatgcacgacatactcttaaacacac 27538814  T
Q  148 aatttgcttggttaatgacattcttcttgttggcttatggttt 190  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  27538813 aatttgcttcgttaatgacattcttcttgttggcttatggttt 27538771  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 88 - 187
Target Start/End: Complemental strand, 43398799 - 43398701
Alignment:
Q  88 ttgctatatggtacgagagatttgttgccggactcatgcacgacatactcctaaacacacaatttgcttggttaatgacattcttcttgttggcttatgg 187  Q
    |||||||||||||||||||||||  |||  |||||||||||||||| || | ||||||||| |||| ||||| |||||| ||||||| ||||| ||||||    
T  43398799 ttgctatatggtacgagagatttaatgcgcgactcatgcacgacatgct-caaaacacacactttgtttggtgaatgaccttcttctagttggtttatgg 43398701  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 27539353 - 27539325
Alignment:
Q  26 aacaaatgtgagaatttataaataagtta 54  Q
    |||||||||||||||||||||||||||||    
T  27539353 aacaaatgtgagaatttataaataagtta 27539325  T

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Target: chr8 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 312 - 478
Target Start/End: Original strand, 34541097 - 34541263
Alignment:
Q  312 aaagaatcagaacacataaagatgctccaaatccatgttttaaacttaactcattataagatcatgtgccaaatgccaaagaaatactctctaacaagat 411  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34541097 aaagaatcataacacataaagatgctccaaattcatgttttaaacttaactcattataagatcaagtgccaaatgccaaagaaatactctctaacaagat 34541196  T
Q  412 taattacaaggaagaatggatcgtgcaatttcaacaaaattttttgttgtggcttttagcattttcc 478  Q
    |||||| |||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  34541197 taattataaggaaaaatggttcgtgcaatttcaacaaaattttttgtcgtggcttttagcattttcc 34541263  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 363 - 477
Target Start/End: Original strand, 3641055 - 3641169
Alignment:
Q  363 cattataagatcatgtgccaaatgccaaagaaatactctctaacaagattaattacaaggaagaatggatcgtgcaatttcaacaaaattttttgttgtg 462  Q
    ||||||||||||| |||||||||||||||| | |||  |||||||||||||||||||| || |||||| |||||||||||||   |||||||||||  ||    
T  3641055 cattataagatcaagtgccaaatgccaaagcattaccgtctaacaagattaattacaaagaggaatggttcgtgcaatttcagagaaattttttgtcatg 3641154  T
Q  463 gcttttagcattttc 477  Q
     ||||| ||||||||    
T  3641155 tcttttggcattttc 3641169  T

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Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 351 - 481
Target Start/End: Complemental strand, 20276763 - 20276633
Alignment:
Q  351 ttaaacttaactcattataagatcatgtgccaaatgccaaagaaatactctctaacaagattaattacaaggaagaatggatcgtgcaatttcaacaaaa 450  Q
    |||||| ||||||  ||||| |||| |||||||||||||||| |   || ||||||||| |||||||||| || |||||| ||||||||||||||| ||     
T  20276763 ttaaacgtaactccctataaaatcaagtgccaaatgccaaagcatagctgtctaacaaggttaattacaaagaggaatggttcgtgcaatttcaacgaat 20276664  T
Q  451 ttttttgttgtggcttttagcattttccttt 481  Q
    | ||| || ||| |||||||| |||||||||    
T  20276663 tctttcgtcgtgccttttagcgttttccttt 20276633  T

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Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 88 - 187
Target Start/End: Original strand, 29304381 - 29304479
Alignment:
Q  88 ttgctatatggtacgagagatttgttgccggactcatgcacgacatactcctaaacacacaatttgcttggttaatgacattcttcttgttggcttatgg 187  Q
    |||||||||||||||||||||||  |||  |||||||||||||||| || | ||||||||| |||| ||||| |||||| ||||||| ||||| ||||||    
T  29304381 ttgctatatggtacgagagatttaatgcacgactcatgcacgacatgct-caaaacacacactttgtttggtgaatgaccttcttctagttggtttatgg 29304479  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 12379793 - 12379745
Alignment:
Q  142 acacacaatttgcttggttaatgacattcttcttgttggcttatggttt 190  Q
    ||||||| ||||| |||| |||||| ||||||||||||| |||||||||    
T  12379793 acacacactttgcatggtgaatgaccttcttcttgttggtttatggttt 12379745  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 187
Target Start/End: Complemental strand, 25343571 - 25343473
Alignment:
Q  88 ttgctatatggtacgagagatttgttgccggactcatgcacgacatactcctaaacacacaatttgcttggttaatgacattcttcttgttggcttatgg 187  Q
    |||||||||||||||||||||||  |||  | |||||||||||||| || | ||||||||| |||| ||||| |||||| ||||||| ||||| ||||||    
T  25343571 ttgctatatggtacgagagatttaatgcacggctcatgcacgacatgct-caaaacacacactttgtttggtgaatgaccttcttctagttggtttatgg 25343473  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 88 - 187
Target Start/End: Original strand, 2090248 - 2090346
Alignment:
Q  88 ttgctatatggtacgagagatttgttgccggactcatgcacgacatactcctaaacacacaatttgcttggttaatgacattcttcttgttggcttatgg 187  Q
    |||||||||||||||||||||||  |||  |||||||| ||||||| || | ||||||||| |||| ||||| ||||||  |||||| ||||| ||||||    
T  2090248 ttgctatatggtacgagagatttaatgcacgactcatgtacgacatgct-caaaacacacactttgtttggtgaatgaccctcttctagttggtttatgg 2090346  T

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