View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10401_5 (Length: 462)
Name: NF10401_5
Description: NF10401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10401_5 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 163 - 459
Target Start/End: Complemental strand, 41348628 - 41348333
Alignment:
| Q |
163 |
agtacaacacagataagctaaccgatagtataaaaaataagtgcaataaaacagaattttattggcttctaatttctttcattagagctgattttacctg |
262 |
Q |
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| T |
41348628 |
agtacaacacagatatgctaaccgatagtataaaaaataagtgcaataaaacagaattttattggcttctaatttctttcattagagctgattttacctg |
41348529 |
T |
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| Q |
263 |
tatacttattctataggtacacgaagatttcatctgtttannnnnnnnnnnnnaggcataagttagcacgtccnnnnnnnntttacttgattttaacaac |
362 |
Q |
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| T |
41348528 |
tatacttattctataggtacacgaagatttcatctgtttatttttgtttttttaggcataaggtagcacgtccaaaaaaaa-ttacttgattttaacaac |
41348430 |
T |
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| Q |
363 |
taaaaatagatgatgaattaagaaagagttgactgttttctctttatatatgagttatctctgtgttgctgctgcagctgtcggtttgtcgaacgta |
459 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41348429 |
taaaaatagatgatgaattaagaaagagttgactgttttctctttatatatgagttatctctgtgttgctgctgcagctgtcggtttgtcgaacgta |
41348333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 41348785 - 41348686
Alignment:
| Q |
7 |
gtgagatgaatacttggcatcggagcatgttccatttctgtcatgtttgccactctttgctgacacactcttatctactgcacttttcatctcctctcaa |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41348785 |
gtgatatgaatacttggcatcggagcatgttccatttctgtcatgtttgccactctttgctgacacactcttatctactgcacttttcatctcctctcaa |
41348686 |
T |
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