View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10401_6 (Length: 422)

Name: NF10401_6
Description: NF10401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10401_6
NF10401_6
[»] chr7 (5 HSPs)
chr7 (84-217)||(6206131-6206257)
chr7 (331-395)||(6206322-6206386)
chr7 (249-304)||(6206257-6206312)
chr7 (29-75)||(6206024-6206070)
chr7 (353-394)||(6232762-6232803)


Alignment Details
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 84 - 217
Target Start/End: Original strand, 6206131 - 6206257
Alignment:
Q  84 agaaaagcttcagaacaacataacaacatggctgaatagaaaaataaaattagactagttagagagtatcccaattcccaacacataaacgcattcttgc 183  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  6206131 agaaaagcttcagaacaacataacaacatggctgaataaaaaaataaaattagactagttagagagta-------tcccaacacataaacgcattcttgc 6206223  T
Q  184 tcgaaccgaatacaacttgtaccattgataggta 217  Q
    |||||| |||||||||||||||||||||||||||    
T  6206224 tcgaactgaatacaacttgtaccattgataggta 6206257  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 331 - 395
Target Start/End: Original strand, 6206322 - 6206386
Alignment:
Q  331 gaatcagtttcaaattgtaggatgtttttctaatctcggacataggttaataatcagtttcggtg 395  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  6206322 gaatcagtttcaaattgtaggatgtttatctaatctcggacataggttaataaccagtttcggtg 6206386  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 249 - 304
Target Start/End: Original strand, 6206257 - 6206312
Alignment:
Q  249 aagtagtttgatattattttttacaaattgaacttcaaaatgtagataagcattaa 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6206257 aagtagtttgatattattttttacaaattgaacttcaaaatgtagataagcattaa 6206312  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 6206024 - 6206070
Alignment:
Q  29 agtaaacatttcttgcagctatctagtgctggaggctttctaaagca 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  6206024 agtaaacatttcttgcagctatctagtgctggaggctttctaaagca 6206070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 353 - 394
Target Start/End: Original strand, 6232762 - 6232803
Alignment:
Q  353 tgtttttctaatctcggacataggttaataatcagtttcggt 394  Q
    ||||| ||||||||||||||||||||||||| ||||||||||    
T  6232762 tgtttatctaatctcggacataggttaataaccagtttcggt 6232803  T

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